RNA–Protein interactions for RNA: ENST00000437564.5

MCF2-205, Transcript of MCF.2 cell line derived transforming sequence, humanhuman

APPRIS ALT2 TSL 1 (best)

Gene MCF2, Length 1,988 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MCF2-205ENST00000437564 NABP2Q9BQ15 211 aa5.04□□□□□ -1.6
MCF2-205ENST00000437564 TM2D3Q9BRN9 247 aa5.04□□□□□ -1.6
MCF2-205ENST00000437564 RBM12B-AS1Q9P1G2 102 aa5.04□□□□□ -1.6
MCF2-205ENST00000437564 ZNF492Q9P255 531 aa5.04□□□□□ -1.6
MCF2-205ENST00000437564 DKK2Q9UBU2 259 aa5.04□□□□□ -1.6
MCF2-205ENST00000437564 RALGAPA1Q6GYQ0 2036 aa5.04□□□□□ -1.6
MCF2-205ENST00000437564 LINC01546A6NGU7 62 aa5.04□□□□□ -1.6
MCF2-205ENST00000437564 NDUFB3O43676 98 aa5.04□□□□□ -1.6
MCF2-205ENST00000437564 GRPP07492 148 aa5.04□□□□□ -1.6
MCF2-205ENST00000437564 SNRPD3P62318 126 aaKnown RBP5.04□□□□□ -1.6
MCF2-205ENST00000437564 KRTAP27-1Q3LI81 207 aa5.04□□□□□ -1.6
MCF2-205ENST00000437564 Q8N7P7 452 aa5.04□□□□□ -1.6
MCF2-205ENST00000437564 LY6G5BQ8NDX9 201 aa5.04□□□□□ -1.6
MCF2-205ENST00000437564 RPP21Q9H633 154 aaKnown RBP5.04□□□□□ -1.6
MCF2-205ENST00000437564 TAC3Q9UHF0 121 aa5.04□□□□□ -1.6
MCF2-205ENST00000437564 K7EMI3 77 aa5.03□□□□□ -1.6
MCF2-205ENST00000437564 LGALS3P17931 250 aaKnown RBP5.03□□□□□ -1.6
MCF2-205ENST00000437564 PAX8Q06710 450 aa5.03□□□□□ -1.6
MCF2-205ENST00000437564 RIGQ13278 110 aa5.03□□□□□ -1.6
MCF2-205ENST00000437564 C9orf57Q5W0N0 161 aa5.03□□□□□ -1.6
MCF2-205ENST00000437564 MAPKAPK5-AS1Q8N8E1 139 aa5.03□□□□□ -1.6
MCF2-205ENST00000437564 ATG2BQ96BY7 2078 aa5.03□□□□□ -1.6
MCF2-205ENST00000437564 TNS1Q9HBL0 1735 aaKnown RBP5.02□□□□□ -1.61
MCF2-205ENST00000437564 TRBV7-1A0A0A6YYK4 115 aa5.02□□□□□ -1.61
MCF2-205ENST00000437564 C17orf100A8MU93 164 aa5.02□□□□□ -1.61
MCF2-205ENST00000437564 K7EMT4 169 aa5.02□□□□□ -1.61
MCF2-205ENST00000437564 BCE1O60756 84 aa5.02□□□□□ -1.61
MCF2-205ENST00000437564 IFI27P40305 119 aaPredicted RBP5.02□□□□□ -1.61
MCF2-205ENST00000437564 ZNF818PQ6ZRF7 136 aa5.02□□□□□ -1.61
MCF2-205ENST00000437564 CD177Q8N6Q3 437 aa5.02□□□□□ -1.61
MCF2-205ENST00000437564 Q8N8P6 123 aa5.02□□□□□ -1.61
MCF2-205ENST00000437564 DEPPQ9NTK1 212 aa5.02□□□□□ -1.61
MCF2-205ENST00000437564 U3KQK5 164 aa5.02□□□□□ -1.61
MCF2-205ENST00000437564 KIAA1549LQ6ZVL6 1849 aa5.02□□□□□ -1.61
MCF2-205ENST00000437564 EML5Q05BV3 1969 aa5.02□□□□□ -1.61
MCF2-205ENST00000437564 GOLGA4Q13439 2230 aaKnown RBP5.02□□□□□ -1.61
MCF2-205ENST00000437564 IGKV6D-21A0A0A0MT36 114 aa5.02□□□□□ -1.61
MCF2-205ENST00000437564 IGKV6-21A0A0C4DH24 114 aa5.02□□□□□ -1.61
MCF2-205ENST00000437564 A0A0G2JRQ6 117 aa5.02□□□□□ -1.61
MCF2-205ENST00000437564 CCL21O00585 134 aa5.02□□□□□ -1.61
MCF2-205ENST00000437564 SPRY3O43610 288 aa5.02□□□□□ -1.61
MCF2-205ENST00000437564 TIMM17BO60830 172 aa5.02□□□□□ -1.61
MCF2-205ENST00000437564 FHL2Q14192 279 aa5.02□□□□□ -1.61
MCF2-205ENST00000437564 KISS1Q15726 138 aa5.02□□□□□ -1.61
MCF2-205ENST00000437564 KTN1-AS1Q86SY8 53 aa5.02□□□□□ -1.61
MCF2-205ENST00000437564 EEF1AKMT3Q96AZ1 226 aa5.02□□□□□ -1.61
MCF2-205ENST00000437564 KRTAP4-12Q9BQ66 201 aa5.02□□□□□ -1.61
MCF2-205ENST00000437564 PHF3Q92576 2039 aaKnown RBP5.02□□□□□ -1.61
