RNA–Protein interactions for RNA: ENST00000378526.8

LIG3-202, Transcript of DNA ligase 3, humanhuman

APPRIS P4 TSL 1 (best) BASIC

Gene LIG3, Length 8,400 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG3-202ENST00000378526 A0A0U1RQV1 116 aa7.3□□□□□ -1.24
LIG3-202ENST00000378526 FAM90A1Q86YD7 464 aa7.3□□□□□ -1.24
LIG3-202ENST00000378526 CHCHD5Q9BSY4 110 aa7.3□□□□□ -1.24
LIG3-202ENST00000378526 FBLN5Q9UBX5 448 aa7.3□□□□□ -1.24
LIG3-202ENST00000378526 MUC4Q99102 2169 aa7.29□□□□□ -1.24
LIG3-202ENST00000378526 SLURP2P0DP57 97 aa7.29□□□□□ -1.24
LIG3-202ENST00000378526 PHF7Q9BWX1 381 aaPredicted RBP7.29□□□□□ -1.24
LIG3-202ENST00000378526 STRCQ7RTU9 1775 aa7.29□□□□□ -1.24
LIG3-202ENST00000378526 TAF1LQ8IZX4 1826 aa7.29□□□□□ -1.24
LIG3-202ENST00000378526 COL14A1Q05707 1796 aaKnown RBP7.29□□□□□ -1.24
LIG3-202ENST00000378526 CICQ96RK0 1608 aaPredicted RBP7.29□□□□□ -1.24
LIG3-202ENST00000378526 HLA-DRB4P13762 266 aa7.29□□□□□ -1.24
LIG3-202ENST00000378526 HLA-DRB4X5D2U9 266 aa7.29□□□□□ -1.24
LIG3-202ENST00000378526 A0A1W2PPE3 182 aa7.29□□□□□ -1.24
LIG3-202ENST00000378526 J3QW42 95 aa7.29□□□□□ -1.24
LIG3-202ENST00000378526 IGFBPL1Q8WX77 278 aa7.29□□□□□ -1.24
LIG3-202ENST00000378526 BCORQ6W2J9 1755 aa7.29□□□□□ -1.24
LIG3-202ENST00000378526 MARF1Q9Y4F3 1742 aaKnown RBP7.29□□□□□ -1.24
LIG3-202ENST00000378526 CEACAM5P06731 702 aa7.29□□□□□ -1.24
LIG3-202ENST00000378526 CEACAM8P31997 349 aaPredicted RBP7.29□□□□□ -1.24
LIG3-202ENST00000378526 LYPD1Q8N2G4 141 aa7.29□□□□□ -1.24
LIG3-202ENST00000378526 TRGV4A0A0C4DH28 118 aa7.29□□□□□ -1.24
LIG3-202ENST00000378526 CCL25O15444 150 aa7.29□□□□□ -1.24
LIG3-202ENST00000378526 NDUFS5O43920 106 aa7.29□□□□□ -1.24
LIG3-202ENST00000378526 IGKV3-20P01619 116 aa7.29□□□□□ -1.24
LIG3-202ENST00000378526 IGLV3-25P01717 112 aa7.29□□□□□ -1.24
LIG3-202ENST00000378526 CBLN3Q6UW01 205 aa7.29□□□□□ -1.24
LIG3-202ENST00000378526 PROP1O75360 226 aa7.29□□□□□ -1.24
LIG3-202ENST00000378526 IGHMP01871 453 aa7.29□□□□□ -1.24
LIG3-202ENST00000378526 PATE4P0C8F1 98 aa7.29□□□□□ -1.24
LIG3-202ENST00000378526 ELSPBP1Q96BH3 223 aa7.29□□□□□ -1.24
LIG3-202ENST00000378526 PLA2G3Q9NZ20 509 aa7.29□□□□□ -1.24
LIG3-202ENST00000378526 LINC00527Q9UJ94 153 aa7.29□□□□□ -1.24
LIG3-202ENST00000378526 TEX48A0A1B0GUV7 120 aa7.29□□□□□ -1.24
LIG3-202ENST00000378526 A0A1W2PR77 199 aa7.29□□□□□ -1.24
LIG3-202ENST00000378526 C15orf61A6NNL5 157 aa7.29□□□□□ -1.24
LIG3-202ENST00000378526 PEAR1Q5VY43 1037 aaPredicted RBP7.28□□□□□ -1.24
LIG3-202ENST00000378526 STRCP1A6NGW2 1772 aa7.28□□□□□ -1.24
LIG3-202ENST00000378526 TRAV40A0A0B4J280 105 aa7.28□□□□□ -1.24
LIG3-202ENST00000378526 NGFRP08138 427 aa7.28□□□□□ -1.24
LIG3-202ENST00000378526 RPL36AP83881 106 aaKnown RBP7.28□□□□□ -1.24
LIG3-202ENST00000378526 RPL36ALQ969Q0 106 aaKnown RBP7.28□□□□□ -1.24
LIG3-202ENST00000378526 PILRAQ9UKJ1 303 aa7.28□□□□□ -1.24
LIG3-202ENST00000378526 ARID2Q68CP9 1835 aa7.28□□□□□ -1.24
LIG3-202ENST00000378526 GAS1P54826 345 aa7.28□□□□□ -1.24
LIG3-202ENST00000378526 NDUFV3P56181 108 aaKnown RBP7.28□□□□□ -1.24
LIG3-202ENST00000378526 LCNL1Q6ZST4 164 aa7.28□□□□□ -1.24
LIG3-202ENST00000378526 DEFB125Q8N687 156 aa7.28□□□□□ -1.24
