RNA–Protein interactions for RNA: ENST00000514096.5

LIMCH1-219, Transcript of LIM and calponin homology domains 1, humanhuman

TSL 1 (best) BASIC

Gene LIMCH1, Length 3,543 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-219ENST00000514096 CCDC88AQ3V6T2 1871 aa9.56□□□□□ -0.88
LIMCH1-219ENST00000514096 COL4A1P02462 1669 aa9.56□□□□□ -0.88
LIMCH1-219ENST00000514096 UBR2Q8IWV8 1755 aa9.56□□□□□ -0.88
LIMCH1-219ENST00000514096 HSPA6P17066 643 aa9.56□□□□□ -0.88
LIMCH1-219ENST00000514096 RRP1P56182 461 aaKnown RBP9.56□□□□□ -0.88
LIMCH1-219ENST00000514096 PUM3Q15397 648 aaKnown RBP9.56□□□□□ -0.88
LIMCH1-219ENST00000514096 SIPA1L3O60292 1781 aaPredicted RBP9.56□□□□□ -0.88
LIMCH1-219ENST00000514096 MYO1BO43795 1136 aa9.56□□□□□ -0.88
LIMCH1-219ENST00000514096 CCDC102BQ68D86 513 aa9.56□□□□□ -0.88
LIMCH1-219ENST00000514096 BEGAINQ9BUH8 593 aa9.56□□□□□ -0.88
LIMCH1-219ENST00000514096 RRAGDQ9NQL2 400 aaPredicted RBP9.56□□□□□ -0.88
LIMCH1-219ENST00000514096 GNL3LQ9NVN8 582 aaKnown RBP9.56□□□□□ -0.88
LIMCH1-219ENST00000514096 SAP30BPQ9UHR5 308 aaKnown RBP9.56□□□□□ -0.88
LIMCH1-219ENST00000514096 DDX19BQ9UMR2 479 aa9.56□□□□□ -0.88
LIMCH1-219ENST00000514096 LEMD3Q9Y2U8 911 aa9.56□□□□□ -0.88
LIMCH1-219ENST00000514096 RIPOR2Q9Y4F9 1068 aa9.56□□□□□ -0.88
LIMCH1-219ENST00000514096 RTL9Q8NET4 1388 aa9.56□□□□□ -0.88
LIMCH1-219ENST00000514096 ZBTB7BO15156 539 aaPredicted RBP9.55□□□□□ -0.88
LIMCH1-219ENST00000514096 PODNQ7Z5L7 613 aa9.55□□□□□ -0.88
LIMCH1-219ENST00000514096 ADARB2Q9NS39 739 aaKnown RBP9.55□□□□□ -0.88
LIMCH1-219ENST00000514096 GOLIM4O00461 696 aa9.55□□□□□ -0.88
LIMCH1-219ENST00000514096 PTMAP06454 111 aaKnown RBP9.55□□□□□ -0.88
LIMCH1-219ENST00000514096 PLCD4Q9BRC7 762 aa9.55□□□□□ -0.88
LIMCH1-219ENST00000514096 TMEM39BQ9GZU3 492 aa9.55□□□□□ -0.88
LIMCH1-219ENST00000514096 TRIM6-TRIM34B2RNG4 842 aa9.55□□□□□ -0.88
LIMCH1-219ENST00000514096 WNT10BO00744 389 aa9.55□□□□□ -0.88
LIMCH1-219ENST00000514096 ZNF157P51786 506 aaPredicted RBP9.55□□□□□ -0.88
LIMCH1-219ENST00000514096 CCDC158Q5M9N0 1113 aa9.55□□□□□ -0.88
LIMCH1-219ENST00000514096 PNMA8AQ86V59 439 aaPredicted RBP9.55□□□□□ -0.88
LIMCH1-219ENST00000514096 PDCL3Q9H2J4 239 aa9.55□□□□□ -0.88
LIMCH1-219ENST00000514096 AATFQ9NY61 560 aaKnown RBP eCLIP9.55□□□□□ -0.88