MCF2-205ENST00000437564 DYSFO75923 2080 aa5.01□□□□□ -1.61
MCF2-205ENST00000437564 NDUFC1O43677 76 aa5.01□□□□□ -1.61
MCF2-205ENST00000437564 RNASE2P10153 161 aaKnown RBP5.01□□□□□ -1.61
MCF2-205ENST00000437564 ZNF22P17026 224 aaPredicted RBP5.01□□□□□ -1.61
MCF2-205ENST00000437564 EDDM3BP56851 147 aa5.01□□□□□ -1.61
MCF2-205ENST00000437564 HIST2H2BCQ6DN03 193 aa5.01□□□□□ -1.61
MCF2-205ENST00000437564 HIST2H2BDQ6DRA6 164 aa5.01□□□□□ -1.61
MCF2-205ENST00000437564 Q6ZRM9 215 aa5.01□□□□□ -1.61
MCF2-205ENST00000437564 VSIG2Q96IQ7 327 aa5.01□□□□□ -1.61
MCF2-205ENST00000437564 SLC50A1Q9BRV3 221 aa5.01□□□□□ -1.61
MCF2-205ENST00000437564 TTTY13Q9BZ97 58 aa5.01□□□□□ -1.61
MCF2-205ENST00000437564 MOB4Q9Y3A3 225 aa5.01□□□□□ -1.61
MCF2-205ENST00000437564 IGLV1-36A0A0B4J1U3 117 aa5□□□□□ -1.61
MCF2-205ENST00000437564 TRBV30A0A0K0K1B3 111 aa5□□□□□ -1.61
MCF2-205ENST00000437564 SPRY2O43597 315 aa5□□□□□ -1.61
MCF2-205ENST00000437564 NDUFS5O43920 106 aa5□□□□□ -1.61
MCF2-205ENST00000437564 PRSS1P07477 247 aa5□□□□□ -1.61
MCF2-205ENST00000437564 CFC1BP0CG36 223 aa5□□□□□ -1.61
MCF2-205ENST00000437564 CFC1P0CG37 223 aa5□□□□□ -1.61
MCF2-205ENST00000437564 RPS27P42677 84 aaKnown RBP5□□□□□ -1.61
MCF2-205ENST00000437564 CRIP2P52943 208 aaPredicted RBP5□□□□□ -1.61
MCF2-205ENST00000437564 SUB1P53999 127 aaKnown RBP eCLIP5□□□□□ -1.61
MCF2-205ENST00000437564 MIC13Q5XKP0 118 aa5□□□□□ -1.61
MCF2-205ENST00000437564 PVRIGQ6DKI7 326 aa5□□□□□ -1.61
MCF2-205ENST00000437564 WDR86Q86TI4 376 aa5□□□□□ -1.61
MCF2-205ENST00000437564 DAND5Q8N907 189 aa5□□□□□ -1.61
MCF2-205ENST00000437564 NUP37Q8NFH4 326 aa5□□□□□ -1.61
MCF2-205ENST00000437564 SMCHD1A6NHR9 2005 aa5□□□□□ -1.61
MCF2-205ENST00000437564 KRTAP4-8A0A0G2JLE6 195 aa5□□□□□ -1.61
MCF2-205ENST00000437564 LYRM9A8MSI8 78 aa5□□□□□ -1.61
MCF2-205ENST00000437564 CCKP06307 115 aa5□□□□□ -1.61
MCF2-205ENST00000437564 MSMPQ1L6U9 139 aa5□□□□□ -1.61
MCF2-205ENST00000437564 FHL5Q5TD97 284 aa5□□□□□ -1.61
MCF2-205ENST00000437564 LINC00596Q86U02 117 aa5□□□□□ -1.61
MCF2-205ENST00000437564 PRR26Q8N8Z3 221 aa5□□□□□ -1.61
MCF2-205ENST00000437564 DEFB127Q9H1M4 99 aa5□□□□□ -1.61
MCF2-205ENST00000437564 C7orf69Q9H7B7 122 aa5□□□□□ -1.61
MCF2-205ENST00000437564 AGRNO00468 2067 aa4.99□□□□□ -1.61
MCF2-205ENST00000437564 A0A1B0GUT8 65 aa4.99□□□□□ -1.61
MCF2-205ENST00000437564 SRRM4A7MD48 611 aaKnown RBP4.99□□□□□ -1.61
MCF2-205ENST00000437564 KRTAP9-9Q9BYP9 154 aa4.99□□□□□ -1.61
MCF2-205ENST00000437564 KRTAP9-4Q9BYQ2 154 aa4.99□□□□□ -1.61
MCF2-205ENST00000437564 LSM4Q9Y4Z0 139 aaKnown RBP4.99□□□□□ -1.61
MCF2-205ENST00000437564 RAI1Q7Z5J4 1906 aaPredicted RBP4.99□□□□□ -1.61
MCF2-205ENST00000437564 TRAV16A0A0A6YYK6 109 aaPredicted RBP4.98□□□□□ -1.61
MCF2-205ENST00000437564 A0A1W2PQD3 144 aa4.98□□□□□ -1.61
MCF2-205ENST00000437564 RBMY1BA6NDE4 496 aaKnown RBP4.98□□□□□ -1.61
MCF2-205ENST00000437564 RBMY1EA6NEQ0 496 aaKnown RBP4.98□□□□□ -1.61
MCF2-205ENST00000437564 IQCF6A8MYZ5 107 aa4.98□□□□□ -1.61
MCF2-205ENST00000437564 SMKR1H3BMG3 65 aa4.98□□□□□ -1.61
MCF2-205ENST00000437564 H7C423 109 aa4.98□□□□□ -1.61
MCF2-205ENST00000437564 WISP2O76076 250 aa4.98□□□□□ -1.61
Retrieved 100 of 20,778 RNA–protein pairs in 62.1 ms