RNA–Protein interactions for RNA: YDR235W

PRP42, Transcript of U1 snRNP protein involved in splicing, yeastyeast

Gene PRP42, Length 1,635 nt, Biotype protein coding.

Download Table  
RNA Protein Prediction (catRAPID) Interaction (RIP-Chip)
Gene Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score Detected Interaction
PRP42YDR235W WAR1Q03631 944 aa1.48□□□□□ -2.17
PRP42YDR235W VBA4Q04602 768 aaKnown RBP1.48□□□□□ -2.17
PRP42YDR235W VHS3Q08438 674 aa1.48□□□□□ -2.17
PRP42YDR235W FRS1P15624 595 aaKnown RBP1.48□□□□□ -2.17
PRP42YDR235W SSD1P24276 1250 aaKnown RBP RIP-Chip data1.48□□□□□ -2.17not detected
PRP42YDR235W PPZ1P26570 692 aa1.48□□□□□ -2.17
PRP42YDR235W NHX1Q04121 633 aa1.48□□□□□ -2.17
PRP42YDR235W MLH2Q07980 695 aa1.48□□□□□ -2.17
PRP42YDR235W TGS1Q12052 315 aa1.48□□□□□ -2.17
PRP42YDR235W CIT2P08679 460 aa1.47□□□□□ -2.17
PRP42YDR235W HOG1P32485 435 aa1.47□□□□□ -2.17
PRP42YDR235W PET127P32606 800 aa1.47□□□□□ -2.17
PRP42YDR235W SCO2P38072 301 aa1.47□□□□□ -2.17
PRP42YDR235W YHR202WP38887 602 aa1.47□□□□□ -2.17
PRP42YDR235W YJL049WP47048 450 aa1.47□□□□□ -2.17
PRP42YDR235W HRD3Q05787 833 aa1.47□□□□□ -2.17
PRP42YDR235W RSA1Q08932 381 aa1.47□□□□□ -2.17
PRP42YDR235W SAN1P22470 610 aa1.46□□□□□ -2.18
PRP42YDR235W LOT5P34234 306 aa1.46□□□□□ -2.18
PRP42YDR235W MNN4P36044 1178 aa1.46□□□□□ -2.18
PRP42YDR235W BRN1P38170 754 aa1.46□□□□□ -2.18
PRP42YDR235W SSZ1P38788 538 aaKnown RBP1.46□□□□□ -2.18
PRP42YDR235W ERR1P0CX10 437 aa1.45□□□□□ -2.18
PRP42YDR235W ERR2P0CX11 437 aa1.45□□□□□ -2.18
PRP42YDR235W PRP22P24384 1145 aaKnown RBP1.45□□□□□ -2.18
PRP42YDR235W MEF1P25039 761 aa1.45□□□□□ -2.18
PRP42YDR235W PCA1P38360 1216 aa1.45□□□□□ -2.18
PRP42YDR235W YJR039WP47107 1121 aa1.45□□□□□ -2.18
PRP42YDR235W SAP4P53036 818 aa1.45□□□□□ -2.18
PRP42YDR235W GPD1Q00055 391 aaKnown RBP1.45□□□□□ -2.18
PRP42YDR235W RPS15Q01855 142 aaKnown RBP1.45□□□□□ -2.18
PRP42YDR235W TAF7Q05021 590 aa1.45□□□□□ -2.18
PRP42YDR235W MDM12Q92328 271 aa1.45□□□□□ -2.18
PRP42YDR235W REV1P12689 985 aa1.44□□□□□ -2.18
PRP42YDR235W YJU2P28320 278 aaPredicted RBP1.44□□□□□ -2.18
PRP42YDR235W NUG1P40010 520 aaKnown RBP1.44□□□□□ -2.18
PRP42YDR235W YGR054WP53235 642 aaKnown RBP1.44□□□□□ -2.18
PRP42YDR235W IMP4P53941 290 aaKnown RBP1.44□□□□□ -2.18
PRP42YDR235W ADD37Q03233 198 aa1.44□□□□□ -2.18
PRP42YDR235W RCR2Q03446 210 aaKnown RBP1.44□□□□□ -2.18
PRP42YDR235W DCS2Q12123 353 aa1.44□□□□□ -2.18
PRP42YDR235W SRD1P09007 221 aa1.44□□□□□ -2.18
PRP42YDR235W HMG1P12683 1054 aa1.44□□□□□ -2.18
PRP42YDR235W GSY1P23337 708 aa1.44□□□□□ -2.18
PRP42YDR235W IMG2P25642 146 aaPredicted RBP1.44□□□□□ -2.18
PRP42YDR235W YPT10P38146 199 aa1.44□□□□□ -2.18
PRP42YDR235W TOM71P38825 639 aaKnown RBP1.44□□□□□ -2.18
