RNA–Protein interactions for RNA: ENST00000570937.1

NUP88-202, Transcript of nucleoporin 88, humanhuman

TSL 3

Gene NUP88, Length 361 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP88-202ENST00000570937 HERPUD1Q15011 391 aa2.92□□□□□ -1.94
NUP88-202ENST00000570937 HMGN3Q15651 99 aa2.92□□□□□ -1.94
NUP88-202ENST00000570937 ABCA11PQ4W5N1 156 aa2.92□□□□□ -1.94
NUP88-202ENST00000570937 MORN2Q502X0 79 aa2.92□□□□□ -1.94
NUP88-202ENST00000570937 CT45A1Q5HYN5 189 aa2.92□□□□□ -1.94
NUP88-202ENST00000570937 UTF1Q5T230 341 aa2.92□□□□□ -1.94
NUP88-202ENST00000570937 IDNKQ5T6J7 187 aa2.92□□□□□ -1.94
NUP88-202ENST00000570937 FAM71F2Q6NXP2 309 aa2.92□□□□□ -1.94
NUP88-202ENST00000570937 SFXN4Q6P4A7 337 aa2.92□□□□□ -1.94
NUP88-202ENST00000570937 PET117Q6UWS5 81 aa2.92□□□□□ -1.94
NUP88-202ENST00000570937 SLC25A48Q6ZT89 311 aaKnown RBP2.92□□□□□ -1.94
NUP88-202ENST00000570937 DYNAPQ8N1N2 210 aa2.92□□□□□ -1.94
NUP88-202ENST00000570937 Q8N2B8 174 aa2.92□□□□□ -1.94
NUP88-202ENST00000570937 DRAM1Q8N682 238 aa2.92□□□□□ -1.94
NUP88-202ENST00000570937 OR4A4PQ8NGN8 299 aa2.92□□□□□ -1.94
NUP88-202ENST00000570937 OR56B4Q8NH76 319 aa2.92□□□□□ -1.94
NUP88-202ENST00000570937 OR1L1Q8NH94 360 aa2.92□□□□□ -1.94
NUP88-202ENST00000570937 CT45A3Q8NHU0 189 aa2.92□□□□□ -1.94
NUP88-202ENST00000570937 RTN4IP1Q8WWV3 396 aaPredicted RBP2.92□□□□□ -1.94
NUP88-202ENST00000570937 ACOT12Q8WYK0 555 aa2.92□□□□□ -1.94
NUP88-202ENST00000570937 AP3S1Q92572 193 aa2.92□□□□□ -1.94
NUP88-202ENST00000570937 LEAP2Q969E1 77 aa2.92□□□□□ -1.94
NUP88-202ENST00000570937 S100A16Q96FQ6 103 aaKnown RBP2.92□□□□□ -1.94
NUP88-202ENST00000570937 ARHGAP5-AS1Q96IT6 56 aa2.92□□□□□ -1.94
NUP88-202ENST00000570937 TSC22D3Q99576 134 aa2.92□□□□□ -1.94
NUP88-202ENST00000570937 NICN1Q9BSH3 213 aa2.92□□□□□ -1.94
NUP88-202ENST00000570937 PECRQ9BY49 303 aa2.92□□□□□ -1.94
NUP88-202ENST00000570937 OR51E2Q9H255 320 aa2.92□□□□□ -1.94
NUP88-202ENST00000570937 DCSTAMPQ9H295 470 aa2.92□□□□□ -1.94
NUP88-202ENST00000570937 MBD2Q9UBB5 411 aa2.92□□□□□ -1.94
NUP88-202ENST00000570937 AK3Q9UIJ7 227 aa2.92□□□□□ -1.94
NUP88-202ENST00000570937 ZNF221Q9UK13 617 aa2.92□□□□□ -1.94
NUP88-202ENST00000570937 CUBNO60494 3623 aa2.92□□□□□ -1.94
NUP88-202ENST00000570937 IGHV3-43A0A0B4J1X8 118 aa2.91□□□□□ -1.94
NUP88-202ENST00000570937 OR5H14A6NHG9 310 aa2.91□□□□□ -1.94
NUP88-202ENST00000570937 H7C2Y5 167 aa2.91□□□□□ -1.94
NUP88-202ENST00000570937 CTDSPLO15194 276 aa2.91□□□□□ -1.94
NUP88-202ENST00000570937 FABP7O15540 132 aa2.91□□□□□ -1.94
NUP88-202ENST00000570937 CHST1O43916 411 aa2.91□□□□□ -1.94
NUP88-202ENST00000570937 NOL3O60936 208 aaKnown RBP2.91□□□□□ -1.94
NUP88-202ENST00000570937 RBBP9O75884 186 aa2.91□□□□□ -1.94
NUP88-202ENST00000570937 SLC22A5O76082 557 aa2.91□□□□□ -1.94
NUP88-202ENST00000570937 IGKV1D-33P01593 117 aa2.91□□□□□ -1.94
NUP88-202ENST00000570937 IGKV1-33P01594 117 aa2.91□□□□□ -1.94
NUP88-202ENST00000570937 OPN1MWP04001 364 aa2.91□□□□□ -1.94
NUP88-202ENST00000570937 OPN1MW2P0DN77 364 aa2.91□□□□□ -1.94
NUP88-202ENST00000570937 OPN1MW3P0DN78 364 aa2.91□□□□□ -1.94
NUP88-202ENST00000570937 OR5H8P0DN80 308 aa2.91□□□□□ -1.94
NUP88-202ENST00000570937 IGHV3-43DP0DP04 118 aa2.91□□□□□ -1.94
