RNA–Protein interactions for RNA: ENST00000455727.6

LDLR-202, Transcript of low density lipoprotein receptor, humanhuman

TSL 2 BASIC

Gene LDLR, Length 2,333 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LDLR-202ENST00000455727 AKNAD1Q5T1N1 836 aa17.55■□□□□ 0.4
LDLR-202ENST00000455727 MYSM1Q5VVJ2 828 aa17.55■□□□□ 0.4
LDLR-202ENST00000455727 OTUD7BQ6GQQ9 843 aa17.55■□□□□ 0.4
LDLR-202ENST00000455727 ZBTB43O43298 467 aa17.55■□□□□ 0.4
LDLR-202ENST00000455727 KIF23Q02241 960 aaPredicted RBP17.55■□□□□ 0.4
LDLR-202ENST00000455727 FSIP1Q8NA03 581 aa17.55■□□□□ 0.4
LDLR-202ENST00000455727 PIBF1Q8WXW3 757 aa17.55■□□□□ 0.4
LDLR-202ENST00000455727 MRPS27Q92552 414 aaKnown RBP17.55■□□□□ 0.4
LDLR-202ENST00000455727 ZSWIM5Q9P217 1185 aa17.55■□□□□ 0.4
LDLR-202ENST00000455727 NID2Q14112 1375 aa17.54■□□□□ 0.4
LDLR-202ENST00000455727 UBE4AQ14139 1066 aa17.54■□□□□ 0.4
LDLR-202ENST00000455727 TMEM67Q5HYA8 995 aa17.54■□□□□ 0.4
LDLR-202ENST00000455727 STAG1Q8WVM7 1258 aa17.54■□□□□ 0.4
LDLR-202ENST00000455727 CNTNAP4Q9C0A0 1308 aa17.54■□□□□ 0.4
LDLR-202ENST00000455727 NTRK3Q16288 839 aa17.54■□□□□ 0.4
LDLR-202ENST00000455727 SLC10A5Q5PT55 438 aa17.54■□□□□ 0.4
LDLR-202ENST00000455727 SYNE3Q6ZMZ3 975 aa17.54■□□□□ 0.4
LDLR-202ENST00000455727 MFSD6Q6ZSS7 791 aa17.54■□□□□ 0.4
LDLR-202ENST00000455727 RAB11FIP4Q86YS3 637 aa17.54■□□□□ 0.4
LDLR-202ENST00000455727 ANKRD18AQ8IVF6 992 aa17.54■□□□□ 0.4
LDLR-202ENST00000455727 FMR1NBQ8N0W7 255 aaPredicted RBP17.54■□□□□ 0.4
LDLR-202ENST00000455727 LINC00116Q8NCU8 138 aa17.54■□□□□ 0.4
LDLR-202ENST00000455727 GNL3LQ9NVN8 582 aaKnown RBP17.54■□□□□ 0.4
LDLR-202ENST00000455727 BSDC1Q9NW68 430 aaPredicted RBP17.54■□□□□ 0.4
LDLR-202ENST00000455727 LRP2BPQ9P2M1 347 aa17.54■□□□□ 0.4
LDLR-202ENST00000455727 POLR3DP05423 398 aaPredicted RBP17.53■□□□□ 0.4
LDLR-202ENST00000455727 STK38Q15208 465 aa17.53■□□□□ 0.4
LDLR-202ENST00000455727 STX1AQ16623 288 aa17.53■□□□□ 0.4
LDLR-202ENST00000455727 ALG1Q9BT22 464 aa17.53■□□□□ 0.4
LDLR-202ENST00000455727 DNAJC25Q9H1X3 360 aa17.53■□□□□ 0.4
LDLR-202ENST00000455727 CLIC4Q9Y696 253 aa17.53■□□□□ 0.4
LDLR-202ENST00000455727 SCN7AQ01118 1682 aa17.53■□□□□ 0.4
