RNA–Protein interactions for RNA: ENST00000545856.5

PRPF40A-212, Transcript of pre-mRNA processing factor 40 homolog A, humanhuman

TSL 1 (best)

Gene PRPF40A, Length 1,358 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PRPF40A-212ENST00000545856 C11orf72Q8NBR9 251 aa11.56□□□□□ -0.56
PRPF40A-212ENST00000545856 IL17DQ8TAD2 202 aa11.56□□□□□ -0.56
PRPF40A-212ENST00000545856 IGHV4-4A0A075B6R2 117 aa11.55□□□□□ -0.56
PRPF40A-212ENST00000545856 RNASE3P12724 160 aaKnown RBP11.55□□□□□ -0.56
PRPF40A-212ENST00000545856 ZNF575Q86XF7 245 aa11.55□□□□□ -0.56
PRPF40A-212ENST00000545856 SYT8Q8NBV8 401 aa11.55□□□□□ -0.56
PRPF40A-212ENST00000545856 TMSB15BA0A087X1C1 80 aa11.54□□□□□ -0.56
PRPF40A-212ENST00000545856 LYRM9A8MSI8 78 aa11.54□□□□□ -0.56
PRPF40A-212ENST00000545856 HIGD1CA8MV81 97 aa11.54□□□□□ -0.56
PRPF40A-212ENST00000545856 NXPH4O95158 308 aa11.54□□□□□ -0.56
PRPF40A-212ENST00000545856 S100A8P05109 93 aa11.54□□□□□ -0.56
PRPF40A-212ENST00000545856 ARMS2P0C7Q2 107 aa11.54□□□□□ -0.56
PRPF40A-212ENST00000545856 ZFP82Q8N141 532 aa11.54□□□□□ -0.56
PRPF40A-212ENST00000545856 Q8NAQ8 132 aa11.54□□□□□ -0.56
PRPF40A-212ENST00000545856 SMCO4Q9NRQ5 59 aa11.54□□□□□ -0.56
PRPF40A-212ENST00000545856 PHLDA3Q9Y5J5 127 aa11.54□□□□□ -0.56
PRPF40A-212ENST00000545856 TIMM8BQ9Y5J9 83 aaPredicted RBP11.54□□□□□ -0.56
PRPF40A-212ENST00000545856 TENM3Q9P273 2699 aa11.54□□□□□ -0.56
PRPF40A-212ENST00000545856 H3BVH4 76 aa11.54□□□□□ -0.56
PRPF40A-212ENST00000545856 M0R2P5 195 aa11.54□□□□□ -0.56
PRPF40A-212ENST00000545856 GNRH2O43555 120 aa11.54□□□□□ -0.56
PRPF40A-212ENST00000545856 HTN1P15515 57 aa11.54□□□□□ -0.56
PRPF40A-212ENST00000545856 RASL11AQ6T310 242 aa11.54□□□□□ -0.56
PRPF40A-212ENST00000545856 GTSF1Q8WW33 167 aa11.54□□□□□ -0.56
PRPF40A-212ENST00000545856 STAB2Q8WWQ8 2551 aa11.53□□□□□ -0.56
PRPF40A-212ENST00000545856 MUC4Q99102 2169 aa11.53□□□□□ -0.56
PRPF40A-212ENST00000545856 DNAH9Q9NYC9 4486 aa11.53□□□□□ -0.56
PRPF40A-212ENST00000545856 A0A1B0GUT8 65 aa11.53□□□□□ -0.56
PRPF40A-212ENST00000545856 GRIFINA4D1Z8 144 aa11.53□□□□□ -0.56
PRPF40A-212ENST00000545856 CIDEAO60543 219 aa11.53□□□□□ -0.56
PRPF40A-212ENST00000545856 COX19Q49B96 90 aa11.53□□□□□ -0.56
