RNA–Protein interactions for RNA: ENST00000588617.1

VMP1-208, Transcript of vacuole membrane protein 1, humanhuman

TSL 4

Gene VMP1, Length 884 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VMP1-208ENST00000588617 LAMB2P55268 1798 aa3.6□□□□□ -1.83
VMP1-208ENST00000588617 RGPD4Q7Z3J3 1758 aa3.6□□□□□ -1.83
VMP1-208ENST00000588617 AFDNP55196 1824 aaKnown RBP3.6□□□□□ -1.83
VMP1-208ENST00000588617 BTAF1O14981 1849 aa3.59□□□□□ -1.83
VMP1-208ENST00000588617 MEIKINA0A087WXM9 373 aa3.59□□□□□ -1.83
VMP1-208ENST00000588617 J3KT08 172 aa3.59□□□□□ -1.83
VMP1-208ENST00000588617 ARPC5O15511 151 aa3.59□□□□□ -1.83
VMP1-208ENST00000588617 SARNPP82979 210 aaKnown RBP3.59□□□□□ -1.83
VMP1-208ENST00000588617 LCE3AQ5TA76 89 aa3.59□□□□□ -1.83
VMP1-208ENST00000588617 OR4K15Q8NH41 348 aa3.59□□□□□ -1.83
VMP1-208ENST00000588617 NUMA1Q14980 2115 aa3.59□□□□□ -1.84
VMP1-208ENST00000588617 DUOX1Q9NRD9 1551 aa3.59□□□□□ -1.84
VMP1-208ENST00000588617 PROSCO94903 275 aa3.58□□□□□ -1.84
VMP1-208ENST00000588617 IFNA4P05014 189 aa3.58□□□□□ -1.84
VMP1-208ENST00000588617 ASAH2BP0C7U1 165 aa3.58□□□□□ -1.84
VMP1-208ENST00000588617 ZNF705BP0CI00 300 aaPredicted RBP3.58□□□□□ -1.84
VMP1-208ENST00000588617 FABP2P12104 132 aa3.58□□□□□ -1.84
VMP1-208ENST00000588617 MAFIPQ8WZ33 124 aa3.58□□□□□ -1.84
VMP1-208ENST00000588617 DDX60Q8IY21 1712 aaKnown RBP3.58□□□□□ -1.84
VMP1-208ENST00000588617 ARAP2Q8WZ64 1704 aa3.58□□□□□ -1.84
VMP1-208ENST00000588617 NUP98P52948 1817 aa3.58□□□□□ -1.84
VMP1-208ENST00000588617 CCDC88CQ9P219 2028 aa3.58□□□□□ -1.84
VMP1-208ENST00000588617 KPNA4O00629 521 aaPredicted RBP3.57□□□□□ -1.84
VMP1-208ENST00000588617 UBL3O95164 117 aa3.57□□□□□ -1.84
VMP1-208ENST00000588617 MIFP14174 115 aa3.57□□□□□ -1.84
VMP1-208ENST00000588617 RPL35P42766 123 aaKnown RBP3.57□□□□□ -1.84
VMP1-208ENST00000588617 SSR2P43308 183 aa3.57□□□□□ -1.84
VMP1-208ENST00000588617 PATE2Q6UY27 113 aa3.57□□□□□ -1.84
VMP1-208ENST00000588617 Q8IYB0 196 aa3.57□□□□□ -1.84
VMP1-208ENST00000588617 OR5D16Q8NGK9 328 aa3.57□□□□□ -1.84
VMP1-208ENST00000588617 TCEAL2Q9H3H9 227 aaPredicted RBP3.57□□□□□ -1.84
VMP1-208ENST00000588617 CACYBPQ9HB71 228 aaKnown RBP3.57□□□□□ -1.84
VMP1-208ENST00000588617 SCN8AQ9UQD0 1980 aa3.57□□□□□ -1.84
VMP1-208ENST00000588617 SBF1O95248 1867 aa3.56□□□□□ -1.84
VMP1-208ENST00000588617 SBF2Q86WG5 1849 aa3.56□□□□□ -1.84
VMP1-208ENST00000588617 C4AP0C0L4 1744 aa3.56□□□□□ -1.84
VMP1-208ENST00000588617 OVOL1O14753 267 aa3.56□□□□□ -1.84
VMP1-208ENST00000588617 LYZL6O75951 148 aa3.56□□□□□ -1.84
VMP1-208ENST00000588617 GPX2P18283 190 aa3.56□□□□□ -1.84
VMP1-208ENST00000588617 SDC2P34741 201 aa3.56□□□□□ -1.84
VMP1-208ENST00000588617 PHF5AQ7RTV0 110 aaKnown RBP3.56□□□□□ -1.84
VMP1-208ENST00000588617 C14orf132Q9NPU4 83 aa3.56□□□□□ -1.84
VMP1-208ENST00000588617 GOLGB1Q14789 3259 aaKnown RBP3.56□□□□□ -1.84
VMP1-208ENST00000588617 EML6Q6ZMW3 1958 aa3.56□□□□□ -1.84
VMP1-208ENST00000588617 TAF1LQ8IZX4 1826 aa3.56□□□□□ -1.84
VMP1-208ENST00000588617 NRXN2Q9P2S2 1712 aa3.56□□□□□ -1.84
VMP1-208ENST00000588617 DEGS1O15121 323 aa3.55□□□□□ -1.84
VMP1-208ENST00000588617 RER1O15258 196 aa3.55□□□□□ -1.84
VMP1-208ENST00000588617 DHFRP00374 187 aa3.55□□□□□ -1.84
