RNA–Protein interactions for RNA: ENST00000570937.1

NUP88-202, Transcript of nucleoporin 88, humanhuman

TSL 3

Gene NUP88, Length 361 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP88-202ENST00000570937 AEBP2Q6ZN18 517 aaPredicted RBP23.16■■□□□ 1.3
NUP88-202ENST00000570937 CHIC1Q5VXU3 224 aa22.55■■□□□ 1.2
NUP88-202ENST00000570937 PHF23Q9BUL5 403 aaPredicted RBP19.81■□□□□ 0.76
NUP88-202ENST00000570937 SENP3Q9H4L4 574 aaPredicted RBP19.68■□□□□ 0.74
NUP88-202ENST00000570937 FOXD1Q16676 465 aa18.28■□□□□ 0.52
NUP88-202ENST00000570937 PLPPR3Q6T4P5 718 aa18.28■□□□□ 0.52
NUP88-202ENST00000570937 POTEDQ86YR6 584 aa17.64■□□□□ 0.41
NUP88-202ENST00000570937 PPP6R1Q9UPN7 881 aa17.49■□□□□ 0.39
NUP88-202ENST00000570937 ADRA2BP18089 450 aa17.45■□□□□ 0.38
NUP88-202ENST00000570937 PIAS4Q8N2W9 510 aaPredicted RBP17.17■□□□□ 0.34
NUP88-202ENST00000570937 MSH5O43196 834 aa17.1■□□□□ 0.33
NUP88-202ENST00000570937 PPP4R3CPQ6ZMV5 832 aa16.07■□□□□ 0.16
NUP88-202ENST00000570937 SCAF1Q9H7N4 1312 aaKnown RBP16.01■□□□□ 0.15
NUP88-202ENST00000570937 MAPK8IP2Q13387 824 aaPredicted RBP15.85■□□□□ 0.13
NUP88-202ENST00000570937 DMRT2Q9Y5R5 561 aa15.7■□□□□ 0.1
NUP88-202ENST00000570937 CNKSR2Q8WXI2 1034 aa15.67■□□□□ 0.1
NUP88-202ENST00000570937 NCBP3Q53F19 620 aaKnown RBP15.64■□□□□ 0.09
NUP88-202ENST00000570937 KCNA4P22459 653 aa15.59■□□□□ 0.09
NUP88-202ENST00000570937 NPM3O75607 178 aaKnown RBP15.4■□□□□ 0.06
NUP88-202ENST00000570937 RNF216Q9NWF9 866 aaPredicted RBP15.39■□□□□ 0.05
NUP88-202ENST00000570937 HOXD11P31277 338 aaPredicted RBP15.37■□□□□ 0.05
NUP88-202ENST00000570937 DNAJC5BQ9UF47 199 aa15.08■□□□□ 0
NUP88-202ENST00000570937 DCAF8L1A6NGE4 600 aa15.01□□□□□ -0.01
NUP88-202ENST00000570937 CACNB1Q02641 598 aaPredicted RBP14.94□□□□□ -0.02
NUP88-202ENST00000570937 SLC4A1APQ9BWU0 796 aaKnown RBP14.83□□□□□ -0.04
NUP88-202ENST00000570937 SLC4A2P04920 1241 aa14.58□□□□□ -0.08
NUP88-202ENST00000570937 GRWD1Q9BQ67 446 aaKnown RBP eCLIP14.57□□□□□ -0.08
NUP88-202ENST00000570937 RNF39Q9H2S5 420 aa14.54□□□□□ -0.08
NUP88-202ENST00000570937 FOXD4L1Q9NU39 408 aa14.4□□□□□ -0.1
NUP88-202ENST00000570937 U3KPZ7 1027 aaPredicted RBP14.37□□□□□ -0.11
NUP88-202ENST00000570937 ZBTB22O15209 634 aa14.35□□□□□ -0.11
NUP88-202ENST00000570937 C1QBPQ07021 282 aaKnown RBP14.33□□□□□ -0.12
