RNA–Protein interactions for RNA: ENST00000419110.5

HMGB3-202, Transcript of high mobility group box 3, humanhuman

APPRIS ALT2 TSL 3

Gene HMGB3, Length 707 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB3-202ENST00000419110 C1RLQ9NZP8 487 aa4.8□□□□□ -1.64
HMGB3-202ENST00000419110 METTL1Q9UBP6 276 aaKnown RBP4.8□□□□□ -1.64
HMGB3-202ENST00000419110 FAM96BQ9Y3D0 163 aa4.8□□□□□ -1.64
HMGB3-202ENST00000419110 CCDC168Q8NDH2 2452 aa4.8□□□□□ -1.64
HMGB3-202ENST00000419110 FLNAP21333 2647 aaKnown RBP4.79□□□□□ -1.64
HMGB3-202ENST00000419110 ABCA1O95477 2261 aa4.79□□□□□ -1.64
HMGB3-202ENST00000419110 TRAV3A0A0B4J244 114 aa4.79□□□□□ -1.64
HMGB3-202ENST00000419110 CENPVL3A0A0U1RRI6 287 aa4.79□□□□□ -1.64
HMGB3-202ENST00000419110 FAM24AA6NFZ4 105 aa4.79□□□□□ -1.64
HMGB3-202ENST00000419110 RRHO14718 337 aa4.79□□□□□ -1.64
HMGB3-202ENST00000419110 TSPAN9O75954 239 aa4.79□□□□□ -1.64
HMGB3-202ENST00000419110 CST7O76096 145 aa4.79□□□□□ -1.64
HMGB3-202ENST00000419110 IFNA10P01566 189 aa4.79□□□□□ -1.64
HMGB3-202ENST00000419110 IFNA5P01569 189 aa4.79□□□□□ -1.64
HMGB3-202ENST00000419110 IGLV2-23P01705 113 aa4.79□□□□□ -1.64
HMGB3-202ENST00000419110 METTL15P1P0C7V9 234 aa4.79□□□□□ -1.64
HMGB3-202ENST00000419110 FAM106CPP0CH98 169 aa4.79□□□□□ -1.64
HMGB3-202ENST00000419110 IGHV4-31P0DP07 118 aa4.79□□□□□ -1.64
HMGB3-202ENST00000419110 HTR2BP41595 481 aa4.79□□□□□ -1.64
HMGB3-202ENST00000419110 DYNLT3P51808 116 aa4.79□□□□□ -1.64
HMGB3-202ENST00000419110 GNB1P62873 340 aa4.79□□□□□ -1.64
HMGB3-202ENST00000419110 PSG5Q15238 335 aa4.79□□□□□ -1.64
HMGB3-202ENST00000419110 TNXAQ16473 311 aa4.79□□□□□ -1.64
HMGB3-202ENST00000419110 PRSS8Q16651 343 aa4.79□□□□□ -1.64
HMGB3-202ENST00000419110 LRRC75BQ2VPJ9 315 aa4.79□□□□□ -1.64
HMGB3-202ENST00000419110 RUSC1-AS1Q66K80 236 aa4.79□□□□□ -1.64
HMGB3-202ENST00000419110 OR8G2PQ6IF36 304 aa4.79□□□□□ -1.64
HMGB3-202ENST00000419110 TEX261Q6UWH6 196 aa4.79□□□□□ -1.64
HMGB3-202ENST00000419110 TMEM14EPQ6UXP3 125 aa4.79□□□□□ -1.64
HMGB3-202ENST00000419110 HSD17B13Q7Z5P4 300 aaPredicted RBP4.79□□□□□ -1.64
HMGB3-202ENST00000419110 THNSL2Q86YJ6 484 aa4.79□□□□□ -1.64
HMGB3-202ENST00000419110 KRTAP1-3Q8IUG1 177 aa4.79□□□□□ -1.64