PRP42YDR235W DSS1P39112 969 aa1.44□□□□□ -2.18
PRP42YDR235W DOT6P40059 670 aaKnown RBP1.44□□□□□ -2.18
PRP42YDR235W FDC1Q03034 503 aa1.44□□□□□ -2.18
PRP42YDR235W BSC6Q08280 497 aa1.44□□□□□ -2.18
PRP42YDR235W PCL8Q08966 492 aa1.44□□□□□ -2.18
PRP42YDR235W GAL4P04386 881 aa1.43□□□□□ -2.18
PRP42YDR235W TIF3P34167 436 aaKnown RBP1.43□□□□□ -2.18
PRP42YDR235W DHR2P36009 735 aaPredicted RBP1.43□□□□□ -2.18
PRP42YDR235W BEM4P39011 633 aa1.43□□□□□ -2.18
PRP42YDR235W ROK1P45818 564 aaPredicted RBP1.43□□□□□ -2.18
PRP42YDR235W AIM14P53109 570 aa1.43□□□□□ -2.18
PRP42YDR235W APJ1P53940 528 aa1.43□□□□□ -2.18
PRP42YDR235W SNU56Q03782 492 aaKnown RBP1.43□□□□□ -2.18
PRP42YDR235W ATG33Q06485 197 aa1.43□□□□□ -2.18
PRP42YDR235W CDC53Q12018 815 aaKnown RBP1.43□□□□□ -2.18
PRP42YDR235W TIP41Q12199 356 aa1.43□□□□□ -2.18
PRP42YDR235W AHA1Q12449 350 aaKnown RBP1.43□□□□□ -2.18
PRP42YDR235W CET1O13297 549 aaPredicted RBP1.42□□□□□ -2.18
PRP42YDR235W YFL068WP0CX99 160 aa1.42□□□□□ -2.18
PRP42YDR235W YLL066W-AP0CY00 160 aa1.42□□□□□ -2.18
PRP42YDR235W YLL067W-AP0CY01 160 aa1.42□□□□□ -2.18
PRP42YDR235W IME1P21190 360 aa1.42□□□□□ -2.18
PRP42YDR235W MNN1P39106 762 aa1.42□□□□□ -2.18
PRP42YDR235W VTC3Q02725 835 aa1.42□□□□□ -2.18
PRP42YDR235W NSE3Q05541 303 aa1.42□□□□□ -2.18
PRP42YDR235W PNO1Q99216 274 aaKnown RBP1.42□□□□□ -2.18
PRP42YDR235W YKU70P32807 602 aa1.41□□□□□ -2.18
PRP42YDR235W CCL1P37366 393 aa1.41□□□□□ -2.18
PRP42YDR235W IMD2P38697 523 aaKnown RBP1.41□□□□□ -2.18
PRP42YDR235W BUD8P41698 603 aa1.41□□□□□ -2.18
PRP42YDR235W PXA1P41909 870 aa1.41□□□□□ -2.18
PRP42YDR235W IMD3P50095 523 aaKnown RBP1.41□□□□□ -2.18
PRP42YDR235W SHE10P53075 577 aa1.41□□□□□ -2.18
PRP42YDR235W TIM50Q02776 476 aa1.41□□□□□ -2.18
PRP42YDR235W DIG1Q03063 452 aaKnown RBP1.41□□□□□ -2.18
PRP42YDR235W CYK3Q07533 885 aa1.41□□□□□ -2.18
PRP42YDR235W STI1P15705 589 aaKnown RBP RIP-Chip data1.4□□□□□ -2.18not detected
PRP42YDR235W HOP1P20050 605 aa1.4□□□□□ -2.18
PRP42YDR235W PCL2P25693 308 aa1.4□□□□□ -2.18
PRP42YDR235W CAP1P28495 268 aaKnown RBP1.4□□□□□ -2.18
PRP42YDR235W TIM23P32897 222 aa1.4□□□□□ -2.18
PRP42YDR235W PCM1P38628 557 aaKnown RBP1.4□□□□□ -2.18
PRP42YDR235W CHZ1P40019 153 aaPredicted RBP1.4□□□□□ -2.18
PRP42YDR235W BET4Q00618 327 aa1.4□□□□□ -2.18
PRP42YDR235W COG8Q04632 607 aa1.4□□□□□ -2.18
PRP42YDR235W YPS7Q06325 596 aa1.4□□□□□ -2.18
PRP42YDR235W STP4Q07351 490 aa1.4□□□□□ -2.18
PRP42YDR235W ILS1P09436 1072 aaKnown RBP1.4□□□□□ -2.19
PRP42YDR235W MAK32P23060 363 aa1.4□□□□□ -2.19
PRP42YDR235W YKR075CP36155 307 aa1.4□□□□□ -2.19
PRP42YDR235W RKM3P38222 552 aa1.4□□□□□ -2.19
PRP42YDR235W FTH1P38310 465 aa1.4□□□□□ -2.19
PRP42YDR235W CRG1P38892 291 aaRIP-Chip data1.4□□□□□ -2.19not detected
Retrieved 100 of 5,963 RNA–protein pairs in 29.2 ms