LIG3-202ENST00000378526 RNF125Q96EQ8 232 aa7.28□□□□□ -1.24
LIG3-202ENST00000378526 DEFB109BQ30KR1 87 aa7.28□□□□□ -1.24
LIG3-202ENST00000378526 IFI6P09912 130 aa7.27□□□□□ -1.24
LIG3-202ENST00000378526 NMSQ5H8A3 153 aa7.27□□□□□ -1.24
LIG3-202ENST00000378526 ABCA3Q99758 1704 aa7.27□□□□□ -1.24
LIG3-202ENST00000378526 RHODO00212 210 aa7.27□□□□□ -1.25
LIG3-202ENST00000378526 CMC4P56277 68 aaPredicted RBP7.27□□□□□ -1.25
LIG3-202ENST00000378526 C10orf105Q8TEF2 133 aa7.27□□□□□ -1.25
LIG3-202ENST00000378526 VSIG2Q96IQ7 327 aa7.27□□□□□ -1.25
LIG3-202ENST00000378526 MESP1Q9BRJ9 268 aa7.27□□□□□ -1.25
LIG3-202ENST00000378526 ITGB4P16144 1822 aa7.27□□□□□ -1.25
LIG3-202ENST00000378526 A0A087WX48 190 aa7.27□□□□□ -1.25
LIG3-202ENST00000378526 TRGV3P03979 118 aa7.27□□□□□ -1.25
LIG3-202ENST00000378526 MORN2Q502X0 79 aa7.27□□□□□ -1.25
LIG3-202ENST00000378526 IL17RELQ6ZVW7 336 aa7.27□□□□□ -1.25
LIG3-202ENST00000378526 PPP1R32Q7Z5V6 425 aa7.27□□□□□ -1.25
LIG3-202ENST00000378526 C18orf32Q8TCD1 76 aa7.27□□□□□ -1.25
LIG3-202ENST00000378526 A0A0A6YYD4 124 aa7.27□□□□□ -1.25
LIG3-202ENST00000378526 IGHV2-5P01817 119 aa7.27□□□□□ -1.25
LIG3-202ENST00000378526 GFERP55789 205 aa7.27□□□□□ -1.25
LIG3-202ENST00000378526 C12orf74Q32Q52 190 aa7.27□□□□□ -1.25
LIG3-202ENST00000378526 SHISA4Q96DD7 197 aa7.27□□□□□ -1.25
LIG3-202ENST00000378526 C14orf132Q9NPU4 83 aa7.27□□□□□ -1.25
LIG3-202ENST00000378526 TNRC6CQ9HCJ0 1690 aaKnown RBP7.27□□□□□ -1.25
LIG3-202ENST00000378526 TRAV25A0A0B4J276 109 aa7.27□□□□□ -1.25
LIG3-202ENST00000378526 K7EMI3 77 aa7.27□□□□□ -1.25
LIG3-202ENST00000378526 BAALC-AS2P0C853 105 aa7.27□□□□□ -1.25
LIG3-202ENST00000378526 CFPP27918 469 aa7.27□□□□□ -1.25
LIG3-202ENST00000378526 STHQ8IWL8 128 aa7.27□□□□□ -1.25
LIG3-202ENST00000378526 VSIRQ9H7M9 311 aa7.27□□□□□ -1.25
LIG3-202ENST00000378526 CCL26Q9Y258 94 aa7.27□□□□□ -1.25
LIG3-202ENST00000378526 UBE2AP49459 152 aa7.27□□□□□ -1.25
LIG3-202ENST00000378526 PLCE1Q9P212 2302 aa7.27□□□□□ -1.25
LIG3-202ENST00000378526 PLXNA3P51805 1871 aa7.27□□□□□ -1.25
LIG3-202ENST00000378526 FAM236DA0A1B0GTK5 79 aa7.27□□□□□ -1.25
LIG3-202ENST00000378526 EFEMP2O95967 443 aa7.27□□□□□ -1.25
LIG3-202ENST00000378526 FAM236CP0DP71 79 aa7.27□□□□□ -1.25
LIG3-202ENST00000378526 SRSF2Q01130 221 aaKnown RBP7.27□□□□□ -1.25
LIG3-202ENST00000378526 ITLN2Q8WWU7 325 aaPredicted RBP7.27□□□□□ -1.25
LIG3-202ENST00000378526 LSM4Q9Y4Z0 139 aaKnown RBP7.27□□□□□ -1.25
LIG3-202ENST00000378526 C1QCP02747 245 aa7.26□□□□□ -1.25
LIG3-202ENST00000378526 HS3ST6Q96QI5 342 aa7.26□□□□□ -1.25
LIG3-202ENST00000378526 CCL13Q99616 98 aa7.26□□□□□ -1.25
LIG3-202ENST00000378526 TICRRQ7Z2Z1 1910 aa7.26□□□□□ -1.25
LIG3-202ENST00000378526 VDAC2P45880 294 aaPredicted RBP7.26□□□□□ -1.25
LIG3-202ENST00000378526 TRBV6-7A0A0A0MS04 114 aa7.26□□□□□ -1.25
LIG3-202ENST00000378526 LPAL2Q16609 132 aa7.26□□□□□ -1.25
LIG3-202ENST00000378526 TMEM219Q86XT9 240 aa7.26□□□□□ -1.25
LIG3-202ENST00000378526 PLXNB2O15031 1838 aa7.26□□□□□ -1.25
LIG3-202ENST00000378526 TNRC6BQ9UPQ9 1833 aaKnown RBP7.26□□□□□ -1.25
LIG3-202ENST00000378526 EP300Q09472 2414 aaPredicted RBP7.26□□□□□ -1.25
LIG3-202ENST00000378526 SBF1O95248 1867 aa7.26□□□□□ -1.25
Retrieved 100 of 20,778 RNA–protein pairs in 30 ms