RNA–Protein interactions for RNA: ENST00000353317.9

TRIM55-204, Transcript of tripartite motif containing 55, humanhuman

TSL 1 (best) BASIC

Gene TRIM55, Length 2,624 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM55-204ENST00000353317 ST3GAL1Q11201 340 aa10.16□□□□□ -0.78
TRIM55-204ENST00000353317 NECTIN1Q15223 517 aa10.16□□□□□ -0.78
TRIM55-204ENST00000353317 SLC15A2Q16348 729 aa10.16□□□□□ -0.78
TRIM55-204ENST00000353317 MAP4K1Q92918 833 aa10.16□□□□□ -0.78
TRIM55-204ENST00000353317 CCDC171Q6TFL3 1326 aa10.16□□□□□ -0.78
TRIM55-204ENST00000353317 M0R2C6 588 aa10.16□□□□□ -0.78
TRIM55-204ENST00000353317 MMP10P09238 476 aa10.16□□□□□ -0.78
TRIM55-204ENST00000353317 PRPF40BQ6NWY9 871 aaKnown RBP10.16□□□□□ -0.78
TRIM55-204ENST00000353317 OLFM4Q6UX06 510 aa10.16□□□□□ -0.78
TRIM55-204ENST00000353317 MYRIPQ8NFW9 859 aa10.16□□□□□ -0.78
TRIM55-204ENST00000353317 ZNF512BQ96KM6 892 aaPredicted RBP10.16□□□□□ -0.78
TRIM55-204ENST00000353317 FAM84BQ96KN1 310 aaPredicted RBP10.16□□□□□ -0.78
TRIM55-204ENST00000353317 JAKMIP1Q96N16 626 aaKnown RBP10.16□□□□□ -0.78
TRIM55-204ENST00000353317 IRS2Q9Y4H2 1338 aa10.16□□□□□ -0.78
TRIM55-204ENST00000353317 DOCK2Q92608 1830 aa10.15□□□□□ -0.78
TRIM55-204ENST00000353317 AP5Z1O43299 807 aa10.15□□□□□ -0.78
TRIM55-204ENST00000353317 SLC5A1P13866 664 aa10.15□□□□□ -0.78
TRIM55-204ENST00000353317 ZMYM1Q5SVZ6 1142 aa10.15□□□□□ -0.78
TRIM55-204ENST00000353317 ARID3AQ99856 593 aa10.15□□□□□ -0.78
TRIM55-204ENST00000353317 PUS7LQ9H0K6 701 aaKnown RBP10.15□□□□□ -0.78
TRIM55-204ENST00000353317 ZSWIM6Q9HCJ5 1215 aa10.15□□□□□ -0.78
TRIM55-204ENST00000353317 PDRG1Q9NUG6 133 aa10.15□□□□□ -0.78
TRIM55-204ENST00000353317 COL11A2P13942 1736 aaPredicted RBP10.15□□□□□ -0.78
TRIM55-204ENST00000353317 MAST3O60307 1309 aa10.15□□□□□ -0.79
TRIM55-204ENST00000353317 KLRG2A4D1S0 409 aaPredicted RBP10.15□□□□□ -0.79
TRIM55-204ENST00000353317 PLCB2Q00722 1185 aa10.15□□□□□ -0.79
TRIM55-204ENST00000353317 ME3Q16798 604 aa10.15□□□□□ -0.79
TRIM55-204ENST00000353317 WWC3Q9ULE0 1092 aa10.15□□□□□ -0.79
TRIM55-204ENST00000353317 RBM8AQ9Y5S9 174 aaKnown RBP10.15□□□□□ -0.79
TRIM55-204ENST00000353317 CACNA1SQ13698 1873 aa10.15□□□□□ -0.79
TRIM55-204ENST00000353317 RNF113AO15541 343 aaKnown RBP10.14□□□□□ -0.79