NUP88-202ENST00000570937 HIST1H1DP16402 221 aaKnown RBP2.91□□□□□ -1.94
NUP88-202ENST00000570937 M6PRP20645 277 aa2.91□□□□□ -1.94
NUP88-202ENST00000570937 DTYMKP23919 212 aa2.91□□□□□ -1.94
NUP88-202ENST00000570937 CD24P25063 80 aa2.91□□□□□ -1.94
NUP88-202ENST00000570937 PAX6P26367 422 aa2.91□□□□□ -1.94
NUP88-202ENST00000570937 SOX6P35712 828 aa2.91□□□□□ -1.94
NUP88-202ENST00000570937 PPP1CCP36873 323 aaKnown RBP2.91□□□□□ -1.94
NUP88-202ENST00000570937 CBX5P45973 191 aa2.91□□□□□ -1.94
NUP88-202ENST00000570937 REG1BP48304 166 aa2.91□□□□□ -1.94
NUP88-202ENST00000570937 RORCP51449 518 aa2.91□□□□□ -1.94
NUP88-202ENST00000570937 EFNB2P52799 333 aa2.91□□□□□ -1.94
NUP88-202ENST00000570937 BLCAPP62952 87 aa2.91□□□□□ -1.94
NUP88-202ENST00000570937 HLA-DRB3P79483 266 aa2.91□□□□□ -1.94
NUP88-202ENST00000570937 EBI3Q14213 229 aa2.91□□□□□ -1.94
NUP88-202ENST00000570937 CDNFQ49AH0 187 aa2.91□□□□□ -1.94
NUP88-202ENST00000570937 LDLRAD2Q5SZI1 272 aa2.91□□□□□ -1.94
NUP88-202ENST00000570937 HACD4Q5VWC8 232 aa2.91□□□□□ -1.94
NUP88-202ENST00000570937 ZNF880Q6PDB4 577 aa2.91□□□□□ -1.94
NUP88-202ENST00000570937 Q6ZS49 121 aa2.91□□□□□ -1.94
NUP88-202ENST00000570937 ZNF833PQ6ZTB9 187 aa2.91□□□□□ -1.94
NUP88-202ENST00000570937 COMMD1Q8N668 190 aa2.91□□□□□ -1.94
NUP88-202ENST00000570937 UXS1Q8NBZ7 420 aa2.91□□□□□ -1.94
NUP88-202ENST00000570937 ZNF436-AS1Q8NC38 126 aaPredicted RBP2.91□□□□□ -1.94
NUP88-202ENST00000570937 ZNF439Q8NDP4 499 aa2.91□□□□□ -1.94
NUP88-202ENST00000570937 BEST4Q8NFU0 473 aa2.91□□□□□ -1.94
NUP88-202ENST00000570937 OR4F17Q8NGA8 305 aa2.91□□□□□ -1.94
NUP88-202ENST00000570937 OR4X2Q8NGF9 303 aa2.91□□□□□ -1.94
NUP88-202ENST00000570937 UBALD1Q8TB05 177 aa2.91□□□□□ -1.94
NUP88-202ENST00000570937 OR4F4Q96R69 305 aa2.91□□□□□ -1.94
NUP88-202ENST00000570937 RNF5Q99942 180 aa2.91□□□□□ -1.94
NUP88-202ENST00000570937 CITED1Q99966 193 aa2.91□□□□□ -1.94
NUP88-202ENST00000570937 RASL11BQ9BPW5 248 aa2.91□□□□□ -1.94
NUP88-202ENST00000570937 ZNF251Q9BRH9 671 aa2.91□□□□□ -1.94
NUP88-202ENST00000570937 GINS4Q9BRT9 223 aa2.91□□□□□ -1.94
NUP88-202ENST00000570937 ST6GALNAC5Q9BVH7 336 aa2.91□□□□□ -1.94
NUP88-202ENST00000570937 FUNDC2Q9BWH2 189 aa2.91□□□□□ -1.94
NUP88-202ENST00000570937 MRPS26Q9BYN8 205 aaKnown RBP2.91□□□□□ -1.94
NUP88-202ENST00000570937 RHBDL2Q9NX52 303 aa2.91□□□□□ -1.94
NUP88-202ENST00000570937 RBM7Q9Y580 266 aaKnown RBP2.91□□□□□ -1.94
NUP88-202ENST00000570937 TRBV6-7A0A0A0MS04 114 aa2.9□□□□□ -1.95
NUP88-202ENST00000570937 A0A0A6YYD4 124 aa2.9□□□□□ -1.95
NUP88-202ENST00000570937 TEX48A0A1B0GUV7 120 aa2.9□□□□□ -1.95
NUP88-202ENST00000570937 TCRBV4S1A1TA0A5B7 111 aa2.9□□□□□ -1.95
NUP88-202ENST00000570937 FAM168BA1KXE4 195 aa2.9□□□□□ -1.95
NUP88-202ENST00000570937 SMIM30A4D0T7 59 aa2.9□□□□□ -1.95
NUP88-202ENST00000570937 MFNGO00587 321 aa2.9□□□□□ -1.95
NUP88-202ENST00000570937 BET1O15155 118 aa2.9□□□□□ -1.95
NUP88-202ENST00000570937 ST8SIA3O43173 380 aa2.9□□□□□ -1.95
NUP88-202ENST00000570937 APOA1P02647 267 aa2.9□□□□□ -1.95
NUP88-202ENST00000570937 APOA2P02652 100 aa2.9□□□□□ -1.95
NUP88-202ENST00000570937 FCGR3AP08637 254 aa2.9□□□□□ -1.95
Retrieved 100 of 20,778 RNA–protein pairs in 35 ms