RNA–Protein interactions for RNA: ENSMUST00000087883.12

Col3a1-201, Transcript of Collagen alpha-1(III) chain, mousemouse

APPRIS P1 TSL 1 (best) BASIC

Gene Col3a1, Length 5,564 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (Experimental data)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
Col3a1-201ENSMUST00000087883 Fkbp15Q6P9Q6 1216 aaKnown RBP18.61■□□□□ 0.57
Col3a1-201ENSMUST00000087883 Fam71e1A1L3C1 212 aa18.6■□□□□ 0.57
Col3a1-201ENSMUST00000087883 Trim44Q9QXA7 346 aa18.56■□□□□ 0.56
Col3a1-201ENSMUST00000087883 CanxP35564 591 aaKnown RBP18.56■□□□□ 0.56
Col3a1-201ENSMUST00000087883 Chic2Q9D9G3 165 aa18.55■□□□□ 0.56
Col3a1-201ENSMUST00000087883 Hsp90ab1P11499 724 aaKnown RBP18.51■□□□□ 0.55
Col3a1-201ENSMUST00000087883 Brd4Q9ESU6 1400 aaKnown RBP18.48■□□□□ 0.55
Col3a1-201ENSMUST00000087883 Trim30dE9PWL0 497 aa18.46■□□□□ 0.55
Col3a1-201ENSMUST00000087883 Trim26Q99PN3 545 aa18.44■□□□□ 0.54
Col3a1-201ENSMUST00000087883 Fgd1P52734 960 aa18.43■□□□□ 0.54
Col3a1-201ENSMUST00000087883 Aebp2Q9Z248 504 aaKnown RBP18.43■□□□□ 0.54
Col3a1-201ENSMUST00000087883 P3h3Q8CG70 732 aa18.41■□□□□ 0.54
Col3a1-201ENSMUST00000087883 Rb1cc1Q9ESK9 1588 aa18.4■□□□□ 0.54
Col3a1-201ENSMUST00000087883 BlmO88700 1416 aa18.39■□□□□ 0.53
Col3a1-201ENSMUST00000087883 Ccdc27Q3V036 639 aa18.38■□□□□ 0.53
Col3a1-201ENSMUST00000087883 Arid4bA2CG63 1314 aaKnown RBP18.38■□□□□ 0.53
Col3a1-201ENSMUST00000087883 PtmaP26350 111 aa18.37■□□□□ 0.53
Col3a1-201ENSMUST00000087883 Ofd1Q80Z25 1017 aa18.37■□□□□ 0.53
Col3a1-201ENSMUST00000087883 Plcb2A3KGF7 1181 aa18.31■□□□□ 0.52
Col3a1-201ENSMUST00000087883 Htatsf1Q8BGC0 757 aa18.28■□□□□ 0.52
Col3a1-201ENSMUST00000087883 Clstn2Q9ER65 966 aa18.28■□□□□ 0.52
Col3a1-201ENSMUST00000087883 Rgl3Q3UYI5 709 aa18.28■□□□□ 0.52
Col3a1-201ENSMUST00000087883 Bcl11aQ9QYE3 773 aa18.26■□□□□ 0.51
Col3a1-201ENSMUST00000087883 Plppr3Q7TPB0 716 aa18.25■□□□□ 0.51
Col3a1-201ENSMUST00000087883 Apbb1Q9QXJ1 710 aa18.25■□□□□ 0.51
Col3a1-201ENSMUST00000087883 Ppm1gQ61074 542 aa18.2■□□□□ 0.5
Col3a1-201ENSMUST00000087883 Setd5Q5XJV7 1441 aa18.18■□□□□ 0.5
Col3a1-201ENSMUST00000087883 SafbD3YXK2 937 aaKnown RBP18.17■□□□□ 0.5
Col3a1-201ENSMUST00000087883 Dbr1Q923B1 550 aa18.16■□□□□ 0.5
Col3a1-201ENSMUST00000087883 Irx3P81067 507 aa18.15■□□□□ 0.5
Col3a1-201ENSMUST00000087883 Spryd3E9Q9B3 442 aa18.14■□□□□ 0.49
