RNA–Protein interactions for RNA: ENST00000492980.1

CCDC88B-208, Transcript of coiled-coil domain containing 88B, humanhuman

TSL 5

Gene CCDC88B, Length 2,118 nt, Biotype processed transcript, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88B-208ENST00000492980 SIAH2O43255 324 aa17.27■□□□□ 0.35
CCDC88B-208ENST00000492980 ZNF833PQ6ZTB9 187 aa17.27■□□□□ 0.35
CCDC88B-208ENST00000492980 CYB561D1Q8N8Q1 229 aa17.27■□□□□ 0.35
CCDC88B-208ENST00000492980 MAP1LC3BQ9GZQ8 125 aa17.27■□□□□ 0.35
CCDC88B-208ENST00000492980 TMEM14BQ9NUH8 114 aa17.27■□□□□ 0.35
CCDC88B-208ENST00000492980 CISD1Q9NZ45 108 aaKnown RBP17.27■□□□□ 0.35
CCDC88B-208ENST00000492980 KAAG1Q9UBP8 84 aa17.27■□□□□ 0.35
CCDC88B-208ENST00000492980 DVL1O14640 695 aa17.26■□□□□ 0.35
CCDC88B-208ENST00000492980 RRHO14718 337 aa17.26■□□□□ 0.35
CCDC88B-208ENST00000492980 HRASP01112 189 aa17.26■□□□□ 0.35
CCDC88B-208ENST00000492980 ADORA2A-AS1P86434 159 aa17.26■□□□□ 0.35
CCDC88B-208ENST00000492980 SLC35D1Q9NTN3 355 aa17.26■□□□□ 0.35
CCDC88B-208ENST00000492980 PUS1Q9Y606 427 aaKnown RBP eCLIP17.26■□□□□ 0.35
CCDC88B-208ENST00000492980 COLCA2A8K830 154 aa17.26■□□□□ 0.35
CCDC88B-208ENST00000492980 H7C2Y5 167 aa17.26■□□□□ 0.35
CCDC88B-208ENST00000492980 BCL2P10415 239 aa17.26■□□□□ 0.35
CCDC88B-208ENST00000492980 LOXP28300 417 aaPredicted RBP17.26■□□□□ 0.35
CCDC88B-208ENST00000492980 PLA2G5P39877 138 aa17.26■□□□□ 0.35
CCDC88B-208ENST00000492980 HOXA1P49639 335 aaPredicted RBP17.26■□□□□ 0.35
CCDC88B-208ENST00000492980 RHEBQ15382 184 aa17.26■□□□□ 0.35
CCDC88B-208ENST00000492980 TMEM170AQ8WVE7 144 aa17.26■□□□□ 0.35
CCDC88B-208ENST00000492980 ZFP92A6NM28 416 aa17.25■□□□□ 0.35
CCDC88B-208ENST00000492980 PRSS46E5RG02 174 aa17.25■□□□□ 0.35
CCDC88B-208ENST00000492980 EIF3GO75821 320 aaKnown RBP eCLIP17.25■□□□□ 0.35
CCDC88B-208ENST00000492980 MBP02144 154 aa17.25■□□□□ 0.35
CCDC88B-208ENST00000492980 PAX6P26367 422 aa17.25■□□□□ 0.35
CCDC88B-208ENST00000492980 CEBPGP53567 150 aa17.25■□□□□ 0.35
CCDC88B-208ENST00000492980 CDSNQ15517 529 aa17.25■□□□□ 0.35
CCDC88B-208ENST00000492980 RTL8BQ17RB0 113 aa17.25■□□□□ 0.35
CCDC88B-208ENST00000492980 FFAR4Q5NUL3 377 aa17.25■□□□□ 0.35
CCDC88B-208ENST00000492980 OR13D1Q8NGV5 346 aa17.25■□□□□ 0.35