PRPF40A-212ENST00000545856 C18orf15Q96N68 181 aa11.53□□□□□ -0.56
PRPF40A-212ENST00000545856 FBN3Q75N90 2809 aa11.52□□□□□ -0.57
PRPF40A-212ENST00000545856 IGHV4-28A0A0C4DH34 117 aa11.52□□□□□ -0.57
PRPF40A-212ENST00000545856 RIGQ13278 110 aa11.52□□□□□ -0.57
PRPF40A-212ENST00000545856 NUP35Q8NFH5 326 aa11.52□□□□□ -0.57
PRPF40A-212ENST00000545856 RASL10AQ92737 203 aa11.52□□□□□ -0.57
PRPF40A-212ENST00000545856 GSN-AS1Q9NRJ2 163 aa11.52□□□□□ -0.57
PRPF40A-212ENST00000545856 MDFICQ9P1T7 246 aa11.52□□□□□ -0.57
PRPF40A-212ENST00000545856 PLAC8L1A1L4L8 177 aa11.51□□□□□ -0.57
PRPF40A-212ENST00000545856 SPINK4O60575 86 aa11.51□□□□□ -0.57
PRPF40A-212ENST00000545856 TRGC1P0CF51 173 aa11.51□□□□□ -0.57
PRPF40A-212ENST00000545856 AZU1P20160 251 aa11.51□□□□□ -0.57
PRPF40A-212ENST00000545856 SPANXN1Q5VSR9 72 aa11.51□□□□□ -0.57
PRPF40A-212ENST00000545856 LYZL1Q6UWQ5 148 aa11.51□□□□□ -0.57
PRPF40A-212ENST00000545856 PRKDCP78527 4128 aaKnown RBP11.5□□□□□ -0.57
PRPF40A-212ENST00000545856 TRBV24-1A0A075B6N3 115 aa11.5□□□□□ -0.57
PRPF40A-212ENST00000545856 A8MWV9 139 aa11.5□□□□□ -0.57
PRPF40A-212ENST00000545856 GZMBP10144 247 aa11.5□□□□□ -0.57
PRPF40A-212ENST00000545856 LINC00612Q8N6U2 182 aa11.5□□□□□ -0.57
PRPF40A-212ENST00000545856 ZNF876PQ49A33 203 aa11.49□□□□□ -0.57
PRPF40A-212ENST00000545856 ATRAIDQ6UW56 229 aa11.49□□□□□ -0.57
PRPF40A-212ENST00000545856 SMIM15Q7Z3B0 74 aa11.49□□□□□ -0.57
PRPF40A-212ENST00000545856 PGLYRP4Q96LB8 373 aa11.49□□□□□ -0.57
PRPF40A-212ENST00000545856 AP1S3Q96PC3 154 aa11.49□□□□□ -0.57
PRPF40A-212ENST00000545856 TPPP3Q9BW30 176 aa11.49□□□□□ -0.57
PRPF40A-212ENST00000545856 SPART-AS1P0CW21 52 aa11.48□□□□□ -0.57
PRPF40A-212ENST00000545856 OR10AG1Q8NH19 301 aa11.48□□□□□ -0.57
PRPF40A-212ENST00000545856 FRZBQ92765 325 aa11.48□□□□□ -0.57
PRPF40A-212ENST00000545856 HUWE1Q7Z6Z7 4374 aaKnown RBP11.47□□□□□ -0.57
PRPF40A-212ENST00000545856 RHODO00212 210 aa11.47□□□□□ -0.57
PRPF40A-212ENST00000545856 HBBP68871 147 aa11.47□□□□□ -0.57
PRPF40A-212ENST00000545856 GATD1Q8NB37 220 aa11.47□□□□□ -0.57
PRPF40A-212ENST00000545856 NOP10Q9NPE3 64 aaKnown RBP11.47□□□□□ -0.57
PRPF40A-212ENST00000545856 DKK2Q9UBU2 259 aa11.47□□□□□ -0.57
PRPF40A-212ENST00000545856 COL7A1Q02388 2944 aa11.47□□□□□ -0.57