VMP1-208ENST00000588617 CRPP02741 224 aa3.55□□□□□ -1.84
VMP1-208ENST00000588617 AKR1C3P42330 323 aa3.55□□□□□ -1.84
VMP1-208ENST00000588617 NDUFA6P56556 154 aa3.55□□□□□ -1.84
VMP1-208ENST00000588617 RPS28P62857 69 aaKnown RBP3.55□□□□□ -1.84
VMP1-208ENST00000588617 OR8B8Q15620 311 aa3.55□□□□□ -1.84
VMP1-208ENST00000588617 Q1T7F1 81 aa3.55□□□□□ -1.84
VMP1-208ENST00000588617 LZICQ8WZA0 190 aa3.55□□□□□ -1.84
VMP1-208ENST00000588617 RETNLBQ9BQ08 111 aa3.55□□□□□ -1.84
VMP1-208ENST00000588617 TAS2R7Q9NYW3 318 aa3.55□□□□□ -1.84
VMP1-208ENST00000588617 GSKIPQ9P0R6 139 aa3.55□□□□□ -1.84
VMP1-208ENST00000588617 JPT1Q9UK76 154 aa3.55□□□□□ -1.84
VMP1-208ENST00000588617 UBR3Q6ZT12 1888 aa3.55□□□□□ -1.84
VMP1-208ENST00000588617 COL1A1P02452 1464 aaPredicted RBP3.54□□□□□ -1.84
VMP1-208ENST00000588617 LRRC37AA6NMS7 1700 aa3.54□□□□□ -1.84
VMP1-208ENST00000588617 TIAM2Q8IVF5 1701 aa3.54□□□□□ -1.84
VMP1-208ENST00000588617 SMCO1Q147U7 214 aa3.54□□□□□ -1.84
VMP1-208ENST00000588617 TMEM229BQ8NBD8 167 aa3.54□□□□□ -1.84
VMP1-208ENST00000588617 TMEM106BQ9NUM4 274 aa3.54□□□□□ -1.84
VMP1-208ENST00000588617 DOCK2Q92608 1830 aa3.54□□□□□ -1.84
VMP1-208ENST00000588617 C10orf71Q711Q0 1435 aa3.53□□□□□ -1.84
VMP1-208ENST00000588617 TNS1Q9HBL0 1735 aaKnown RBP3.53□□□□□ -1.84
VMP1-208ENST00000588617 TNRC6CQ9HCJ0 1690 aaKnown RBP3.53□□□□□ -1.84
VMP1-208ENST00000588617 TRAV36DV7A0A075B6V5 113 aa3.53□□□□□ -1.84
VMP1-208ENST00000588617 A0A087WX48 190 aa3.53□□□□□ -1.84
VMP1-208ENST00000588617 GTF2A1P52655 376 aaPredicted RBP3.53□□□□□ -1.84
VMP1-208ENST00000588617 S100A12P80511 92 aa3.53□□□□□ -1.84
VMP1-208ENST00000588617 KLRD1Q13241 179 aa3.53□□□□□ -1.84
VMP1-208ENST00000588617 LINC00311Q8N616 119 aa3.53□□□□□ -1.84
VMP1-208ENST00000588617 LY96Q9Y6Y9 160 aa3.53□□□□□ -1.84
VMP1-208ENST00000588617 QSER1Q2KHR3 1735 aa3.53□□□□□ -1.85
VMP1-208ENST00000588617 ZFHX2Q9C0A1 2572 aaPredicted RBP3.53□□□□□ -1.85
VMP1-208ENST00000588617 COL4A1P02462 1669 aa3.52□□□□□ -1.85
VMP1-208ENST00000588617 KRTAP10-1P60331 282 aa3.52□□□□□ -1.85
VMP1-208ENST00000588617 CCDC153Q494R4 210 aa3.52□□□□□ -1.85
VMP1-208ENST00000588617 OR2T35Q8NGX2 323 aa3.52□□□□□ -1.85
VMP1-208ENST00000588617 CHCHD1Q96BP2 118 aaKnown RBP3.52□□□□□ -1.85
VMP1-208ENST00000588617 LXNQ9BS40 222 aa3.52□□□□□ -1.85
VMP1-208ENST00000588617 SPANXCQ9NY87 97 aa3.52□□□□□ -1.85
VMP1-208ENST00000588617 A0A1B0GUL6 1792 aa3.52□□□□□ -1.85
VMP1-208ENST00000588617 AKAP11Q9UKA4 1901 aa3.52□□□□□ -1.85
VMP1-208ENST00000588617 PLIN4Q96Q06 1357 aa3.51□□□□□ -1.85
VMP1-208ENST00000588617 KIAA1551Q9HCM1 1747 aa3.51□□□□□ -1.85
VMP1-208ENST00000588617 IGHV1-58A0A0C4DH39 117 aa3.51□□□□□ -1.85
VMP1-208ENST00000588617 A0A1B0GX51 115 aa3.51□□□□□ -1.85
VMP1-208ENST00000588617 OR1I1O60431 355 aa3.51□□□□□ -1.85
VMP1-208ENST00000588617 MT-ND6P03923 174 aa3.51□□□□□ -1.85
VMP1-208ENST00000588617 SMIM5Q71RC9 77 aa3.51□□□□□ -1.85
VMP1-208ENST00000588617 PLXNA3P51805 1871 aa3.51□□□□□ -1.85
VMP1-208ENST00000588617 NUP210Q8TEM1 1887 aaPredicted RBP3.51□□□□□ -1.85
VMP1-208ENST00000588617 LAMA4Q16363 1823 aa3.5□□□□□ -1.85
VMP1-208ENST00000588617 DEFB113Q30KQ7 82 aa3.5□□□□□ -1.85
Retrieved 100 of 20,778 RNA–protein pairs in 28.1 ms