HMGB3-202ENST00000419110 TMEM217Q8N7C4 229 aa4.79□□□□□ -1.64
HMGB3-202ENST00000419110 ZNF680Q8NEM1 530 aa4.79□□□□□ -1.64
HMGB3-202ENST00000419110 OR5C1Q8NGR4 320 aa4.79□□□□□ -1.64
HMGB3-202ENST00000419110 ABHD5Q8WTS1 349 aa4.79□□□□□ -1.64
HMGB3-202ENST00000419110 SCARB1Q8WTV0 552 aa4.79□□□□□ -1.64
HMGB3-202ENST00000419110 OR4C12Q96R67 309 aa4.79□□□□□ -1.64
HMGB3-202ENST00000419110 FOXC2Q99958 501 aa4.79□□□□□ -1.64
HMGB3-202ENST00000419110 TMEM147Q9BVK8 224 aa4.79□□□□□ -1.64
HMGB3-202ENST00000419110 MOB4Q9Y3A3 225 aa4.79□□□□□ -1.64
HMGB3-202ENST00000419110 U3KQ87 197 aa4.79□□□□□ -1.64
HMGB3-202ENST00000419110 IGHV3OR16-10A0A075B7F0 116 aa4.78□□□□□ -1.64
HMGB3-202ENST00000419110 SMCO3A2RU48 225 aa4.78□□□□□ -1.64
HMGB3-202ENST00000419110 BTBD17A6NE02 478 aa4.78□□□□□ -1.64
HMGB3-202ENST00000419110 SRRM4A7MD48 611 aaKnown RBP4.78□□□□□ -1.64
HMGB3-202ENST00000419110 KCNAB3O43448 404 aa4.78□□□□□ -1.64
HMGB3-202ENST00000419110 NDUFA3O95167 84 aa4.78□□□□□ -1.64
HMGB3-202ENST00000419110 TMEM50AO95807 157 aa4.78□□□□□ -1.64
HMGB3-202ENST00000419110 CA2P00918 260 aa4.78□□□□□ -1.64
HMGB3-202ENST00000419110 TGFAP01135 160 aa4.78□□□□□ -1.64
HMGB3-202ENST00000419110 IGHV4-38-2P0DP08 117 aa4.78□□□□□ -1.64
HMGB3-202ENST00000419110 SNCAP37840 140 aa4.78□□□□□ -1.64
HMGB3-202ENST00000419110 COMPP49747 757 aaPredicted RBP4.78□□□□□ -1.64
HMGB3-202ENST00000419110 SUB1P53999 127 aaKnown RBP eCLIP4.78□□□□□ -1.64
HMGB3-202ENST00000419110 PAX9P55771 341 aa4.78□□□□□ -1.64
HMGB3-202ENST00000419110 ATP5IP56385 69 aaPredicted RBP4.78□□□□□ -1.64
HMGB3-202ENST00000419110 BPIFB3P59826 476 aa4.78□□□□□ -1.64
HMGB3-202ENST00000419110 ERHP84090 104 aaKnown RBP4.78□□□□□ -1.64
HMGB3-202ENST00000419110 IFITM2Q01629 132 aa4.78□□□□□ -1.64
HMGB3-202ENST00000419110 AKR1C1Q04828 323 aa4.78□□□□□ -1.64
HMGB3-202ENST00000419110 NDUFA5Q16718 116 aa4.78□□□□□ -1.64
HMGB3-202ENST00000419110 ATP6V1FQ16864 119 aa4.78□□□□□ -1.64
HMGB3-202ENST00000419110 C5orf64Q2M2E5 130 aa4.78□□□□□ -1.64
HMGB3-202ENST00000419110 C10orf55Q5SWW7 151 aa4.78□□□□□ -1.64
HMGB3-202ENST00000419110 LDLRAD2Q5SZI1 272 aa4.78□□□□□ -1.64