Col3a1-201ENSMUST00000087883 Irx6Q9ER75 438 aa18.14■□□□□ 0.49
Col3a1-201ENSMUST00000087883 Neurod2Q62414 383 aa18.13■□□□□ 0.49
Col3a1-201ENSMUST00000087883 Grwd1Q810D6 446 aaKnown RBP18.1■□□□□ 0.49
Col3a1-201ENSMUST00000087883 Ubl4bQ9CQ84 188 aa18.1■□□□□ 0.49
Col3a1-201ENSMUST00000087883 B4galnt3Q6L8S8 986 aa18.08■□□□□ 0.49
Col3a1-201ENSMUST00000087883 Card11Q8CIS0 1159 aa18.08■□□□□ 0.48
Col3a1-201ENSMUST00000087883 Armcx1Q9CX83 456 aa18.07■□□□□ 0.48
Col3a1-201ENSMUST00000087883 Kdm2aP59997 1161 aa18.05■□□□□ 0.48
Col3a1-201ENSMUST00000087883 NacadQ5SWP3 1504 aa18.03■□□□□ 0.48
Col3a1-201ENSMUST00000087883 Map7O88735 730 aa18.03■□□□□ 0.48
Col3a1-201ENSMUST00000087883 Cwc22Q8C5N3 908 aaKnown RBP18.02■□□□□ 0.48
Col3a1-201ENSMUST00000087883 Slc4a3P16283 1227 aa18.02■□□□□ 0.48
Col3a1-201ENSMUST00000087883 Casc1Q6TDU8 730 aa18.01■□□□□ 0.47
Col3a1-201ENSMUST00000087883 IqubQ8CDK3 788 aa18■□□□□ 0.47
Col3a1-201ENSMUST00000087883 Mapk8ip3Q9ESN9 1337 aa18■□□□□ 0.47
Col3a1-201ENSMUST00000087883 Adam1bQ8R534 806 aa17.98■□□□□ 0.47
Col3a1-201ENSMUST00000087883 Baz1aO88379 1555 aa17.98■□□□□ 0.47
Col3a1-201ENSMUST00000087883 AU015836B2RUM3 263 aa17.98■□□□□ 0.47
Col3a1-201ENSMUST00000087883 Gm6268A2A3U9 297 aa17.97■□□□□ 0.47
Col3a1-201ENSMUST00000087883 Safb2Q80YR5 991 aaKnown RBP17.97■□□□□ 0.47
Col3a1-201ENSMUST00000087883 Srpk2O54781 681 aaKnown RBP17.97■□□□□ 0.47
Col3a1-201ENSMUST00000087883 Dnttip2Q8R2M2 758 aaKnown RBP17.97■□□□□ 0.47
Col3a1-201ENSMUST00000087883 Znf326O88291 580 aa17.95■□□□□ 0.46
Col3a1-201ENSMUST00000087883 Mroh3A0A1D5RM54 893 aa17.95■□□□□ 0.46
Col3a1-201ENSMUST00000087883 Tnnt2P50752 301 aa17.94■□□□□ 0.46
Col3a1-201ENSMUST00000087883 Exosc9Q9JHI7 438 aaKnown RBP17.94■□□□□ 0.46
Col3a1-201ENSMUST00000087883 PnnO35691 725 aaKnown RBP17.93■□□□□ 0.46
Col3a1-201ENSMUST00000087883 Gm20521D3Z5F7 333 aa17.93■□□□□ 0.46
Col3a1-201ENSMUST00000087883 Chmp4bQ9D8B3 224 aaKnown RBP17.93■□□□□ 0.46
Col3a1-201ENSMUST00000087883 Erich6bQ9D4S6 220 aa17.92■□□□□ 0.46
Col3a1-201ENSMUST00000087883 Supt16hQ920B9 1047 aa17.91■□□□□ 0.46
Col3a1-201ENSMUST00000087883 Znf316Q6PGE4 1016 aa17.91■□□□□ 0.46
Col3a1-201ENSMUST00000087883 Tcerg1Q8CGF7 1100 aaKnown RBP17.91■□□□□ 0.46
Col3a1-201ENSMUST00000087883 Mbd3Q9Z2D8 285 aaKnown RBP17.9■□□□□ 0.46
Col3a1-201ENSMUST00000087883 Eea1Q8BL66 1411 aa17.89■□□□□ 0.45