PRPF40A-212ENST00000545856 A0A1B0GXF2 115 aa11.46□□□□□ -0.57
PRPF40A-212ENST00000545856 MT-ND6P03923 174 aa11.46□□□□□ -0.57
PRPF40A-212ENST00000545856 NTF3P20783 257 aa11.46□□□□□ -0.57
PRPF40A-212ENST00000545856 ELOBQ15370 118 aa11.46□□□□□ -0.57
PRPF40A-212ENST00000545856 ZFP2Q6ZN57 461 aa11.46□□□□□ -0.57
PRPF40A-212ENST00000545856 M0R381 172 aa11.45□□□□□ -0.58
PRPF40A-212ENST00000545856 FAM3BP58499 235 aaPredicted RBP11.45□□□□□ -0.58
PRPF40A-212ENST00000545856 TMEM191AQ9H0A3 160 aa11.45□□□□□ -0.58
PRPF40A-212ENST00000545856 RETNQ9HD89 108 aa11.45□□□□□ -0.58
PRPF40A-212ENST00000545856 TRGV1A0A0A0MS02 117 aa11.44□□□□□ -0.58
PRPF40A-212ENST00000545856 TRAV4A0A0B4J268 109 aa11.44□□□□□ -0.58
PRPF40A-212ENST00000545856 TWIST1Q15672 202 aa11.44□□□□□ -0.58
PRPF40A-212ENST00000545856 FAM222AQ5U5X8 452 aa11.44□□□□□ -0.58
PRPF40A-212ENST00000545856 DMRTA1Q5VZB9 504 aa11.44□□□□□ -0.58
PRPF40A-212ENST00000545856 YPEL4Q96NS1 127 aa11.44□□□□□ -0.58
PRPF40A-212ENST00000545856 URGCP-MRPS24S4R325 110 aa11.44□□□□□ -0.58
PRPF40A-212ENST00000545856 NACAE9PAV3 2078 aa11.44□□□□□ -0.58
PRPF40A-212ENST00000545856 PRM2P04554 102 aa11.43□□□□□ -0.58
PRPF40A-212ENST00000545856 SMIM17P0DL12 118 aa11.43□□□□□ -0.58
PRPF40A-212ENST00000545856 DPH3P1Q9H4G8 78 aa11.43□□□□□ -0.58
PRPF40A-212ENST00000545856 RS1O15537 224 aa11.42□□□□□ -0.58
PRPF40A-212ENST00000545856 HLA-DQA1P01909 254 aa11.42□□□□□ -0.58
PRPF40A-212ENST00000545856 TMEM88Q6PEY1 159 aa11.42□□□□□ -0.58
PRPF40A-212ENST00000545856 Q6ZTI0 123 aa11.42□□□□□ -0.58
PRPF40A-212ENST00000545856 CBLN2Q8IUK8 224 aa11.42□□□□□ -0.58
PRPF40A-212ENST00000545856 GNB1LQ9BYB4 327 aa11.42□□□□□ -0.58
PRPF40A-212ENST00000545856 TRGV2A0A075B6R0 118 aa11.41□□□□□ -0.58
PRPF40A-212ENST00000545856 EMP1P54849 157 aa11.41□□□□□ -0.58
PRPF40A-212ENST00000545856 DAD1P61803 113 aa11.41□□□□□ -0.58
PRPF40A-212ENST00000545856 SLAQ13239 276 aa11.41□□□□□ -0.58
PRPF40A-212ENST00000545856 MRPL54Q6P161 138 aaKnown RBP11.41□□□□□ -0.58
PRPF40A-212ENST00000545856 MRPL16Q9NX20 251 aaKnown RBP11.41□□□□□ -0.58
PRPF40A-212ENST00000545856 CFAP126Q5VTH2 177 aa11.41□□□□□ -0.58
PRPF40A-212ENST00000545856 POM121L12Q8N7R1 296 aa11.41□□□□□ -0.58
Retrieved 100 of 20,778 RNA–protein pairs in 75.5 ms