LIMCH1-219ENST00000514096 PRDM4Q9UKN5 801 aa9.55□□□□□ -0.88
LIMCH1-219ENST00000514096 ZBTB22O15209 634 aa9.54□□□□□ -0.88
LIMCH1-219ENST00000514096 LDHBP07195 334 aaKnown RBP9.54□□□□□ -0.88
LIMCH1-219ENST00000514096 IL15P40933 162 aaPredicted RBP9.54□□□□□ -0.88
LIMCH1-219ENST00000514096 ATP2B2Q01814 1243 aa9.54□□□□□ -0.88
LIMCH1-219ENST00000514096 INTS3Q68E01 1043 aaKnown RBP9.54□□□□□ -0.88
LIMCH1-219ENST00000514096 CEP85Q6P2H3 762 aa9.54□□□□□ -0.88
LIMCH1-219ENST00000514096 ATG9AQ7Z3C6 839 aa9.54□□□□□ -0.88
LIMCH1-219ENST00000514096 CLASRPQ8N2M8 674 aaKnown RBP9.54□□□□□ -0.88
LIMCH1-219ENST00000514096 OTUD7AQ8TE49 926 aaPredicted RBP9.54□□□□□ -0.88
LIMCH1-219ENST00000514096 ZIC5Q96T25 663 aa9.54□□□□□ -0.88
LIMCH1-219ENST00000514096 COA1Q9GZY4 146 aa9.54□□□□□ -0.88
LIMCH1-219ENST00000514096 ANTXR1Q9H6X2 564 aa9.54□□□□□ -0.88
LIMCH1-219ENST00000514096 FRMD4AQ9P2Q2 1039 aaPredicted RBP9.54□□□□□ -0.88
LIMCH1-219ENST00000514096 RILPL2Q969X0 211 aa9.54□□□□□ -0.88
LIMCH1-219ENST00000514096 ANKRD31Q8N7Z5 1873 aa9.54□□□□□ -0.88
LIMCH1-219ENST00000514096 RGPD3A6NKT7 1758 aaPredicted RBP9.54□□□□□ -0.88
LIMCH1-219ENST00000514096 RGPD4Q7Z3J3 1758 aa9.54□□□□□ -0.88
LIMCH1-219ENST00000514096 ZFP91-CNTFA0A0A6YYC7 529 aaPredicted RBP9.53□□□□□ -0.88
LIMCH1-219ENST00000514096 HMMRO75330 724 aa9.53□□□□□ -0.88
LIMCH1-219ENST00000514096 ZAP70P43403 619 aa9.53□□□□□ -0.88
LIMCH1-219ENST00000514096 RASGRF1Q13972 1273 aa9.53□□□□□ -0.88
LIMCH1-219ENST00000514096 ZYXQ15942 572 aaKnown RBP9.53□□□□□ -0.88
LIMCH1-219ENST00000514096 LPIN2Q92539 896 aa9.53□□□□□ -0.88
LIMCH1-219ENST00000514096 EAF2Q96CJ1 260 aaPredicted RBP9.53□□□□□ -0.88
LIMCH1-219ENST00000514096 TMOD2Q9NZR1 351 aa9.53□□□□□ -0.88
LIMCH1-219ENST00000514096 PCDHB15Q9Y5E8 787 aa9.53□□□□□ -0.88
LIMCH1-219ENST00000514096 CGNQ9P2M7 1197 aaKnown RBP9.53□□□□□ -0.88
LIMCH1-219ENST00000514096 NBPF12Q5TAG4 269 aaPredicted RBP9.53□□□□□ -0.88
LIMCH1-219ENST00000514096 LDHDQ86WU2 507 aa9.53□□□□□ -0.88
LIMCH1-219ENST00000514096 TOMM22Q9NS69 142 aa9.53□□□□□ -0.88
LIMCH1-219ENST00000514096 TRPA1O75762 1119 aa9.52□□□□□ -0.88
LIMCH1-219ENST00000514096 CT47B1P0C2W7 299 aaPredicted RBP9.52□□□□□ -0.88
LIMCH1-219ENST00000514096 RASA3Q14644 834 aa9.52□□□□□ -0.88