CCDC88B-208ENST00000492980 SLC39A9Q9NUM3 307 aa17.25■□□□□ 0.35
CCDC88B-208ENST00000492980 WDR83OSQ9Y284 106 aa17.25■□□□□ 0.35
CCDC88B-208ENST00000492980 IGKV1-16P04430 117 aa17.24■□□□□ 0.35
CCDC88B-208ENST00000492980 IL6RP08887 468 aaPredicted RBP17.24■□□□□ 0.35
CCDC88B-208ENST00000492980 CD1BP29016 333 aa17.24■□□□□ 0.35
CCDC88B-208ENST00000492980 HSPE1P61604 102 aaKnown RBP17.24■□□□□ 0.35
CCDC88B-208ENST00000492980 ABHD12Q8N2K0 398 aa17.24■□□□□ 0.35
CCDC88B-208ENST00000492980 Q8N7P7 452 aa17.24■□□□□ 0.35
CCDC88B-208ENST00000492980 ZNF709Q8N972 641 aa17.24■□□□□ 0.35
CCDC88B-208ENST00000492980 OR10G4Q8NGN3 311 aa17.24■□□□□ 0.35
CCDC88B-208ENST00000492980 KALRNO60229 2985 aa17.24■□□□□ 0.35
CCDC88B-208ENST00000492980 C15orf54Q8N8G6 183 aa17.24■□□□□ 0.35
CCDC88B-208ENST00000492980 C17orf112F2Z3M2 114 aa17.23■□□□□ 0.35
CCDC88B-208ENST00000492980 H3BQ15 152 aa17.23■□□□□ 0.35
CCDC88B-208ENST00000492980 DLX6P56179 175 aa17.23■□□□□ 0.35
CCDC88B-208ENST00000492980 OR10G9Q8NGN4 311 aa17.23■□□□□ 0.35
CCDC88B-208ENST00000492980 OR10G7Q8NGN6 311 aa17.23■□□□□ 0.35
CCDC88B-208ENST00000492980 LHX4Q969G2 390 aa17.23■□□□□ 0.35
CCDC88B-208ENST00000492980 GGACTQ9BVM4 153 aa17.23■□□□□ 0.35
CCDC88B-208ENST00000492980 MRPL20Q9BYC9 149 aaKnown RBP17.23■□□□□ 0.35
CCDC88B-208ENST00000492980 SLC25A22Q9H936 323 aa17.23■□□□□ 0.35
CCDC88B-208ENST00000492980 CTXND1A0A1B0GTU2 59 aa17.23■□□□□ 0.35
CCDC88B-208ENST00000492980 SRRM4A7MD48 611 aaKnown RBP17.23■□□□□ 0.35
CCDC88B-208ENST00000492980 SMUG1Q53HV7 270 aa17.23■□□□□ 0.35
CCDC88B-208ENST00000492980 NDUFA2O43678 99 aa17.22■□□□□ 0.35
CCDC88B-208ENST00000492980 MYOD1P15172 320 aa17.22■□□□□ 0.35
CCDC88B-208ENST00000492980 PMS2P11Q13670 270 aa17.22■□□□□ 0.35
CCDC88B-208ENST00000492980 MUC15Q8N387 334 aa17.22■□□□□ 0.35
CCDC88B-208ENST00000492980 TUBA4BQ9H853 241 aa17.22■□□□□ 0.35
CCDC88B-208ENST00000492980 PRNDQ9UKY0 176 aa17.22■□□□□ 0.35
CCDC88B-208ENST00000492980 OR51B2Q9Y5P1 312 aa17.22■□□□□ 0.35
CCDC88B-208ENST00000492980 UPK2O00526 184 aa17.21■□□□□ 0.35
CCDC88B-208ENST00000492980 FLI1Q01543 452 aaPredicted RBP17.21■□□□□ 0.35
CCDC88B-208ENST00000492980 ZNF672Q499Z4 452 aaPredicted RBP17.21■□□□□ 0.35
