RNA–Protein interactions for RNA: ENST00000622516.4

CUX1-221, Transcript of cut like homeobox 1, humanhuman

TSL 1 (best) BASIC

Gene CUX1, Length 2,990 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Exosome, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1-221ENST00000622516 APCP25054 2843 aa8.22□□□□□ -1.09
CUX1-221ENST00000622516 TRAV41A0A0B4J266 112 aa8.22□□□□□ -1.09
CUX1-221ENST00000622516 KIR2DL5BA0A0G2JN68 375 aa8.22□□□□□ -1.09
CUX1-221ENST00000622516 KIR2DL5BA0A0G2JPC4 375 aa8.22□□□□□ -1.09
CUX1-221ENST00000622516 C20orf202A1L168 122 aa8.22□□□□□ -1.09
CUX1-221ENST00000622516 ARMS2P0C7Q2 107 aa8.22□□□□□ -1.09
CUX1-221ENST00000622516 ZNF138P52744 262 aa8.22□□□□□ -1.09
CUX1-221ENST00000622516 PAFAH1B2P68402 229 aa8.22□□□□□ -1.09
CUX1-221ENST00000622516 ERCC8Q13216 396 aa8.22□□□□□ -1.09
CUX1-221ENST00000622516 RBPMS2Q6ZRY4 209 aaKnown RBP8.22□□□□□ -1.09
CUX1-221ENST00000622516 KIR2DL5AQ8N109 375 aa8.22□□□□□ -1.09
CUX1-221ENST00000622516 WIPF2Q8TF74 440 aaPredicted RBP8.22□□□□□ -1.09
CUX1-221ENST00000622516 SMIM12Q96EX1 92 aa8.22□□□□□ -1.09
CUX1-221ENST00000622516 ZFAND3Q9H8U3 227 aa8.22□□□□□ -1.09
CUX1-221ENST00000622516 NRN1Q9NPD7 142 aa8.22□□□□□ -1.09
CUX1-221ENST00000622516 ZNF492Q9P255 531 aa8.22□□□□□ -1.09
CUX1-221ENST00000622516 MOB4Q9Y3A3 225 aa8.22□□□□□ -1.09
CUX1-221ENST00000622516 CLPSL1A2RUU4 121 aa8.21□□□□□ -1.09
CUX1-221ENST00000622516 MSMBP08118 114 aa8.21□□□□□ -1.09
CUX1-221ENST00000622516 CSN1S1P47710 185 aa8.21□□□□□ -1.09
CUX1-221ENST00000622516 OR10J3Q5JRS4 329 aa8.21□□□□□ -1.09
CUX1-221ENST00000622516 RNASEKQ6P5S7 137 aaKnown RBP8.21□□□□□ -1.09
CUX1-221ENST00000622516 LYPD1Q8N2G4 141 aa8.21□□□□□ -1.09
CUX1-221ENST00000622516 ALKBH7Q9BT30 221 aaPredicted RBP8.21□□□□□ -1.09
CUX1-221ENST00000622516 SETD2Q9BYW2 2564 aaPredicted RBP8.21□□□□□ -1.1
CUX1-221ENST00000622516 BUB3O43684 328 aa8.21□□□□□ -1.1
CUX1-221ENST00000622516 TRGV3P03979 118 aa8.21□□□□□ -1.1
CUX1-221ENST00000622516 ESDP10768 282 aa8.21□□□□□ -1.1
CUX1-221ENST00000622516 COX19Q49B96 90 aa8.21□□□□□ -1.1
CUX1-221ENST00000622516 ZNF479Q96JC4 524 aa8.21□□□□□ -1.1
CUX1-221ENST00000622516 KCNS1Q96KK3 526 aa8.21□□□□□ -1.1
CUX1-221ENST00000622516 ZFP30Q9Y2G7 519 aa8.21□□□□□ -1.1
CUX1-221ENST00000622516 SORL1Q92673 2214 aa8.21□□□□□ -1.1
CUX1-221ENST00000622516 NF1P21359 2839 aa8.2□□□□□ -1.1
CUX1-221ENST00000622516 NPIPB6E9PJ23 425 aa8.2□□□□□ -1.1
CUX1-221ENST00000622516 KLK15Q9H2R5 256 aa8.2□□□□□ -1.1
CUX1-221ENST00000622516 PAM16Q9Y3D7 125 aa8.2□□□□□ -1.1
CUX1-221ENST00000622516 TMEM8BA6NDV4 472 aa8.2□□□□□ -1.1
CUX1-221ENST00000622516 ZNF324O75467 553 aaPredicted RBP8.2□□□□□ -1.1
CUX1-221ENST00000622516 ZNF80P51504 273 aaPredicted RBP8.2□□□□□ -1.1
CUX1-221ENST00000622516 ATP5G2Q06055 141 aa8.2□□□□□ -1.1
CUX1-221ENST00000622516 PDE6HQ13956 83 aa8.2□□□□□ -1.1
CUX1-221ENST00000622516 LCN12Q6JVE5 192 aa8.2□□□□□ -1.1
CUX1-221ENST00000622516 EEF1AKMT3Q96AZ1 226 aa8.2□□□□□ -1.1
CUX1-221ENST00000622516 SCGB2A1O75556 95 aa8.19□□□□□ -1.1
CUX1-221ENST00000622516 CT45A10P0DMU9 189 aa8.19□□□□□ -1.1
CUX1-221ENST00000622516 SHISA2Q6UWI4 295 aa8.19□□□□□ -1.1
CUX1-221ENST00000622516 TIMM8BQ9Y5J9 83 aaPredicted RBP8.19□□□□□ -1.1
