RNA–Protein interactions for RNA: YNL288W

CAF40, Transcript of Component of the CCR4-NOT transcriptional complex, yeastyeast

Gene CAF40, Length 1,122 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (RIP-Chip)
Gene Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score Detected Interaction
CAF40YNL288W RSC4Q02206 625 aa6.52□□□□□ -1.37
CAF40YNL288W TIF35Q04067 274 aaKnown RBP6.52□□□□□ -1.37
CAF40YNL288W YLR287CQ05881 355 aa6.52□□□□□ -1.37
CAF40YNL288W ABP140Q08641 628 aaKnown RBP6.52□□□□□ -1.37
CAF40YNL288W SOG2Q08817 791 aa6.52□□□□□ -1.37
CAF40YNL288W PKH2Q12236 1081 aaKnown RBP6.52□□□□□ -1.37
CAF40YNL288W TY4A-HQ6Q5P6 413 aa6.52□□□□□ -1.37
CAF40YNL288W PRC1P00729 532 aa6.51□□□□□ -1.37
CAF40YNL288W GAL80P04387 435 aa6.51□□□□□ -1.37
CAF40YNL288W GAL10P04397 699 aa6.51□□□□□ -1.37
CAF40YNL288W IME1P21190 360 aa6.51□□□□□ -1.37
CAF40YNL288W SEC21P32074 935 aaKnown RBP6.51□□□□□ -1.37
CAF40YNL288W CBF2P32504 956 aa6.51□□□□□ -1.37
CAF40YNL288W VPH1P32563 840 aaKnown RBP6.51□□□□□ -1.37
CAF40YNL288W XRS2P33301 854 aa6.51□□□□□ -1.37
CAF40YNL288W HMT1P38074 348 aa6.51□□□□□ -1.37
CAF40YNL288W ECM2P38241 364 aaKnown RBP6.51□□□□□ -1.37
CAF40YNL288W SAH1P39954 449 aaKnown RBP6.51□□□□□ -1.37
CAF40YNL288W MMF1P40185 145 aaKnown RBP6.51□□□□□ -1.37
CAF40YNL288W SPC98P53540 846 aa6.51□□□□□ -1.37
CAF40YNL288W STP1Q00947 519 aa6.51□□□□□ -1.37
CAF40YNL288W CEF1Q03654 590 aaPredicted RBP6.51□□□□□ -1.37
CAF40YNL288W SNU56Q03782 492 aaKnown RBP6.51□□□□□ -1.37
CAF40YNL288W PPM1Q04081 328 aa6.51□□□□□ -1.37
CAF40YNL288W ATP1P07251 545 aaKnown RBP6.5□□□□□ -1.37
CAF40YNL288W RRT12P25381 491 aa6.5□□□□□ -1.37
CAF40YNL288W SYN8P31377 255 aa6.5□□□□□ -1.37
CAF40YNL288W MNR2P35724 969 aa6.5□□□□□ -1.37
CAF40YNL288W EBP2P36049 427 aaKnown RBP6.5□□□□□ -1.37
CAF40YNL288W TFA2P36145 328 aa6.5□□□□□ -1.37
CAF40YNL288W PXL1P36166 706 aa6.5□□□□□ -1.37
CAF40YNL288W STB5P38699 743 aa6.5□□□□□ -1.37
CAF40YNL288W SMC2P38989 1170 aaKnown RBP6.5□□□□□ -1.37
CAF40YNL288W FMP10P40098 244 aa6.5□□□□□ -1.37
CAF40YNL288W SIP5P40210 489 aaKnown RBP6.5□□□□□ -1.37
CAF40YNL288W BFA1P47113 574 aa6.5□□□□□ -1.37
CAF40YNL288W YJR054WP47114 497 aa6.5□□□□□ -1.37
CAF40YNL288W STB4P50104 949 aa6.5□□□□□ -1.37
CAF40YNL288W ALT1P52893 592 aa6.5□□□□□ -1.37
CAF40YNL288W UBP3Q01477 912 aaKnown RBP RIP-Chip data6.5□□□□□ -1.37not detected
CAF40YNL288W YVH1Q02256 364 aaKnown RBP6.5□□□□□ -1.37
CAF40YNL288W PNG1Q02890 363 aa6.5□□□□□ -1.37
CAF40YNL288W SPO71Q03868 1245 aa6.5□□□□□ -1.37
CAF40YNL288W CDD1Q06549 142 aa6.5□□□□□ -1.37
CAF40YNL288W MCA1Q08601 432 aa6.5□□□□□ -1.37
CAF40YNL288W MRN1Q08925 612 aaKnown RBP RIP-Chip data6.5□□□□□ -1.37 RIP-Chip
CAF40YNL288W HMI1Q12039 706 aa6.5□□□□□ -1.37