HMGB3-202ENST00000419110 CYB5R2Q6BCY4 276 aa4.78□□□□□ -1.64
HMGB3-202ENST00000419110 RPL7L1Q6DKI1 246 aaKnown RBP4.78□□□□□ -1.64
HMGB3-202ENST00000419110 ALKAL2Q6UX46 152 aa4.78□□□□□ -1.64
HMGB3-202ENST00000419110 BRD3OSQ6XYD6 125 aa4.78□□□□□ -1.64
HMGB3-202ENST00000419110 PPP1R27Q86WC6 154 aa4.78□□□□□ -1.64
HMGB3-202ENST00000419110 BAP18Q8IXM2 172 aa4.78□□□□□ -1.64
HMGB3-202ENST00000419110 UBAC2Q8NBM4 344 aa4.78□□□□□ -1.64
HMGB3-202ENST00000419110 OR10P1Q8NGE3 313 aa4.78□□□□□ -1.64
HMGB3-202ENST00000419110 LRRC20Q8TCA0 184 aa4.78□□□□□ -1.64
HMGB3-202ENST00000419110 SCGB1C1Q8TD33 95 aa4.78□□□□□ -1.64
HMGB3-202ENST00000419110 SRSF12Q8WXF0 261 aaKnown RBP4.78□□□□□ -1.64
HMGB3-202ENST00000419110 C22orf15Q8WYQ4 148 aa4.78□□□□□ -1.64
HMGB3-202ENST00000419110 ARPC1AQ92747 370 aa4.78□□□□□ -1.64
HMGB3-202ENST00000419110 GNPNAT1Q96EK6 184 aaPredicted RBP4.78□□□□□ -1.64
HMGB3-202ENST00000419110 EAF1Q96JC9 268 aaPredicted RBP4.78□□□□□ -1.64
HMGB3-202ENST00000419110 SRSF8Q9BRL6 282 aaKnown RBP4.78□□□□□ -1.64
HMGB3-202ENST00000419110 FBXL15Q9H469 300 aa4.78□□□□□ -1.64
HMGB3-202ENST00000419110 UQCC1Q9NVA1 299 aa4.78□□□□□ -1.64
HMGB3-202ENST00000419110 SIGLEC9Q9Y336 463 aa4.78□□□□□ -1.64
HMGB3-202ENST00000419110 CELSR2Q9HCU4 2923 aa4.78□□□□□ -1.64
HMGB3-202ENST00000419110 HECTD1Q9ULT8 2610 aa4.77□□□□□ -1.65
HMGB3-202ENST00000419110 A0A0U1RQK1 487 aa4.77□□□□□ -1.65
HMGB3-202ENST00000419110 NCBP2LA6PVI3 153 aaKnown RBP4.77□□□□□ -1.65
HMGB3-202ENST00000419110 C15orf62A8K5M9 175 aa4.77□□□□□ -1.65
HMGB3-202ENST00000419110 INS-IGF2F8WCM5 200 aa4.77□□□□□ -1.65
HMGB3-202ENST00000419110 CORTO00230 105 aa4.77□□□□□ -1.65
HMGB3-202ENST00000419110 CYB5BO43169 146 aa4.77□□□□□ -1.65
HMGB3-202ENST00000419110 CNIH1O95406 144 aa4.77□□□□□ -1.65
HMGB3-202ENST00000419110 HLA-DRB1P01911 266 aa4.77□□□□□ -1.65
HMGB3-202ENST00000419110 OPN1MWP04001 364 aa4.77□□□□□ -1.65
HMGB3-202ENST00000419110 IFNA4P05014 189 aa4.77□□□□□ -1.65
HMGB3-202ENST00000419110 IL6RP08887 468 aaPredicted RBP4.77□□□□□ -1.65
HMGB3-202ENST00000419110 OPN1MW2P0DN77 364 aa4.77□□□□□ -1.65
HMGB3-202ENST00000419110 OPN1MW3P0DN78 364 aa4.77□□□□□ -1.65
Retrieved 100 of 20,778 RNA–protein pairs in 43.5 ms