RNA–Protein interactions for RNA: ENST00000221166.9

NEFM-201, Transcript of neurofilament medium, humanhuman

APPRIS P2 TSL 1 (best) BASIC

Gene NEFM, Length 4,020 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NEFM-201ENST00000221166 NISCHQ9Y2I1 1504 aa21.84■■□□□ 1.09
NEFM-201ENST00000221166 SHROOM4Q9ULL8 1493 aa19.52■□□□□ 0.72
NEFM-201ENST00000221166 SUPT5HO00267 1087 aaKnown RBP19.34■□□□□ 0.69
NEFM-201ENST00000221166 DCAF8L2P0C7V8 631 aa19.15■□□□□ 0.66
NEFM-201ENST00000221166 CHIC1Q5VXU3 224 aa18.52■□□□□ 0.55
NEFM-201ENST00000221166 PCGF6Q9BYE7 350 aa18.46■□□□□ 0.55
NEFM-201ENST00000221166 ZCCHC6Q5VYS8 1495 aaKnown RBP18.41■□□□□ 0.54
NEFM-201ENST00000221166 HRCP23327 699 aa18.3■□□□□ 0.52
NEFM-201ENST00000221166 MYO15BQ96JP2 1530 aa18.26■□□□□ 0.51
NEFM-201ENST00000221166 LOC105371045A0A1W2PR82 267 aa18.22■□□□□ 0.51
NEFM-201ENST00000221166 PPARGC1BQ86YN6 1023 aaKnown RBP18.13■□□□□ 0.49
NEFM-201ENST00000221166 CCDC180Q9P1Z9 1646 aa18.12■□□□□ 0.49
NEFM-201ENST00000221166 EHMT2Q96KQ7 1210 aa18.07■□□□□ 0.48
NEFM-201ENST00000221166 FAM9AQ8IZU1 332 aaPredicted RBP17.99■□□□□ 0.47
NEFM-201ENST00000221166 TRIM41Q8WV44 630 aa17.85■□□□□ 0.45
NEFM-201ENST00000221166 TRIM26Q12899 539 aaPredicted RBP17.82■□□□□ 0.44
NEFM-201ENST00000221166 DCAF1Q9Y4B6 1507 aa17.69■□□□□ 0.42
NEFM-201ENST00000221166 SCRIBQ14160 1630 aa17.53■□□□□ 0.4
NEFM-201ENST00000221166 ZEB1P37275 1124 aaPredicted RBP17.52■□□□□ 0.39
NEFM-201ENST00000221166 RSF1Q96T23 1441 aaPredicted RBP17.49■□□□□ 0.39
NEFM-201ENST00000221166 TTBK1Q5TCY1 1321 aaPredicted RBP17.48■□□□□ 0.39
NEFM-201ENST00000221166 ABCC9O60706 1549 aa17.38■□□□□ 0.37
NEFM-201ENST00000221166 CCER1Q8TC90 406 aaPredicted RBP17.32■□□□□ 0.36
NEFM-201ENST00000221166 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP17.29■□□□□ 0.36
NEFM-201ENST00000221166 RB1CC1Q8TDY2 1594 aa17.26■□□□□ 0.35
NEFM-201ENST00000221166 CECR2Q9BXF3 1484 aa17.22■□□□□ 0.35
NEFM-201ENST00000221166 UBTFP17480 764 aaKnown RBP17.12■□□□□ 0.33
NEFM-201ENST00000221166 MROH2BQ7Z745 1585 aa17.08■□□□□ 0.32
NEFM-201ENST00000221166 SCAF1Q9H7N4 1312 aaKnown RBP17.03■□□□□ 0.32
NEFM-201ENST00000221166 RANGAP1P46060 587 aaPredicted RBP17.02■□□□□ 0.31