CAF40YNL288W YPR027CQ12079 277 aa6.5□□□□□ -1.37
CAF40YNL288W REC8Q12188 680 aa6.5□□□□□ -1.37
CAF40YNL288W AI5_BETAQ9ZZX0 354 aa6.5□□□□□ -1.37
CAF40YNL288W AI3P03877 415 aa6.49□□□□□ -1.37
CAF40YNL288W RPS3P05750 240 aaKnown RBP6.49□□□□□ -1.37
CAF40YNL288W CDC33P07260 213 aaKnown RBP6.49□□□□□ -1.37
CAF40YNL288W CIT2P08679 460 aa6.49□□□□□ -1.37
CAF40YNL288W SAC7P17121 654 aa6.49□□□□□ -1.37
CAF40YNL288W KGD2P19262 463 aaPredicted RBP6.49□□□□□ -1.37
CAF40YNL288W RNR1P21524 888 aaKnown RBP6.49□□□□□ -1.37
CAF40YNL288W SPC110P32380 944 aa6.49□□□□□ -1.37
CAF40YNL288W EFB1P32471 206 aaKnown RBP6.49□□□□□ -1.37
CAF40YNL288W RFS1P38234 210 aaKnown RBP6.49□□□□□ -1.37
CAF40YNL288W SHE3P38272 425 aaKnown RBP6.49□□□□□ -1.37
CAF40YNL288W POL31P46957 487 aa6.49□□□□□ -1.37
CAF40YNL288W YJR124CP47159 448 aa6.49□□□□□ -1.37
CAF40YNL288W YNL034WP53963 612 aa6.49□□□□□ -1.37
CAF40YNL288W YNL018CP53976 612 aa6.49□□□□□ -1.37
CAF40YNL288W MRI1Q06489 411 aaKnown RBP6.49□□□□□ -1.37
CAF40YNL288W TSR1Q07381 788 aaKnown RBP6.49□□□□□ -1.37
CAF40YNL288W RRP6Q12149 733 aaKnown RBP6.49□□□□□ -1.37
CAF40YNL288W MNL2Q12205 849 aa6.49□□□□□ -1.37
CAF40YNL288W ECM3Q99252 613 aa6.49□□□□□ -1.37
CAF40YNL288W TPK1P06244 397 aa6.48□□□□□ -1.37
CAF40YNL288W SNF1P06782 633 aaKnown RBP6.48□□□□□ -1.37
CAF40YNL288W CHS1P08004 1131 aa6.48□□□□□ -1.37
CAF40YNL288W DAL2P25335 343 aa6.48□□□□□ -1.37
CAF40YNL288W URK1P27515 501 aa6.48□□□□□ -1.37
CAF40YNL288W CDC11P32458 415 aa6.48□□□□□ -1.37
CAF40YNL288W SFA1P32771 386 aa6.48□□□□□ -1.37
CAF40YNL288W SLA2P33338 968 aa6.48□□□□□ -1.37
CAF40YNL288W CSG2P35206 410 aa6.48□□□□□ -1.37
CAF40YNL288W NOP4P37838 685 aaKnown RBP6.48□□□□□ -1.37
CAF40YNL288W AMN1P38285 549 aaPredicted RBP6.48□□□□□ -1.37
CAF40YNL288W RGD1P38339 666 aa6.48□□□□□ -1.37
CAF40YNL288W RTT107P38850 1070 aa6.48□□□□□ -1.37
CAF40YNL288W NEO1P40527 1151 aa6.48□□□□□ -1.37
CAF40YNL288W LSB6P42951 607 aa6.48□□□□□ -1.37
CAF40YNL288W INP52P50942 1183 aa6.48□□□□□ -1.37
CAF40YNL288W NUT1P53114 1132 aa6.48□□□□□ -1.37
CAF40YNL288W DRN1P53255 507 aaKnown RBP6.48□□□□□ -1.37
CAF40YNL288W CDC55Q00362 526 aa6.48□□□□□ -1.37
CAF40YNL288W UME1Q03010 460 aa6.48□□□□□ -1.37
CAF40YNL288W MZM1Q03429 123 aaPredicted RBP6.48□□□□□ -1.37
CAF40YNL288W BSC2Q05611 235 aa6.48□□□□□ -1.37
CAF40YNL288W NUT2Q06213 157 aa6.48□□□□□ -1.37
CAF40YNL288W NEW1Q08972 1196 aaKnown RBP6.48□□□□□ -1.37
CAF40YNL288W TAF10Q12030 206 aa6.48□□□□□ -1.37
CAF40YNL288W GLO4Q12320 285 aa6.48□□□□□ -1.37
CAF40YNL288W LAA1P39526 2014 aa6.47□□□□□ -1.37
CAF40YNL288W PPR1P07272 904 aaPredicted RBP6.47□□□□□ -1.37
CAF40YNL288W SBP1P10080 294 aaKnown RBP6.47□□□□□ -1.37
CAF40YNL288W TUP1P16649 713 aa6.47□□□□□ -1.37
Retrieved 100 of 5,963 RNA–protein pairs in 11.8 ms