RNA–Protein interactions for RNA: YOL038W

PRE6, Transcript of Alpha 4 subunit of the 20S proteasome, yeast

Gene PRE6, Length 765 nt, Biotype protein coding.

RNA		Protein				Prediction (catRAPID)		Interaction (RIP-Chip)
Gene	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	Detected Interaction
PRE6	YOL038W	XRS2	P33301	854 aa		11.28	□□□□□ -0.6
PRE6	YOL038W	NOP4	P37838	685 aa	Known RBP	11.28	□□□□□ -0.6
PRE6	YOL038W	YBL036C	P38197	257 aa		11.28	□□□□□ -0.6
PRE6	YOL038W	RRM3	P38766	723 aa		11.28	□□□□□ -0.6
PRE6	YOL038W	GPD1	Q00055	391 aa	Known RBP	11.28	□□□□□ -0.6
PRE6	YOL038W	SSL2	Q00578	843 aa		11.28	□□□□□ -0.6
PRE6	YOL038W	PIR3	Q03180	325 aa		11.28	□□□□□ -0.6
PRE6	YOL038W	MPD2	Q99316	277 aa		11.28	□□□□□ -0.6
PRE6	YOL038W	NUM1	Q00402	2748 aa		11.27	□□□□□ -0.61
PRE6	YOL038W	MIP6	P38760	659 aa	Known RBP	11.27	□□□□□ -0.61
PRE6	YOL038W	TAD1	P53065	400 aa		11.27	□□□□□ -0.61
PRE6	YOL038W	PUS2	P53167	370 aa		11.27	□□□□□ -0.61
PRE6	YOL038W	CAF120	P53836	1060 aa		11.27	□□□□□ -0.61
PRE6	YOL038W	YNL144C	P53907	740 aa		11.27	□□□□□ -0.61
PRE6	YOL038W	ARO80	Q04052	950 aa		11.27	□□□□□ -0.61
PRE6	YOL038W	SEG1	Q04279	960 aa		11.27	□□□□□ -0.61
PRE6	YOL038W	YOL098C	Q12496	1037 aa		11.27	□□□□□ -0.61
PRE6	YOL038W	RPS6A	P0CX37	236 aa	Known RBP	11.26	□□□□□ -0.61
PRE6	YOL038W	RPS6B	P0CX38	236 aa	Predicted RBP	11.26	□□□□□ -0.61
PRE6	YOL038W	TUP1	P16649	713 aa		11.26	□□□□□ -0.61
PRE6	YOL038W	MRP4	P32902	394 aa		11.26	□□□□□ -0.61
PRE6	YOL038W	SPT23	P35210	1082 aa		11.26	□□□□□ -0.61
PRE6	YOL038W	TRZ1	P36159	838 aa	Predicted RBP	11.26	□□□□□ -0.61
PRE6	YOL038W	YMC2	P38087	329 aa		11.26	□□□□□ -0.61
PRE6	YOL038W	CBR1	P38626	284 aa	Known RBP	11.26	□□□□□ -0.61
PRE6	YOL038W	PRK1	P40494	810 aa		11.26	□□□□□ -0.61
PRE6	YOL038W	ERG10	P41338	398 aa	Known RBP	11.26	□□□□□ -0.61
PRE6	YOL038W	PHO86	P46956	311 aa		11.26	□□□□□ -0.61
PRE6	YOL038W	YML082W	Q04533	649 aa	Known RBP	11.26	□□□□□ -0.61
PRE6	YOL038W	YML053C	Q04978	212 aa		11.26	□□□□□ -0.61
PRE6	YOL038W	PPR1	P07272	904 aa	Predicted RBP	11.25	□□□□□ -0.61
PRE6	YOL038W	HOM2	P13663	365 aa	Known RBP	11.25	□□□□□ -0.61
PRE6	YOL038W	KIN3	P22209	435 aa		11.25	□□□□□ -0.61
PRE6	YOL038W	GPI10	P30777	616 aa		11.25	□□□□□ -0.61
PRE6	YOL038W	HFM1	P51979	1187 aa		11.25	□□□□□ -0.61
PRE6	YOL038W	COQ6	P53318	479 aa		11.25	□□□□□ -0.61
PRE6	YOL038W	SPG3	Q04398	127 aa	Predicted RBP	11.25	□□□□□ -0.61
PRE6	YOL038W	YPR084W	Q06821	456 aa		11.25	□□□□□ -0.61
PRE6	YOL038W	MDM38	Q08179	573 aa		11.25	□□□□□ -0.61
PRE6	YOL038W	ATE1	P16639	503 aa		11.24	□□□□□ -0.61
PRE6	YOL038W	RGR1	P19263	1082 aa		11.24	□□□□□ -0.61
PRE6	YOL038W	YBR053C	P38235	358 aa		11.24	□□□□□ -0.61
PRE6	YOL038W	YIR007W	P40566	764 aa		11.24	□□□□□ -0.61
