RNA–Protein interactions for RNA: YMR171C

EAR1, Transcript of Specificity factor required for Rsp5p-dependent ubiquitination, yeast

Gene EAR1, Length 1,653 nt, Biotype protein coding, Subcellular localisation Cellular bud, Cytoplasm .

RNA		Protein				Prediction (catRAPID)		Interaction (RIP-Chip)
Gene	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	Detected Interaction
EAR1	YMR171C	IRC8	P47046	822 aa		4.99	□□□□□ -1.61
EAR1	YMR171C	AVT1	P47082	602 aa		4.99	□□□□□ -1.61
EAR1	YMR171C	MRS2	Q01926	470 aa		4.99	□□□□□ -1.61
EAR1	YMR171C	RBA50	Q04418	439 aa		4.99	□□□□□ -1.61
EAR1	YMR171C	DCS2	Q12123	353 aa		4.99	□□□□□ -1.61
EAR1	YMR171C	NBL1	Q3E7Y6	73 aa		4.99	□□□□□ -1.61
EAR1	YMR171C	PRE10	P21242	288 aa	Known RBP RIP-Chip data	4.98	□□□□□ -1.61	not detected
EAR1	YMR171C	STE11	P23561	717 aa		4.98	□□□□□ -1.61
EAR1	YMR171C	MCM4	P30665	933 aa	Known RBP	4.98	□□□□□ -1.61
EAR1	YMR171C	YEL043W	P32618	956 aa		4.98	□□□□□ -1.61
EAR1	YMR171C	BMH2	P34730	273 aa	Known RBP	4.98	□□□□□ -1.61
EAR1	YMR171C	PSY4	P38193	441 aa		4.98	□□□□□ -1.61
EAR1	YMR171C	MIP6	P38760	659 aa	Known RBP	4.98	□□□□□ -1.61
EAR1	YMR171C	NDC80	P40460	691 aa		4.98	□□□□□ -1.61
EAR1	YMR171C	ALF1	P53904	254 aa		4.98	□□□□□ -1.61
EAR1	YMR171C	ECM9	Q02202	377 aa		4.98	□□□□□ -1.61
EAR1	YMR171C	TMA10	Q06177	86 aa		4.98	□□□□□ -1.61
EAR1	YMR171C	APL4	Q12028	832 aa		4.98	□□□□□ -1.61
EAR1	YMR171C	PHO13	P19881	312 aa		4.97	□□□□□ -1.61
EAR1	YMR171C	UBC1	P21734	215 aa	Known RBP	4.97	□□□□□ -1.61
EAR1	YMR171C	KAR4	P25583	335 aa		4.97	□□□□□ -1.61
EAR1	YMR171C	DPB3	P27344	201 aa		4.97	□□□□□ -1.61
EAR1	YMR171C	THI80	P35202	319 aa		4.97	□□□□□ -1.61
EAR1	YMR171C	YBR071W	P38243	211 aa		4.97	□□□□□ -1.61
EAR1	YMR171C	MNN11	P46985	422 aa	Known RBP	4.97	□□□□□ -1.61
EAR1	YMR171C	CUE3	P53137	624 aa	Known RBP	4.97	□□□□□ -1.61
EAR1	YMR171C	MAL13	P53338	473 aa		4.97	□□□□□ -1.61
EAR1	YMR171C	VPS38	Q05919	439 aa		4.97	□□□□□ -1.61
EAR1	YMR171C	CTI6	Q08923	506 aa		4.97	□□□□□ -1.61
EAR1	YMR171C	RRP43	P25359	394 aa	Predicted RBP	4.96	□□□□□ -1.61
EAR1	YMR171C	BMH1	P29311	267 aa	Known RBP	4.96	□□□□□ -1.61
EAR1	YMR171C	PCH2	P38126	564 aa		4.96	□□□□□ -1.61
EAR1	YMR171C	FYV8	P46949	817 aa	Known RBP	4.96	□□□□□ -1.61
EAR1	YMR171C	EXG2	P52911	562 aa		4.96	□□□□□ -1.61
EAR1	YMR171C	BRE5	P53741	515 aa	Known RBP	4.96	□□□□□ -1.61
EAR1	YMR171C	COG6	P53959	839 aa		4.96	□□□□□ -1.61
EAR1	YMR171C	LEE1	Q02799	301 aa	Known RBP	4.96	□□□□□ -1.61
EAR1	YMR171C	TLG2	Q08144	397 aa		4.96	□□□□□ -1.61
EAR1	YMR171C	TMA16	Q08687	178 aa		4.96	□□□□□ -1.61
EAR1	YMR171C	TRE2	Q08693	809 aa		4.96	□□□□□ -1.61
EAR1	YMR171C	GET3	Q12154	354 aa	Known RBP	4.96	□□□□□ -1.61
EAR1	YMR171C	YKL068W-A	Q3E826	78 aa		4.96	□□□□□ -1.61
EAR1	YMR171C	YLR415C	O13578	112 aa		4.96	□□□□□ -1.62
EAR1	YMR171C	SWI4	P25302	1093 aa	Known RBP	4.96	□□□□□ -1.62
EAR1	YMR171C	SSZ1	P38788	538 aa	Known RBP	4.96	□□□□□ -1.62
EAR1	YMR171C	RTT107	P38850	1070 aa		4.96	□□□□□ -1.62
EAR1	YMR171C	RIX1	P38883	763 aa	Predicted RBP	4.96	□□□□□ -1.62