LDLR-202ENST00000455727 ECM29Q5VYK3 1845 aa17.53■□□□□ 0.4
LDLR-202ENST00000455727 CDC27P30260 824 aa17.53■□□□□ 0.4
LDLR-202ENST00000455727 SF3A1Q15459 793 aaKnown RBP17.53■□□□□ 0.4
LDLR-202ENST00000455727 ERFEQ4G0M1 354 aa17.53■□□□□ 0.4
LDLR-202ENST00000455727 NFXL1Q6ZNB6 911 aa17.53■□□□□ 0.4
LDLR-202ENST00000455727 ARHGAP30Q7Z6I6 1101 aaPredicted RBP17.53■□□□□ 0.4
LDLR-202ENST00000455727 LCORLQ8N3X6 602 aa17.53■□□□□ 0.4
LDLR-202ENST00000455727 TTC12Q9H892 705 aaPredicted RBP17.53■□□□□ 0.4
LDLR-202ENST00000455727 SLC4A4Q9Y6R1 1079 aa17.53■□□□□ 0.4
LDLR-202ENST00000455727 STK36Q9NRP7 1315 aa17.52■□□□□ 0.4
LDLR-202ENST00000455727 COL4A1P02462 1669 aa17.52■□□□□ 0.4
LDLR-202ENST00000455727 SPTLC2O15270 562 aa17.52■□□□□ 0.4
LDLR-202ENST00000455727 CTDSPL2Q05D32 466 aa17.52■□□□□ 0.4
LDLR-202ENST00000455727 SENP2Q9HC62 589 aa17.52■□□□□ 0.4
LDLR-202ENST00000455727 FAM217BQ9NTX9 383 aaPredicted RBP17.52■□□□□ 0.4
LDLR-202ENST00000455727 KIF28PB7ZC32 967 aa17.52■□□□□ 0.39
LDLR-202ENST00000455727 IFIT3O14879 490 aaKnown RBP17.52■□□□□ 0.39
LDLR-202ENST00000455727 IARSP41252 1262 aaKnown RBP17.52■□□□□ 0.39
LDLR-202ENST00000455727 TDO2P48775 406 aa17.52■□□□□ 0.39
LDLR-202ENST00000455727 IQCB1Q15051 598 aa17.52■□□□□ 0.39
LDLR-202ENST00000455727 ANO1Q5XXA6 986 aa17.52■□□□□ 0.39
LDLR-202ENST00000455727 PLA2G4DQ86XP0 818 aa17.52■□□□□ 0.39
LDLR-202ENST00000455727 ZNF830Q96NB3 372 aaPredicted RBP17.52■□□□□ 0.39
LDLR-202ENST00000455727 SLC12A7Q9Y666 1083 aa17.52■□□□□ 0.39
LDLR-202ENST00000455727 TACC3Q9Y6A5 838 aa17.52■□□□□ 0.39
LDLR-202ENST00000455727 PRKAB2O43741 272 aa17.51■□□□□ 0.39
LDLR-202ENST00000455727 TOM1O60784 492 aa17.51■□□□□ 0.39
LDLR-202ENST00000455727 VPS72Q15906 364 aa17.51■□□□□ 0.39
LDLR-202ENST00000455727 RC3H1Q5TC82 1133 aaKnown RBP17.51■□□□□ 0.39
LDLR-202ENST00000455727 MICU3Q86XE3 530 aa17.51■□□□□ 0.39
LDLR-202ENST00000455727 TMTC2Q8N394 836 aa17.51■□□□□ 0.39
LDLR-202ENST00000455727 RNF41Q9H4P4 317 aaPredicted RBP17.51■□□□□ 0.39
LDLR-202ENST00000455727 GJB4Q9NTQ9 266 aa17.51■□□□□ 0.39
LDLR-202ENST00000455727 CCDC69A6NI79 296 aa17.5■□□□□ 0.39