TRIM55-204ENST00000353317 GRAPQ13588 217 aa10.14□□□□□ -0.79
TRIM55-204ENST00000353317 MTERF4Q7Z6M4 381 aaKnown RBP10.14□□□□□ -0.79
TRIM55-204ENST00000353317 NLGN1Q8N2Q7 840 aa10.14□□□□□ -0.79
TRIM55-204ENST00000353317 SPATA5Q8NB90 893 aa10.14□□□□□ -0.79
TRIM55-204ENST00000353317 GRAPLQ8TC17 118 aaPredicted RBP10.14□□□□□ -0.79
TRIM55-204ENST00000353317 RUFY2Q8WXA3 655 aa10.14□□□□□ -0.79
TRIM55-204ENST00000353317 ZNF804BA4D1E1 1349 aa10.14□□□□□ -0.79
TRIM55-204ENST00000353317 MCMDC2Q4G0Z9 681 aa10.14□□□□□ -0.79
TRIM55-204ENST00000353317 NECAB1Q8N987 351 aa10.14□□□□□ -0.79
TRIM55-204ENST00000353317 TSC1Q92574 1164 aa10.14□□□□□ -0.79
TRIM55-204ENST00000353317 KCNB2Q92953 911 aa10.14□□□□□ -0.79
TRIM55-204ENST00000353317 TM6SF1Q9BZW5 370 aa10.14□□□□□ -0.79
TRIM55-204ENST00000353317 CYP46A1Q9Y6A2 500 aa10.14□□□□□ -0.79
TRIM55-204ENST00000353317 CHD4Q14839 1912 aa10.13□□□□□ -0.79
TRIM55-204ENST00000353317 VPS37CA5D8V6 355 aaPredicted RBP10.13□□□□□ -0.79
TRIM55-204ENST00000353317 HIP1O00291 1037 aa10.13□□□□□ -0.79
TRIM55-204ENST00000353317 UBE4AQ14139 1066 aa10.13□□□□□ -0.79
TRIM55-204ENST00000353317 PRIMPOLQ96LW4 560 aa10.13□□□□□ -0.79
TRIM55-204ENST00000353317 SH2B1Q9NRF2 756 aaPredicted RBP10.13□□□□□ -0.79
TRIM55-204ENST00000353317 SPTLC3Q9NUV7 552 aa10.13□□□□□ -0.79
TRIM55-204ENST00000353317 MYH13Q9UKX3 1938 aa10.13□□□□□ -0.79
TRIM55-204ENST00000353317 TCRBV5S4A2TA0A5A2 114 aa10.13□□□□□ -0.79
TRIM55-204ENST00000353317 ST5P78524 1137 aa10.13□□□□□ -0.79
TRIM55-204ENST00000353317 GPSM2P81274 684 aa10.13□□□□□ -0.79
TRIM55-204ENST00000353317 CREB3L3Q68CJ9 461 aa10.13□□□□□ -0.79
TRIM55-204ENST00000353317 ZNF384Q8TF68 577 aa10.13□□□□□ -0.79
TRIM55-204ENST00000353317 ZSCAN31Q96LW9 406 aaPredicted RBP10.13□□□□□ -0.79
TRIM55-204ENST00000353317 TPCN1Q9ULQ1 816 aa10.13□□□□□ -0.79
TRIM55-204ENST00000353317 JAG2Q9Y219 1238 aa10.13□□□□□ -0.79
TRIM55-204ENST00000353317 LAMA4Q16363 1823 aa10.13□□□□□ -0.79
TRIM55-204ENST00000353317 RFX7Q2KHR2 1363 aa10.12□□□□□ -0.79
TRIM55-204ENST00000353317 SLC27A2O14975 620 aa10.12□□□□□ -0.79
TRIM55-204ENST00000353317 IDH1O75874 414 aaKnown RBP10.12□□□□□ -0.79
TRIM55-204ENST00000353317 HOXA10P31260 410 aaPredicted RBP10.12□□□□□ -0.79
TRIM55-204ENST00000353317 SLC9C2Q5TAH2 1124 aa10.12□□□□□ -0.79