CCDC88B-208ENST00000492980 TMEM155Q4W5P6 130 aa17.21■□□□□ 0.35
CCDC88B-208ENST00000492980 ZNF596Q8TC21 504 aa17.21■□□□□ 0.35
CCDC88B-208ENST00000492980 SPTA1P02549 2419 aa17.21■□□□□ 0.35
CCDC88B-208ENST00000492980 RAB11AP62491 216 aa17.21■□□□□ 0.35
CCDC88B-208ENST00000492980 DLK1P80370 383 aa17.21■□□□□ 0.35
CCDC88B-208ENST00000492980 C8orf31Q8N9H6 132 aa17.21■□□□□ 0.35
CCDC88B-208ENST00000492980 CA5BP1Q8WTZ4 195 aa17.21■□□□□ 0.35
CCDC88B-208ENST00000492980 RAB39BQ96DA2 213 aa17.21■□□□□ 0.35
CCDC88B-208ENST00000492980 ACTR3CQ9C0K3 210 aaPredicted RBP17.21■□□□□ 0.35
CCDC88B-208ENST00000492980 SMCO3A2RU48 225 aa17.2■□□□□ 0.34
CCDC88B-208ENST00000492980 IFNA1P01562 189 aa17.2■□□□□ 0.34
CCDC88B-208ENST00000492980 FAM90A2PQ658T7 463 aa17.2■□□□□ 0.34
CCDC88B-208ENST00000492980 FAM122CQ6P4D5 195 aa17.2■□□□□ 0.34
CCDC88B-208ENST00000492980 LINC00311Q8N616 119 aa17.2■□□□□ 0.34
CCDC88B-208ENST00000492980 SLC24A4Q8NFF2 622 aa17.2■□□□□ 0.34
CCDC88B-208ENST00000492980 VAX2Q9UIW0 290 aa17.2■□□□□ 0.34
CCDC88B-208ENST00000492980 SPTBN4Q9H254 2564 aa17.2■□□□□ 0.34
CCDC88B-208ENST00000492980 H0YJW9 148 aa17.2■□□□□ 0.34
CCDC88B-208ENST00000492980 J3QR06 171 aa17.2■□□□□ 0.34
CCDC88B-208ENST00000492980 HMGB3O15347 200 aaKnown RBP17.2■□□□□ 0.34
CCDC88B-208ENST00000492980 CRYBA1P05813 215 aa17.2■□□□□ 0.34
CCDC88B-208ENST00000492980 TREML4Q6UXN2 200 aa17.2■□□□□ 0.34
CCDC88B-208ENST00000492980 P2RX4Q99571 388 aa17.2■□□□□ 0.34
CCDC88B-208ENST00000492980 ENY2Q9NPA8 101 aa17.2■□□□□ 0.34
CCDC88B-208ENST00000492980 MLXQ9UH92 298 aa17.2■□□□□ 0.34
CCDC88B-208ENST00000492980 ZNF257Q9Y2Q1 563 aa17.2■□□□□ 0.34
CCDC88B-208ENST00000492980 LYNX1G3V0Z9 82 aa17.19■□□□□ 0.34
CCDC88B-208ENST00000492980 MPDU1O75352 247 aa17.19■□□□□ 0.34
CCDC88B-208ENST00000492980 APOA2P02652 100 aa17.19■□□□□ 0.34
CCDC88B-208ENST00000492980 IFNA4P05014 189 aa17.19■□□□□ 0.34
CCDC88B-208ENST00000492980 C1QTNF9P0C862 333 aa17.19■□□□□ 0.34
CCDC88B-208ENST00000492980 LYNX1P0DP58 116 aa17.19■□□□□ 0.34
CCDC88B-208ENST00000492980 NPY1RP25929 384 aa17.19■□□□□ 0.34
CCDC88B-208ENST00000492980 AVPI1Q5T686 147 aa17.19■□□□□ 0.34
CCDC88B-208ENST00000492980 OR5AN1Q8NGI8 311 aa17.19■□□□□ 0.34
Retrieved 100 of 20,778 RNA–protein pairs in 36.1 ms