Col3a1-201ENSMUST00000087883 Wwc2Q6NXJ0 1187 aa17.89■□□□□ 0.45
Col3a1-201ENSMUST00000087883 Hsp90b1P08113 802 aaKnown RBP17.88■□□□□ 0.45
Col3a1-201ENSMUST00000087883 Pes1Q9EQ61 584 aaKnown RBP17.88■□□□□ 0.45
Col3a1-201ENSMUST00000087883 Rwdd1Q9CQK7 243 aa17.87■□□□□ 0.45
Col3a1-201ENSMUST00000087883 KnstrnQ9D9Z1 312 aaKnown RBP17.87■□□□□ 0.45
Col3a1-201ENSMUST00000087883 NudcO35685 332 aaKnown RBP17.86■□□□□ 0.45
Col3a1-201ENSMUST00000087883 Dnai1Q8C0M8 701 aa17.84■□□□□ 0.45
Col3a1-201ENSMUST00000087883 1700019A02RikA0A087WPV9 146 aa17.83■□□□□ 0.45
Col3a1-201ENSMUST00000087883 Rtn4Q99P72 1162 aaKnown RBP17.82■□□□□ 0.44
Col3a1-201ENSMUST00000087883 Ipo9Q91YE6 1041 aa17.81■□□□□ 0.44
Col3a1-201ENSMUST00000087883 Golga3P55937 1487 aa17.8■□□□□ 0.44
Col3a1-201ENSMUST00000087883 MccE9PWI3 1003 aa17.8■□□□□ 0.44
Col3a1-201ENSMUST00000087883 Hspa5P20029 655 aaKnown RBP17.8■□□□□ 0.44
Col3a1-201ENSMUST00000087883 Chmp5Q9D7S9 219 aa17.8■□□□□ 0.44
Col3a1-201ENSMUST00000087883 Stag3O70576 1240 aa17.79■□□□□ 0.44
Col3a1-201ENSMUST00000087883 Clstn1Q9EPL2 979 aa17.79■□□□□ 0.44
Col3a1-201ENSMUST00000087883 MsnP26041 577 aaKnown RBP17.78■□□□□ 0.44
Col3a1-201ENSMUST00000087883 Iqcf3Q9D498 203 aa17.78■□□□□ 0.44
Col3a1-201ENSMUST00000087883 Cnga1P29974 684 aa17.76■□□□□ 0.43
Col3a1-201ENSMUST00000087883 Rrp7aQ9D1C9 280 aaKnown RBP17.76■□□□□ 0.43
Col3a1-201ENSMUST00000087883 Mtus2Q3UHD3 1353 aa17.76■□□□□ 0.43
Col3a1-201ENSMUST00000087883 Mia2Q91ZV0 1396 aa17.76■□□□□ 0.43
Col3a1-201ENSMUST00000087883 Kdm5dQ62240 1548 aa17.76■□□□□ 0.43
Col3a1-201ENSMUST00000087883 Pcmtd1P59913 357 aa17.76■□□□□ 0.43
Col3a1-201ENSMUST00000087883 EspnQ9ET47 871 aa17.76■□□□□ 0.43
Col3a1-201ENSMUST00000087883 Stk24Q99KH8 431 aa17.75■□□□□ 0.43
Col3a1-201ENSMUST00000087883 NgefQ8CHT1 710 aa17.73■□□□□ 0.43
Col3a1-201ENSMUST00000087883 Sh3bp5Q9Z131 463 aa17.72■□□□□ 0.43
Col3a1-201ENSMUST00000087883 Exoc6Q8R313 802 aa17.72■□□□□ 0.43
Col3a1-201ENSMUST00000087883 Speer4f1Q9D5Q6 258 aa17.72■□□□□ 0.43
Col3a1-201ENSMUST00000087883 HnrnpuQ8VEK3 800 aaKnown RBP17.71■□□□□ 0.43
Col3a1-201ENSMUST00000087883 Arhgap27A2AB59 869 aa17.71■□□□□ 0.43
Col3a1-201ENSMUST00000087883 Gm973E9Q295 1059 aa17.71■□□□□ 0.43
Col3a1-201ENSMUST00000087883 Kif15Q6P9L6 1387 aa17.7■□□□□ 0.42
Retrieved 100 of 22,080 RNA–protein pairs in 16.5 ms