NEFM-201ENST00000221166 WIZO95785 1651 aa16.95■□□□□ 0.3
NEFM-201ENST00000221166 DIEXFQ68CQ4 756 aaKnown RBP16.95■□□□□ 0.3
NEFM-201ENST00000221166 NACADO15069 1562 aa16.94■□□□□ 0.3
NEFM-201ENST00000221166 PABPN1Q86U42 306 aaKnown RBP eCLIP16.93■□□□□ 0.3
NEFM-201ENST00000221166 PELP1Q8IZL8 1130 aaKnown RBP16.9■□□□□ 0.3
NEFM-201ENST00000221166 CENPBP07199 599 aaPredicted RBP16.89■□□□□ 0.29
NEFM-201ENST00000221166 HNRNPUL2Q1KMD3 747 aaKnown RBP16.88■□□□□ 0.29
NEFM-201ENST00000221166 YTHDC1Q96MU7 727 aaKnown RBP16.87■□□□□ 0.29
NEFM-201ENST00000221166 CSRNP3Q8WYN3 585 aa16.86■□□□□ 0.29
NEFM-201ENST00000221166 APLP2Q06481 763 aa16.85■□□□□ 0.29
NEFM-201ENST00000221166 NEUROD1Q13562 356 aa16.84■□□□□ 0.29
NEFM-201ENST00000221166 ACIN1Q9UKV3 1341 aaKnown RBP16.84■□□□□ 0.29
NEFM-201ENST00000221166 ABCC8Q09428 1581 aa16.8■□□□□ 0.28
NEFM-201ENST00000221166 GTF3C3Q9Y5Q9 886 aa16.8■□□□□ 0.28
NEFM-201ENST00000221166 CCDC88BA6NC98 1476 aa16.79■□□□□ 0.28
NEFM-201ENST00000221166 SOGA1O94964 1423 aa16.78■□□□□ 0.28
NEFM-201ENST00000221166 CEP162Q5TB80 1403 aa16.78■□□□□ 0.28
NEFM-201ENST00000221166 BAZ1AQ9NRL2 1556 aaPredicted RBP16.76■□□□□ 0.27
NEFM-201ENST00000221166 ZNF316A6NFI3 1004 aaPredicted RBP16.69■□□□□ 0.26
NEFM-201ENST00000221166 TNIKQ9UKE5 1360 aa16.66■□□□□ 0.26
NEFM-201ENST00000221166 RUSC2Q8N2Y8 1516 aa16.64■□□□□ 0.25
NEFM-201ENST00000221166 TOP2AP11388 1531 aaKnown RBP16.59■□□□□ 0.25
NEFM-201ENST00000221166 WRNQ14191 1432 aaPredicted RBP eCLIP16.54■□□□□ 0.24
NEFM-201ENST00000221166 GOLGA3Q08378 1498 aa16.53■□□□□ 0.24
NEFM-201ENST00000221166 MIER1Q8N108 512 aa16.53■□□□□ 0.24
NEFM-201ENST00000221166 EEA1Q15075 1411 aa16.52■□□□□ 0.24
NEFM-201ENST00000221166 SMARCA4P51532 1647 aa16.52■□□□□ 0.24
NEFM-201ENST00000221166 SMARCA2P51531 1590 aa16.51■□□□□ 0.23
NEFM-201ENST00000221166 ITGAEP38570 1179 aa16.5■□□□□ 0.23
NEFM-201ENST00000221166 CLIP1P30622 1438 aa16.49■□□□□ 0.23
NEFM-201ENST00000221166 EIF4G1Q04637 1599 aaKnown RBP16.42■□□□□ 0.22
NEFM-201ENST00000221166 CEP164Q9UPV0 1460 aa16.4■□□□□ 0.22
NEFM-201ENST00000221166 ATP1B4Q9UN42 357 aaPredicted RBP16.35■□□□□ 0.21
NEFM-201ENST00000221166 VPS8Q8N3P4 1428 aa16.3■□□□□ 0.2
NEFM-201ENST00000221166 BAZ1BQ9UIG0 1483 aaKnown RBP16.29■□□□□ 0.2