NUP88-202ENST00000570937 EHMT2Q96KQ7 1210 aa14.25□□□□□ -0.13
NUP88-202ENST00000570937 MYCNP04198 464 aaPredicted RBP14.24□□□□□ -0.13
NUP88-202ENST00000570937 CSRNP3Q8WYN3 585 aa14.21□□□□□ -0.13
NUP88-202ENST00000570937 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP14.17□□□□□ -0.14
NUP88-202ENST00000570937 HNRNPUL2Q1KMD3 747 aaKnown RBP14.17□□□□□ -0.14
NUP88-202ENST00000570937 SAMD1Q6SPF0 538 aaPredicted RBP14.11□□□□□ -0.15
NUP88-202ENST00000570937 APLP2Q06481 763 aa14.04□□□□□ -0.16
NUP88-202ENST00000570937 SPINK5Q9NQ38 1064 aaPredicted RBP13.95□□□□□ -0.18
NUP88-202ENST00000570937 ATXN8OSP0DMR3 200 aa13.94□□□□□ -0.18
NUP88-202ENST00000570937 CAPN15O75808 1086 aa13.89□□□□□ -0.19
NUP88-202ENST00000570937 ZNF219Q9P2Y4 722 aaPredicted RBP13.85□□□□□ -0.19
NUP88-202ENST00000570937 ATF5Q9Y2D1 282 aaPredicted RBP13.84□□□□□ -0.19
NUP88-202ENST00000570937 TRHP20396 242 aaPredicted RBP13.79□□□□□ -0.2
NUP88-202ENST00000570937 DSG3P32926 999 aa13.73□□□□□ -0.21
NUP88-202ENST00000570937 POTEHQ6S545 545 aa13.7□□□□□ -0.22
NUP88-202ENST00000570937 ABCB7O75027 752 aa13.6□□□□□ -0.23
NUP88-202ENST00000570937 POLA2Q14181 598 aa13.58□□□□□ -0.24
NUP88-202ENST00000570937 ZBTB12Q9Y330 459 aaPredicted RBP13.39□□□□□ -0.27
NUP88-202ENST00000570937 FBLN2P98095 1184 aa13.27□□□□□ -0.29
NUP88-202ENST00000570937 MKRN4PQ13434 485 aaPredicted RBP13.25□□□□□ -0.29
NUP88-202ENST00000570937 OSCARQ8IYS5 282 aa13.11□□□□□ -0.31
NUP88-202ENST00000570937 RBM42Q9BTD8 480 aaKnown RBP13.09□□□□□ -0.31
NUP88-202ENST00000570937 SPDYE2BA6NHP3 402 aa13.02□□□□□ -0.33
NUP88-202ENST00000570937 SPDYE6P0CI01 402 aa13.02□□□□□ -0.33
NUP88-202ENST00000570937 SPDYE2Q495Y8 402 aa13.02□□□□□ -0.33
NUP88-202ENST00000570937 ZNF692Q9BU19 519 aaPredicted RBP12.92□□□□□ -0.34
NUP88-202ENST00000570937 SSUH2Q9Y2M2 353 aa12.92□□□□□ -0.34
NUP88-202ENST00000570937 SPDYE4A6NLX3 237 aa12.91□□□□□ -0.34
NUP88-202ENST00000570937 AKT1S1Q96B36 256 aa12.91□□□□□ -0.34
NUP88-202ENST00000570937 FKBP8Q14318 412 aa12.82□□□□□ -0.36
NUP88-202ENST00000570937 REM2Q8IYK8 340 aaPredicted RBP12.77□□□□□ -0.37
NUP88-202ENST00000570937 PABPN1Q86U42 306 aaKnown RBP eCLIP12.75□□□□□ -0.37
NUP88-202ENST00000570937 PROM2Q8N271 834 aa12.75□□□□□ -0.37
NUP88-202ENST00000570937 CHRDL2Q6WN34 429 aa12.73□□□□□ -0.37
