RNA–Protein interactions for RNA: ENSMUST00000085546.12

Hmgb1-201, Transcript of High mobility group protein B1, mousemouse

APPRIS P1 TSL 1 (best) BASIC

Gene Hmgb1, Length 2,838 nt, Biotype protein coding, Subcellular localisation Axon, Exosome .

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RNA Protein Prediction (catRAPID) Interaction (Experimental data)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
Hmgb1-201ENSMUST00000085546 Gtf2a1Q99PM3 378 aa13.4□□□□□ -0.26
Hmgb1-201ENSMUST00000085546 Ccer2J3QPU5 274 aa13.38□□□□□ -0.27
Hmgb1-201ENSMUST00000085546 Scaf1Q5U4C3 1256 aaKnown RBP13.38□□□□□ -0.27
Hmgb1-201ENSMUST00000085546 DmtnQ9WV69 405 aa13.36□□□□□ -0.27
Hmgb1-201ENSMUST00000085546 4933416C03RikQ3V063 378 aa13.35□□□□□ -0.27
Hmgb1-201ENSMUST00000085546 Iqcf3Q9D498 203 aa13.35□□□□□ -0.27
Hmgb1-201ENSMUST00000085546 Ncapd3Q6ZQK0 1506 aa13.35□□□□□ -0.27
Hmgb1-201ENSMUST00000085546 Dnttip2Q8R2M2 758 aaKnown RBP13.35□□□□□ -0.27
Hmgb1-201ENSMUST00000085546 NgefQ8CHT1 710 aa13.34□□□□□ -0.27
Hmgb1-201ENSMUST00000085546 Rtn4Q99P72 1162 aaKnown RBP13.34□□□□□ -0.27
Hmgb1-201ENSMUST00000085546 Ccdc88bQ4QRL3 1481 aa13.33□□□□□ -0.27
Hmgb1-201ENSMUST00000085546 Rrp9Q91WM3 475 aaKnown RBP13.31□□□□□ -0.28
Hmgb1-201ENSMUST00000085546 ScribQ80U72 1612 aa13.25□□□□□ -0.29
Hmgb1-201ENSMUST00000085546 Kdm5bQ80Y84 1544 aa13.24□□□□□ -0.29
Hmgb1-201ENSMUST00000085546 DaxxO35613 739 aa13.24□□□□□ -0.29
Hmgb1-201ENSMUST00000085546 Taok2Q6ZQ29 1240 aa13.21□□□□□ -0.29
Hmgb1-201ENSMUST00000085546 TimelessQ9R1X4 1197 aa13.21□□□□□ -0.29
Hmgb1-201ENSMUST00000085546 Golga3P55937 1487 aa13.19□□□□□ -0.3
Hmgb1-201ENSMUST00000085546 AU015836B2RUM3 263 aa13.17□□□□□ -0.3
Hmgb1-201ENSMUST00000085546 Tcerg1Q8CGF7 1100 aaKnown RBP13.17□□□□□ -0.3
Hmgb1-201ENSMUST00000085546 Smg6P61406 1418 aaKnown RBP13.15□□□□□ -0.3
Hmgb1-201ENSMUST00000085546 Rapgef2Q8CHG7 1496 aa13.15□□□□□ -0.3
Hmgb1-201ENSMUST00000085546 Kdm5dQ62240 1548 aa13.15□□□□□ -0.3
Hmgb1-201ENSMUST00000085546 Rbm10Q99KG3 930 aaKnown RBP13.15□□□□□ -0.3
Hmgb1-201ENSMUST00000085546 UacaQ8CGB3 1411 aa13.12□□□□□ -0.31
Hmgb1-201ENSMUST00000085546 Brd4Q9ESU6 1400 aaKnown RBP13.11□□□□□ -0.31
Hmgb1-201ENSMUST00000085546 Anp32bQ9EST5 272 aaKnown RBP13.11□□□□□ -0.31
Hmgb1-201ENSMUST00000085546 Gm13697A2AK42 830 aa13.09□□□□□ -0.31
Hmgb1-201ENSMUST00000085546 Pdlim2Q8R1G6 349 aa13.09□□□□□ -0.31