NEFM-201ENST00000221166 RAPGEF2Q9Y4G8 1499 aa16.29■□□□□ 0.2
NEFM-201ENST00000221166 KANK4Q5T7N3 995 aaPredicted RBP16.25■□□□□ 0.19
NEFM-201ENST00000221166 SYNJ1O43426 1573 aa16.23■□□□□ 0.19
NEFM-201ENST00000221166 ATAD2BQ9ULI0 1458 aa16.2■□□□□ 0.18
NEFM-201ENST00000221166 FAM50AQ14320 339 aaKnown RBP16.16■□□□□ 0.18
NEFM-201ENST00000221166 P3H3Q8IVL6 736 aa16.16■□□□□ 0.18
NEFM-201ENST00000221166 UNC13AQ9UPW8 1703 aa16.16■□□□□ 0.18
NEFM-201ENST00000221166 KIF21BO75037 1637 aa16.11■□□□□ 0.17
NEFM-201ENST00000221166 BICRAQ9NZM4 1560 aa16.11■□□□□ 0.17
NEFM-201ENST00000221166 DHX57Q6P158 1386 aaKnown RBP16.09■□□□□ 0.17
NEFM-201ENST00000221166 MYT1Q01538 1121 aa16.07■□□□□ 0.16
NEFM-201ENST00000221166 BCANQ96GW7 911 aa16.06■□□□□ 0.16
NEFM-201ENST00000221166 KIF27Q86VH2 1401 aa16.04■□□□□ 0.16
NEFM-201ENST00000221166 CLSPNQ9HAW4 1339 aa16.03■□□□□ 0.16
NEFM-201ENST00000221166 DDX10Q13206 875 aaKnown RBP16.03■□□□□ 0.16
NEFM-201ENST00000221166 HIRIP3Q9BW71 556 aaPredicted RBP16.02■□□□□ 0.16
NEFM-201ENST00000221166 CCNB3Q8WWL7 1395 aa16.01■□□□□ 0.15
NEFM-201ENST00000221166 SIN3AQ96ST3 1273 aa15.99■□□□□ 0.15
NEFM-201ENST00000221166 SUPT16HQ9Y5B9 1047 aaKnown RBP15.99■□□□□ 0.15
NEFM-201ENST00000221166 KCNH8Q96L42 1107 aa15.97■□□□□ 0.15
NEFM-201ENST00000221166 ARAP1Q96P48 1450 aa15.96■□□□□ 0.15
NEFM-201ENST00000221166 PEG3Q9GZU2 1588 aa15.95■□□□□ 0.14
NEFM-201ENST00000221166 PRXQ9BXM0 1461 aa15.93■□□□□ 0.14
NEFM-201ENST00000221166 TOP2BQ02880 1626 aa15.92■□□□□ 0.14
NEFM-201ENST00000221166 RAB3GAP2Q9H2M9 1393 aa15.92■□□□□ 0.14
NEFM-201ENST00000221166 NEFLP07196 543 aa15.91■□□□□ 0.14
NEFM-201ENST00000221166 CUX2O14529 1486 aa15.9■□□□□ 0.14
NEFM-201ENST00000221166 FKBP8Q14318 412 aa15.88■□□□□ 0.13
NEFM-201ENST00000221166 TRIM52Q96A61 297 aa15.86■□□□□ 0.13
NEFM-201ENST00000221166 CARMIL1Q5VZK9 1371 aa15.86■□□□□ 0.13
NEFM-201ENST00000221166 CUX1P39880 1505 aa15.85■□□□□ 0.13
NEFM-201ENST00000221166 ANP32CO43423 234 aa15.84■□□□□ 0.13
NEFM-201ENST00000221166 ARHGAP35Q9NRY4 1499 aa15.84■□□□□ 0.13
NEFM-201ENST00000221166 ERICH3Q5RHP9 1530 aa15.83■□□□□ 0.13
NEFM-201ENST00000221166 RRBP1Q9P2E9 1410 aaKnown RBP15.83■□□□□ 0.13
Retrieved 100 of 20,778 RNA–protein pairs in 43.7 ms