NUP88-202ENST00000570937 SPDYE1Q8NFV5 336 aaPredicted RBP12.64□□□□□ -0.39
NUP88-202ENST00000570937 PITPNM1O00562 1244 aa12.61□□□□□ -0.39
NUP88-202ENST00000570937 SP7Q8TDD2 431 aaPredicted RBP12.58□□□□□ -0.4
NUP88-202ENST00000570937 STAG3Q9UJ98 1225 aa12.55□□□□□ -0.4
NUP88-202ENST00000570937 CLEC11AQ9Y240 323 aa12.53□□□□□ -0.4
NUP88-202ENST00000570937 PRR29P0C7W0 189 aa12.45□□□□□ -0.42
NUP88-202ENST00000570937 FXR2P51116 673 aaKnown RBP eCLIP12.44□□□□□ -0.42
NUP88-202ENST00000570937 PIP4P2Q8N4L2 257 aa12.44□□□□□ -0.42
NUP88-202ENST00000570937 FBXO3Q9UK99 471 aa12.42□□□□□ -0.42
NUP88-202ENST00000570937 PRKAR2AP13861 404 aaKnown RBP12.28□□□□□ -0.44
NUP88-202ENST00000570937 CREBZFQ9NS37 354 aa12.28□□□□□ -0.44
NUP88-202ENST00000570937 VASPP50552 380 aaPredicted RBP12.24□□□□□ -0.45
NUP88-202ENST00000570937 CHADLQ6NUI6 762 aa12.24□□□□□ -0.45
NUP88-202ENST00000570937 MIER1Q8N108 512 aa12.22□□□□□ -0.45
NUP88-202ENST00000570937 PLCD3Q8N3E9 789 aa12.19□□□□□ -0.46
NUP88-202ENST00000570937 HAX1O00165 279 aa12.18□□□□□ -0.46
NUP88-202ENST00000570937 PLEKHG5O94827 1062 aa12.18□□□□□ -0.46
NUP88-202ENST00000570937 MNX1P50219 401 aaPredicted RBP12.17□□□□□ -0.46
NUP88-202ENST00000570937 FARP1Q9Y4F1 1045 aaPredicted RBP12.16□□□□□ -0.46
NUP88-202ENST00000570937 ZBTB47Q9UFB7 747 aaPredicted RBP12.11□□□□□ -0.47
NUP88-202ENST00000570937 NPM1P06748 294 aaKnown RBP eCLIP12.08□□□□□ -0.48
NUP88-202ENST00000570937 IFNLR1Q8IU57 520 aaPredicted RBP12.07□□□□□ -0.48
NUP88-202ENST00000570937 EVX2Q03828 476 aa12.02□□□□□ -0.49
NUP88-202ENST00000570937 KLHL34Q8N239 644 aa12.01□□□□□ -0.49
NUP88-202ENST00000570937 C19orf67A6NJJ6 358 aa12□□□□□ -0.49
NUP88-202ENST00000570937 NUBP1P53384 320 aa11.97□□□□□ -0.49
NUP88-202ENST00000570937 SPOCK2Q92563 424 aa11.94□□□□□ -0.5
NUP88-202ENST00000570937 CD44P16070 742 aaKnown RBP11.93□□□□□ -0.5
NUP88-202ENST00000570937 RASEFQ8IZ41 740 aa11.91□□□□□ -0.5
NUP88-202ENST00000570937 PAK3O75914 559 aaPredicted RBP11.87□□□□□ -0.51
NUP88-202ENST00000570937 FAM212AQ96EL1 285 aa11.85□□□□□ -0.51
NUP88-202ENST00000570937 ZRANB1Q9UGI0 708 aa11.84□□□□□ -0.51
NUP88-202ENST00000570937 TSPYL2Q9H2G4 693 aaPredicted RBP11.83□□□□□ -0.52
NUP88-202ENST00000570937 GSE1Q14687 1217 aa11.81□□□□□ -0.52
Retrieved 100 of 20,778 RNA–protein pairs in 138.8 ms