Hmgb1-201ENSMUST00000085546 Znf692Q3U381 531 aa13.08□□□□□ -0.32
Hmgb1-201ENSMUST00000085546 Armcx1Q9CX83 456 aa13.08□□□□□ -0.32
Hmgb1-201ENSMUST00000085546 Top2bQ64511 1612 aa13.07□□□□□ -0.32
Hmgb1-201ENSMUST00000085546 Eif5bQ05D44 1216 aaKnown RBP13.07□□□□□ -0.32
Hmgb1-201ENSMUST00000085546 Chrna2Q91X60 512 aa13.04□□□□□ -0.32
Hmgb1-201ENSMUST00000085546 Eid3Q3V124 375 aa13.03□□□□□ -0.32
Hmgb1-201ENSMUST00000085546 TchhA0A0B4J1F9 1599 aa13.03□□□□□ -0.32
Hmgb1-201ENSMUST00000085546 Ncoa2Q61026 1462 aa13.03□□□□□ -0.32
Hmgb1-201ENSMUST00000085546 Slc4a3P16283 1227 aa13.02□□□□□ -0.33
Hmgb1-201ENSMUST00000085546 ChgaP26339 463 aaKnown RBP13.02□□□□□ -0.33
Hmgb1-201ENSMUST00000085546 Arhgap27A2AB59 869 aa13.01□□□□□ -0.33
Hmgb1-201ENSMUST00000085546 Camsap2Q8C1B1 1461 aa13.01□□□□□ -0.33
Hmgb1-201ENSMUST00000085546 Vgll3P85442 326 aa13□□□□□ -0.33
Hmgb1-201ENSMUST00000085546 Kif20aP97329 887 aa13□□□□□ -0.33
Hmgb1-201ENSMUST00000085546 NclP09405 707 aaKnown RBP12.98□□□□□ -0.33
Hmgb1-201ENSMUST00000085546 Nom1Q3UFM5 854 aaKnown RBP12.98□□□□□ -0.33
Hmgb1-201ENSMUST00000085546 Zfp91Q62511 572 aa12.98□□□□□ -0.33
Hmgb1-201ENSMUST00000085546 Mink1Q9JM52 1308 aa12.97□□□□□ -0.33
Hmgb1-201ENSMUST00000085546 Tex2Q6ZPJ0 1128 aaKnown RBP12.97□□□□□ -0.33
Hmgb1-201ENSMUST00000085546 Zbtb4Q5F293 982 aa12.97□□□□□ -0.33
Hmgb1-201ENSMUST00000085546 Mre11Q61216 706 aa12.97□□□□□ -0.33
Hmgb1-201ENSMUST00000085546 Slc24a1Q91WD8 1130 aa12.97□□□□□ -0.33
Hmgb1-201ENSMUST00000085546 Cep162Q6ZQ06 1403 aa12.96□□□□□ -0.33
Hmgb1-201ENSMUST00000085546 Phf14Q9D4H9 881 aa12.96□□□□□ -0.33
Hmgb1-201ENSMUST00000085546 Baz1bQ9Z277 1479 aa12.96□□□□□ -0.33
Hmgb1-201ENSMUST00000085546 Nkx1-2P42580 305 aa12.96□□□□□ -0.34
Hmgb1-201ENSMUST00000085546 Dusp27Q148W8 1138 aa12.96□□□□□ -0.34
Hmgb1-201ENSMUST00000085546 Cul9Q80TT8 1865 aa12.94□□□□□ -0.34
Hmgb1-201ENSMUST00000085546 4933402E13RikQ9D4D2 429 aa12.93□□□□□ -0.34
Hmgb1-201ENSMUST00000085546 Efcab5A0JP43 1406 aa12.91□□□□□ -0.34
Hmgb1-201ENSMUST00000085546 Fam43aQ8BUP8 424 aa12.91□□□□□ -0.34
Hmgb1-201ENSMUST00000085546 Sin3aQ60520 1274 aaKnown RBP12.9□□□□□ -0.34
Hmgb1-201ENSMUST00000085546 P3h3Q8CG70 732 aa12.9□□□□□ -0.34
Hmgb1-201ENSMUST00000085546 Sart3Q9JLI8 962 aaKnown RBP12.9□□□□□ -0.34
Hmgb1-201ENSMUST00000085546 Clip1Q922J3 1391 aa12.9□□□□□ -0.34
Hmgb1-201ENSMUST00000085546 Plekhg3Q4VAC9 1341 aa12.89□□□□□ -0.35