EAR1	YMR171C	SPT8	P38915	602 aa		4.96	□□□□□ -1.62
EAR1	YMR171C	VPS41	P38959	992 aa		4.96	□□□□□ -1.62
EAR1	YMR171C	HXT6	P39003	570 aa	Known RBP	4.96	□□□□□ -1.62
EAR1	YMR171C	HXT7	P39004	570 aa		4.96	□□□□□ -1.62
EAR1	YMR171C	CCT4	P39078	528 aa	Known RBP	4.96	□□□□□ -1.62
EAR1	YMR171C	YJR039W	P47107	1121 aa		4.96	□□□□□ -1.62
EAR1	YMR171C	ORC4	P54791	529 aa		4.96	□□□□□ -1.62
EAR1	YMR171C	RRB1	Q04225	511 aa	Known RBP	4.96	□□□□□ -1.62
EAR1	YMR171C	CDC37	P06101	506 aa	Known RBP	4.95	□□□□□ -1.62
EAR1	YMR171C	MCM3	P24279	971 aa	Known RBP	4.95	□□□□□ -1.62
EAR1	YMR171C	CAD1	P24813	409 aa	Known RBP	4.95	□□□□□ -1.62
EAR1	YMR171C	NGG1	P32494	702 aa		4.95	□□□□□ -1.62
EAR1	YMR171C	MAL31	P38156	614 aa		4.95	□□□□□ -1.62
EAR1	YMR171C	EFM2	P38347	419 aa		4.95	□□□□□ -1.62
EAR1	YMR171C	DUG1	P43616	481 aa	Known RBP	4.95	□□□□□ -1.62
EAR1	YMR171C	CAF130	P53280	1122 aa	Predicted RBP	4.95	□□□□□ -1.62
EAR1	YMR171C	SML1	Q04964	104 aa		4.95	□□□□□ -1.62
EAR1	YMR171C	OMS1	Q06668	471 aa		4.95	□□□□□ -1.62
EAR1	YMR171C	AFT2	Q08957	416 aa		4.95	□□□□□ -1.62
EAR1	YMR171C	CEX1	Q12453	761 aa		4.95	□□□□□ -1.62
EAR1	YMR171C	TRM11	Q12463	433 aa		4.95	□□□□□ -1.62
EAR1	YMR171C	RPS21B	Q3E754	87 aa	Known RBP	4.95	□□□□□ -1.62
EAR1	YMR171C	YLR358C	O13565	187 aa		4.94	□□□□□ -1.62
EAR1	YMR171C	CYB2	P00175	591 aa		4.94	□□□□□ -1.62
EAR1	YMR171C	RPO26	P20435	155 aa		4.94	□□□□□ -1.62
EAR1	YMR171C	DAL3	P32459	195 aa		4.94	□□□□□ -1.62
EAR1	YMR171C	SIC1	P38634	284 aa		4.94	□□□□□ -1.62
EAR1	YMR171C	RPP1	P38786	293 aa		4.94	□□□□□ -1.62
EAR1	YMR171C	NUG1	P40010	520 aa	Known RBP	4.94	□□□□□ -1.62
EAR1	YMR171C	SEC9	P40357	651 aa		4.94	□□□□□ -1.62
EAR1	YMR171C	RTC4	P53850	401 aa		4.94	□□□□□ -1.62
EAR1	YMR171C	TFC6	Q06339	672 aa		4.94	□□□□□ -1.62
EAR1	YMR171C	ATG23	Q06671	453 aa		4.94	□□□□□ -1.62
EAR1	YMR171C	ATG9	Q12142	997 aa		4.94	□□□□□ -1.62
EAR1	YMR171C	RUD3	Q12234	484 aa	Known RBP	4.94	□□□□□ -1.62
EAR1	YMR171C	LAS17	Q12446	633 aa		4.94	□□□□□ -1.62
EAR1	YMR171C	HIS4	P00815	799 aa	Known RBP	4.93	□□□□□ -1.62
EAR1	YMR171C	RPS21A	P0C0V8	87 aa	Known RBP	4.93	□□□□□ -1.62
EAR1	YMR171C	COQ1	P18900	473 aa		4.93	□□□□□ -1.62
EAR1	YMR171C	MSH1	P25846	959 aa		4.93	□□□□□ -1.62
EAR1	YMR171C	SEC65	P29478	273 aa		4.93	□□□□□ -1.62
EAR1	YMR171C	NFU1	P32860	256 aa		4.93	□□□□□ -1.62
EAR1	YMR171C	CTF13	P35203	478 aa		4.93	□□□□□ -1.62
EAR1	YMR171C	BYE1	P36106	594 aa		4.93	□□□□□ -1.62
EAR1	YMR171C	RXT2	P38255	430 aa		4.93	□□□□□ -1.62
EAR1	YMR171C	CTM1	P38818	585 aa		4.93	□□□□□ -1.62
EAR1	YMR171C	GPP2	P40106	250 aa	Known RBP	4.93	□□□□□ -1.62
EAR1	YMR171C	NRD1	P53617	575 aa	Known RBP RIP-Chip data	4.93	□□□□□ -1.62	not detected
EAR1	YMR171C	RPS15	Q01855	142 aa	Known RBP	4.93	□□□□□ -1.62
EAR1	YMR171C	YLR287C	Q05881	355 aa		4.93	□□□□□ -1.62
EAR1	YMR171C	MMR1	Q06324	491 aa		4.93	□□□□□ -1.62
EAR1	YMR171C	TIP41	Q12199	356 aa		4.93	□□□□□ -1.62
EAR1	YMR171C	FIG2	P25653	1609 aa		4.93	□□□□□ -1.62

Retrieved 100 of 5,963 RNA–protein pairs in 51 ms