CUX1-221ENST00000622516 CSN3P07498 182 aa8.19□□□□□ -1.1
CUX1-221ENST00000622516 PSG9Q00887 426 aa8.19□□□□□ -1.1
CUX1-221ENST00000622516 SRSF1Q07955 248 aaKnown RBP eCLIP8.19□□□□□ -1.1
CUX1-221ENST00000622516 CT83Q5H943 113 aa8.19□□□□□ -1.1
CUX1-221ENST00000622516 COL5A1-AS1Q5SY13 56 aa8.19□□□□□ -1.1
CUX1-221ENST00000622516 RASL11AQ6T310 242 aa8.19□□□□□ -1.1
CUX1-221ENST00000622516 NIT1Q86X76 327 aa8.19□□□□□ -1.1
CUX1-221ENST00000622516 ATOH7Q8N100 152 aa8.19□□□□□ -1.1
CUX1-221ENST00000622516 IGKV3-7A0A075B6H7 116 aa8.19□□□□□ -1.1
CUX1-221ENST00000622516 SH2D1AO60880 128 aa8.19□□□□□ -1.1
CUX1-221ENST00000622516 HSBP1O75506 76 aa8.19□□□□□ -1.1
CUX1-221ENST00000622516 KRTAP10-9P60411 292 aa8.19□□□□□ -1.1
CUX1-221ENST00000622516 UNQ9165/PRO28630Q6UXU0 137 aa8.19□□□□□ -1.1
CUX1-221ENST00000622516 ATP5L2Q7Z4Y8 100 aa8.19□□□□□ -1.1
CUX1-221ENST00000622516 PRR25Q96S07 402 aa8.19□□□□□ -1.1
CUX1-221ENST00000622516 TENM4Q6N022 2769 aa8.18□□□□□ -1.1
CUX1-221ENST00000622516 CCL25O15444 150 aa8.18□□□□□ -1.1
CUX1-221ENST00000622516 TFPI2P48307 235 aa8.18□□□□□ -1.1
CUX1-221ENST00000622516 URB1-AS1Q96HZ7 61 aa8.18□□□□□ -1.1
CUX1-221ENST00000622516 DEFB1P60022 68 aa8.18□□□□□ -1.1
CUX1-221ENST00000622516 UNQ5830/PRO19650/PRO19816Q6UY13 95 aa8.18□□□□□ -1.1
CUX1-221ENST00000622516 MEGF9Q9H1U4 602 aa8.18□□□□□ -1.1
CUX1-221ENST00000622516 A0A1B0GUT8 65 aa8.17□□□□□ -1.1
CUX1-221ENST00000622516 Q6ZQT7 251 aa8.17□□□□□ -1.1
CUX1-221ENST00000622516 GFRA4Q9GZZ7 299 aa8.17□□□□□ -1.1
CUX1-221ENST00000622516 PRRC2AP48634 2157 aaKnown RBP8.17□□□□□ -1.1
CUX1-221ENST00000622516 TRBV7-1A0A0A6YYK4 115 aa8.17□□□□□ -1.1
CUX1-221ENST00000622516 TMEM213A2RRL7 107 aa8.17□□□□□ -1.1
CUX1-221ENST00000622516 TMEM189A5PLL7 270 aa8.17□□□□□ -1.1
CUX1-221ENST00000622516 M0R2Z0 102 aa8.17□□□□□ -1.1
CUX1-221ENST00000622516 C3orf79P0CE67 100 aa8.17□□□□□ -1.1
CUX1-221ENST00000622516 PPIFP30405 207 aaKnown RBP8.17□□□□□ -1.1
CUX1-221ENST00000622516 LYZL1Q6UWQ5 148 aa8.17□□□□□ -1.1
CUX1-221ENST00000622516 METTL26Q96S19 204 aa8.17□□□□□ -1.1
CUX1-221ENST00000622516 MIEN1Q9BRT3 115 aa8.17□□□□□ -1.1
CUX1-221ENST00000622516 B4DSR2 109 aa8.16□□□□□ -1.1
CUX1-221ENST00000622516 TGFAP01135 160 aa8.16□□□□□ -1.1
CUX1-221ENST00000622516 ARL3P36405 182 aa8.16□□□□□ -1.1
CUX1-221ENST00000622516 ZNF843Q8N446 348 aa8.16□□□□□ -1.1
CUX1-221ENST00000622516 Q8N976 141 aa8.16□□□□□ -1.1
CUX1-221ENST00000622516 OR4B1Q8NGF8 309 aa8.16□□□□□ -1.1
CUX1-221ENST00000622516 ACANP16112 2415 aa8.16□□□□□ -1.1
CUX1-221ENST00000622516 LOC102724200A0A096LPH7 203 aaPredicted RBP8.16□□□□□ -1.1
CUX1-221ENST00000622516 TRBV6-1A0A0K0K1D8 114 aa8.16□□□□□ -1.1
CUX1-221ENST00000622516 FAM162BQ5T6X4 162 aa8.16□□□□□ -1.1
CUX1-221ENST00000622516 C10orf99Q6UWK7 81 aa8.16□□□□□ -1.1
CUX1-221ENST00000622516 IL17RELQ6ZVW7 336 aa8.16□□□□□ -1.1
CUX1-221ENST00000622516 BORCS7Q96B45 105 aa8.16□□□□□ -1.1
CUX1-221ENST00000622516 IGHV4-59P01825 116 aa8.16□□□□□ -1.1
CUX1-221ENST00000622516 ORM1P02763 201 aa8.16□□□□□ -1.1
CUX1-221ENST00000622516 LINC00173Q6ZV60 143 aa8.16□□□□□ -1.1
CUX1-221ENST00000622516 RBM14-RBM4A0A0A0MSL8 147 aaKnown RBP8.15□□□□□ -1.1
Retrieved 100 of 20,778 RNA–protein pairs in 140.7 ms