Hmgb1-201ENSMUST00000085546 Ythdc1E9Q5K9 736 aaKnown RBP12.88□□□□□ -0.35
Hmgb1-201ENSMUST00000085546 Stard8Q8K031 1019 aa12.88□□□□□ -0.35
Hmgb1-201ENSMUST00000085546 Mroh3A0A1D5RM54 893 aa12.87□□□□□ -0.35
Hmgb1-201ENSMUST00000085546 CanxP35564 591 aaKnown RBP12.87□□□□□ -0.35
Hmgb1-201ENSMUST00000085546 Eif4g1Q6NZJ6 1600 aaKnown RBP12.87□□□□□ -0.35
Hmgb1-201ENSMUST00000085546 Tshz2Q68FE9 1030 aa12.86□□□□□ -0.35
Hmgb1-201ENSMUST00000085546 EprsQ8CGC7 1512 aaKnown RBP12.86□□□□□ -0.35
Hmgb1-201ENSMUST00000085546 Ankrd36D3Z4K0 1415 aa12.85□□□□□ -0.35
Hmgb1-201ENSMUST00000085546 Synj1Q8CHC4 1574 aa12.85□□□□□ -0.35
Hmgb1-201ENSMUST00000085546 Fyco1Q8VDC1 1437 aa12.85□□□□□ -0.35
Hmgb1-201ENSMUST00000085546 Eea1Q8BL66 1411 aa12.84□□□□□ -0.35
Hmgb1-201ENSMUST00000085546 Top2aQ01320 1528 aaKnown RBP12.84□□□□□ -0.35
Hmgb1-201ENSMUST00000085546 Slc4a2P13808 1237 aaKnown RBP12.84□□□□□ -0.35
Hmgb1-201ENSMUST00000085546 Mrs2Q5NCE8 434 aa12.82□□□□□ -0.36
Hmgb1-201ENSMUST00000085546 Dnai1Q8C0M8 701 aa12.82□□□□□ -0.36
Hmgb1-201ENSMUST00000085546 TnikP83510 1323 aa12.82□□□□□ -0.36
Hmgb1-201ENSMUST00000085546 Kcnh8P59111 1102 aa12.82□□□□□ -0.36
Hmgb1-201ENSMUST00000085546 Rrp12Q6P5B0 1295 aaKnown RBP12.8□□□□□ -0.36
Hmgb1-201ENSMUST00000085546 EspnQ9ET47 871 aa12.8□□□□□ -0.36
Hmgb1-201ENSMUST00000085546 Tpm2P58774 284 aa12.8□□□□□ -0.36
Hmgb1-201ENSMUST00000085546 Pprc1Q6NZN1 1644 aa12.8□□□□□ -0.36
Hmgb1-201ENSMUST00000085546 Paxip1Q6NZQ4 1056 aa12.79□□□□□ -0.36
Hmgb1-201ENSMUST00000085546 Gm13695A2AK44 830 aa12.79□□□□□ -0.36
Hmgb1-201ENSMUST00000085546 PogkQ80TC5 607 aa12.78□□□□□ -0.36
Hmgb1-201ENSMUST00000085546 Ccdc18Q640L5 1455 aa12.78□□□□□ -0.36
Hmgb1-201ENSMUST00000085546 Clcn1Q64347 994 aa12.77□□□□□ -0.36
Hmgb1-201ENSMUST00000085546 Cc2d2aQ8CFW7 1633 aa12.77□□□□□ -0.37
Hmgb1-201ENSMUST00000085546 Irf5P56477 497 aa12.76□□□□□ -0.37
Hmgb1-201ENSMUST00000085546 L3mbtl2P59178 703 aa12.75□□□□□ -0.37
Hmgb1-201ENSMUST00000085546 Ppm1gQ61074 542 aa12.75□□□□□ -0.37
Hmgb1-201ENSMUST00000085546 Prkrip1Q9CWV6 186 aaKnown RBP12.75□□□□□ -0.37
Hmgb1-201ENSMUST00000085546 Fmn1Q05860 1466 aa12.75□□□□□ -0.37
Hmgb1-201ENSMUST00000085546 Cttnbp2B9EJA2 1648 aa12.74□□□□□ -0.37
Hmgb1-201ENSMUST00000085546 Camsap1A2AHC3 1581 aa12.74□□□□□ -0.37
Hmgb1-201ENSMUST00000085546 DekQ7TNV0 380 aaKnown RBP12.73□□□□□ -0.37
Retrieved 100 of 22,080 RNA–protein pairs in 14.9 ms