LIMCH1-219ENST00000514096 DEFB115Q30KQ5 88 aa9.52□□□□□ -0.88
LIMCH1-219ENST00000514096 DACT2Q5SW24 774 aa9.52□□□□□ -0.88
LIMCH1-219ENST00000514096 CDC37L1Q7L3B6 337 aa9.52□□□□□ -0.88
LIMCH1-219ENST00000514096 DEFB129Q9H1M3 183 aa9.52□□□□□ -0.88
LIMCH1-219ENST00000514096 USP40Q9NVE5 1235 aa9.52□□□□□ -0.88
LIMCH1-219ENST00000514096 COL11A2P13942 1736 aaPredicted RBP9.52□□□□□ -0.88
LIMCH1-219ENST00000514096 MROH5Q6ZUA9 1318 aa9.52□□□□□ -0.89
LIMCH1-219ENST00000514096 COL4A5P29400 1685 aa9.52□□□□□ -0.89
LIMCH1-219ENST00000514096 ATP8B2P98198 1209 aa9.52□□□□□ -0.89
LIMCH1-219ENST00000514096 UBE4AQ14139 1066 aa9.52□□□□□ -0.89
LIMCH1-219ENST00000514096 TMC4Q7Z404 712 aa9.52□□□□□ -0.89
LIMCH1-219ENST00000514096 DDRGK1Q96HY6 314 aa9.52□□□□□ -0.89
LIMCH1-219ENST00000514096 CRKP46108 304 aa9.52□□□□□ -0.89
LIMCH1-219ENST00000514096 MAPKAPK5Q8IW41 473 aa9.52□□□□□ -0.89
LIMCH1-219ENST00000514096 RHPN1Q8TCX5 695 aa9.52□□□□□ -0.89
LIMCH1-219ENST00000514096 NF2P35240 595 aa9.51□□□□□ -0.89
LIMCH1-219ENST00000514096 APLP1P51693 650 aa9.51□□□□□ -0.89
LIMCH1-219ENST00000514096 NFIAQ12857 509 aa9.51□□□□□ -0.89
LIMCH1-219ENST00000514096 PPP4R3BQ5MIZ7 849 aa9.51□□□□□ -0.89
LIMCH1-219ENST00000514096 TRIM44Q96DX7 344 aaPredicted RBP9.51□□□□□ -0.89
LIMCH1-219ENST00000514096 CLMNQ96JQ2 1002 aa9.51□□□□□ -0.89
LIMCH1-219ENST00000514096 NOL10Q9BSC4 688 aaKnown RBP9.51□□□□□ -0.89
LIMCH1-219ENST00000514096 TRIM34Q9BYJ4 488 aa9.51□□□□□ -0.89
LIMCH1-219ENST00000514096 CHD4Q14839 1912 aa9.51□□□□□ -0.89
LIMCH1-219ENST00000514096 ADAMTS7Q9UKP4 1686 aa9.51□□□□□ -0.89
LIMCH1-219ENST00000514096 MS4A1P11836 297 aa9.51□□□□□ -0.89
LIMCH1-219ENST00000514096 TNNT3P45378 269 aaPredicted RBP9.51□□□□□ -0.89
LIMCH1-219ENST00000514096 RFX5P48382 616 aaPredicted RBP9.51□□□□□ -0.89
LIMCH1-219ENST00000514096 TNNI3KQ59H18 835 aa9.51□□□□□ -0.89
LIMCH1-219ENST00000514096 C2orf69Q8N8R5 385 aa9.51□□□□□ -0.89
LIMCH1-219ENST00000514096 TEKT1Q969V4 418 aa9.51□□□□□ -0.89
LIMCH1-219ENST00000514096 FPGT-TNNI3KV9GXZ4 949 aa9.51□□□□□ -0.89
LIMCH1-219ENST00000514096 TMEM88BA6NKF7 163 aa9.51□□□□□ -0.89
LIMCH1-219ENST00000514096 CYP7A1P22680 504 aa9.51□□□□□ -0.89
LIMCH1-219ENST00000514096 RBM25P49756 843 aaKnown RBP9.51□□□□□ -0.89
Retrieved 100 of 20,778 RNA–protein pairs in 23.1 ms