LDLR-202ENST00000455727 GOLGA8AA7E2F4 631 aa17.5■□□□□ 0.39
LDLR-202ENST00000455727 RCAN1P53805 252 aa17.5■□□□□ 0.39
LDLR-202ENST00000455727 INCENPQ9NQS7 918 aa17.5■□□□□ 0.39
LDLR-202ENST00000455727 ANO10Q9NW15 660 aa17.5■□□□□ 0.39
LDLR-202ENST00000455727 TAF1P21675 1872 aa17.5■□□□□ 0.39
LDLR-202ENST00000455727 NOLC1Q14978 699 aaKnown RBP eCLIP17.5■□□□□ 0.399e-6■□□□□ 9.6
LDLR-202ENST00000455727 SART3Q15020 963 aaKnown RBP17.5■□□□□ 0.39
LDLR-202ENST00000455727 SLC39A14Q15043 492 aa17.5■□□□□ 0.39
LDLR-202ENST00000455727 FAM98CQ17RN3 349 aaKnown RBP17.5■□□□□ 0.39
LDLR-202ENST00000455727 KRT40Q6A162 431 aa17.5■□□□□ 0.39
LDLR-202ENST00000455727 MPNDQ8N594 471 aa17.5■□□□□ 0.39
LDLR-202ENST00000455727 SPTLC3Q9NUV7 552 aa17.5■□□□□ 0.39
LDLR-202ENST00000455727 ANAPC4Q9UJX5 808 aa17.5■□□□□ 0.39
LDLR-202ENST00000455727 IFNAR1P17181 557 aa17.49■□□□□ 0.39
LDLR-202ENST00000455727 CYP7A1P22680 504 aa17.49■□□□□ 0.39
LDLR-202ENST00000455727 U2AF2P26368 475 aaKnown RBP eCLIP17.49■□□□□ 0.393e-6■■■□□ 15.4
LDLR-202ENST00000455727 ZNF75DP51815 510 aa17.49■□□□□ 0.39
LDLR-202ENST00000455727 CAVIN4Q5BKX8 364 aa17.49■□□□□ 0.39
LDLR-202ENST00000455727 SARM1Q6SZW1 724 aa17.49■□□□□ 0.39
LDLR-202ENST00000455727 WASF1Q92558 559 aa17.49■□□□□ 0.39
LDLR-202ENST00000455727 MINPP1Q9UNW1 487 aa17.49■□□□□ 0.39
LDLR-202ENST00000455727 CACNA1SQ13698 1873 aa17.49■□□□□ 0.39
LDLR-202ENST00000455727 RXRAP19793 462 aa17.49■□□□□ 0.39
LDLR-202ENST00000455727 CMA1P23946 247 aa17.49■□□□□ 0.39
LDLR-202ENST00000455727 NDUFA8P51970 172 aa17.49■□□□□ 0.39
LDLR-202ENST00000455727 C3orf67Q6ZVT6 689 aa17.49■□□□□ 0.39
LDLR-202ENST00000455727 VPS37DQ86XT2 251 aa17.49■□□□□ 0.39
LDLR-202ENST00000455727 PHKBQ93100 1093 aa17.49■□□□□ 0.39
LDLR-202ENST00000455727 NYXQ9GZU5 481 aa17.49■□□□□ 0.39
LDLR-202ENST00000455727 R3HCC1Q9Y3T6 440 aaKnown RBP17.49■□□□□ 0.39
LDLR-202ENST00000455727 A0A1B0GVL5 298 aa17.48■□□□□ 0.39
LDLR-202ENST00000455727 RANBP6O60518 1105 aaKnown RBP17.48■□□□□ 0.39
LDLR-202ENST00000455727 FMNL1O95466 1100 aaPredicted RBP17.48■□□□□ 0.39
LDLR-202ENST00000455727 CDC25BP30305 580 aa17.48■□□□□ 0.39
Retrieved 100 of 20,778 RNA–protein pairs in 33.4 ms