TRIM55-204ENST00000353317 FBXO33Q7Z6M2 555 aa10.12□□□□□ -0.79
TRIM55-204ENST00000353317 KCNF1Q9H3M0 494 aa10.12□□□□□ -0.79
TRIM55-204ENST00000353317 SRGNP10124 158 aa10.12□□□□□ -0.79
TRIM55-204ENST00000353317 HSPD1P10809 573 aaKnown RBP10.12□□□□□ -0.79
TRIM55-204ENST00000353317 GTF2F1P35269 517 aaKnown RBP eCLIP10.12□□□□□ -0.79
TRIM55-204ENST00000353317 ADD2P35612 726 aa10.12□□□□□ -0.79
TRIM55-204ENST00000353317 HMGN5P82970 282 aaKnown RBP10.12□□□□□ -0.79
TRIM55-204ENST00000353317 TTLL5Q6EMB2 1281 aa10.12□□□□□ -0.79
TRIM55-204ENST00000353317 ADGRA1Q86SQ6 560 aa10.12□□□□□ -0.79
TRIM55-204ENST00000353317 TTC6Q86TZ1 520 aa10.12□□□□□ -0.79
TRIM55-204ENST00000353317 ZNF710Q8N1W2 664 aa10.12□□□□□ -0.79
TRIM55-204ENST00000353317 RPGRQ92834 1020 aaKnown RBP10.12□□□□□ -0.79
TRIM55-204ENST00000353317 LTBP1Q14766 1721 aa10.12□□□□□ -0.79
TRIM55-204ENST00000353317 QSER1Q2KHR3 1735 aa10.11□□□□□ -0.79
TRIM55-204ENST00000353317 CYP21A2P08686 494 aa10.11□□□□□ -0.79
TRIM55-204ENST00000353317 UQCRFS1P1P0C7P4 283 aa10.11□□□□□ -0.79
TRIM55-204ENST00000353317 ZKSCAN1P17029 563 aaPredicted RBP10.11□□□□□ -0.79
TRIM55-204ENST00000353317 FAM173BQ6P4H8 233 aa10.11□□□□□ -0.79
TRIM55-204ENST00000353317 CDC37L1Q7L3B6 337 aa10.11□□□□□ -0.79
TRIM55-204ENST00000353317 KLHL34Q8N239 644 aa10.11□□□□□ -0.79
TRIM55-204ENST00000353317 NKX2-3Q8TAU0 364 aa10.11□□□□□ -0.79
TRIM55-204ENST00000353317 BRIP1Q9BX63 1249 aa10.11□□□□□ -0.79
TRIM55-204ENST00000353317 HELLSQ9NRZ9 838 aa10.11□□□□□ -0.79
TRIM55-204ENST00000353317 ZNF532Q9HCE3 1301 aa10.11□□□□□ -0.79
TRIM55-204ENST00000353317 SLX4Q8IY92 1834 aa10.11□□□□□ -0.79
TRIM55-204ENST00000353317 PDE6AP16499 860 aa10.11□□□□□ -0.79
TRIM55-204ENST00000353317 WASHC4Q2M389 1173 aa10.11□□□□□ -0.79
TRIM55-204ENST00000353317 LARP1BQ659C4 914 aaKnown RBP10.11□□□□□ -0.79
TRIM55-204ENST00000353317 STOX1Q6ZVD7 989 aa10.11□□□□□ -0.79
TRIM55-204ENST00000353317 FERMT3Q86UX7 667 aa10.11□□□□□ -0.79
TRIM55-204ENST00000353317 FLAD1Q8NFF5 587 aa10.11□□□□□ -0.79
TRIM55-204ENST00000353317 KIAA1524Q8TCG1 905 aa10.11□□□□□ -0.79
TRIM55-204ENST00000353317 TCEANC2Q96MN5 208 aa10.11□□□□□ -0.79
TRIM55-204ENST00000353317 POLLQ9UGP5 575 aa10.11□□□□□ -0.79
Retrieved 100 of 20,778 RNA–protein pairs in 10.2 ms