PRE6	YOL038W	NMA2	P53204	395 aa		11.24	□□□□□ -0.61
PRE6	YOL038W	NIS1	P53939	407 aa		11.24	□□□□□ -0.61
PRE6	YOL038W	MFB1	Q04922	465 aa		11.24	□□□□□ -0.61
PRE6	YOL038W	ETT1	Q08421	412 aa	Known RBP	11.24	□□□□□ -0.61
PRE6	YOL038W	CET1	O13297	549 aa	Predicted RBP	11.23	□□□□□ -0.61
PRE6	YOL038W	RPN12	P32496	274 aa		11.23	□□□□□ -0.61
PRE6	YOL038W	ECM13	P38195	257 aa		11.23	□□□□□ -0.61
PRE6	YOL038W	SDS3	P40505	327 aa		11.23	□□□□□ -0.61
PRE6	YOL038W	ESBP6	P53918	673 aa		11.23	□□□□□ -0.61
PRE6	YOL038W	FLC1	Q08967	793 aa		11.23	□□□□□ -0.61
PRE6	YOL038W	YER152C	P10356	443 aa		11.22	□□□□□ -0.61
PRE6	YOL038W	GYP6	P32806	458 aa		11.22	□□□□□ -0.61
PRE6	YOL038W	ATG12	P38316	186 aa		11.22	□□□□□ -0.61
PRE6	YOL038W	QNS1	P38795	714 aa	Known RBP	11.22	□□□□□ -0.61
PRE6	YOL038W	RSM25	P40496	264 aa		11.22	□□□□□ -0.61
PRE6	YOL038W	STU2	P46675	888 aa		11.22	□□□□□ -0.61
PRE6	YOL038W	VEL1	P53058	206 aa		11.22	□□□□□ -0.61
PRE6	YOL038W	IMP4	P53941	290 aa	Known RBP	11.22	□□□□□ -0.61
PRE6	YOL038W	EMP46	Q12396	444 aa		11.22	□□□□□ -0.61
PRE6	YOL038W	CDC33	P07260	213 aa	Known RBP	11.21	□□□□□ -0.61
PRE6	YOL038W	CAP1	P28495	268 aa	Known RBP	11.21	□□□□□ -0.61
PRE6	YOL038W	MSP1	P28737	362 aa		11.21	□□□□□ -0.61
PRE6	YOL038W	FMO1	P38866	432 aa		11.21	□□□□□ -0.61
PRE6	YOL038W	EAF7	P53911	425 aa	Known RBP	11.21	□□□□□ -0.61
PRE6	YOL038W	TOF2	Q02208	771 aa		11.21	□□□□□ -0.61
PRE6	YOL038W	YPL014W	Q02606	381 aa		11.21	□□□□□ -0.61
PRE6	YOL038W	JIP3	O13555	125 aa		11.2	□□□□□ -0.62
PRE6	YOL038W	BI2	P03873	423 aa		11.2	□□□□□ -0.62
PRE6	YOL038W	BI4	P03879	638 aa		11.2	□□□□□ -0.62
PRE6	YOL038W	RPL40A	P0CH08	128 aa	Known RBP	11.2	□□□□□ -0.62
PRE6	YOL038W	RPL40B	P0CH09	128 aa	Known RBP	11.2	□□□□□ -0.62
PRE6	YOL038W	FPR1	P20081	114 aa	Known RBP	11.2	□□□□□ -0.62
PRE6	YOL038W	SEC65	P29478	273 aa		11.2	□□□□□ -0.62
PRE6	YOL038W	SPT8	P38915	602 aa		11.2	□□□□□ -0.62
PRE6	YOL038W	HEM14	P40012	539 aa		11.2	□□□□□ -0.62
PRE6	YOL038W	UFE1	P41834	346 aa		11.2	□□□□□ -0.62
PRE6	YOL038W	VTC4	P47075	721 aa		11.2	□□□□□ -0.62
PRE6	YOL038W	TAF9	Q05027	157 aa		11.2	□□□□□ -0.62
PRE6	YOL038W	ECM38	Q05902	660 aa	Predicted RBP	11.2	□□□□□ -0.62
PRE6	YOL038W	BI3	Q9ZZW7	517 aa		11.2	□□□□□ -0.62
PRE6	YOL038W	RPS9A	O13516	197 aa	Known RBP	11.19	□□□□□ -0.62
PRE6	YOL038W	ENO2	P00925	437 aa	Known RBP	11.19	□□□□□ -0.62
PRE6	YOL038W	HSF1	P10961	833 aa		11.19	□□□□□ -0.62
PRE6	YOL038W	HSP78	P33416	811 aa		11.19	□□□□□ -0.62
PRE6	YOL038W	EXO5	P38289	585 aa		11.19	□□□□□ -0.62
PRE6	YOL038W	SSP1	P38871	571 aa		11.19	□□□□□ -0.62
PRE6	YOL038W	GIP4	P39732	760 aa		11.19	□□□□□ -0.62
PRE6	YOL038W	RSM26	P47141	266 aa		11.19	□□□□□ -0.62
PRE6	YOL038W	PIN2	Q12057	282 aa		11.19	□□□□□ -0.62
PRE6	YOL038W	PUF2	Q12221	1075 aa	Known RBP RIP-Chip data	11.19	□□□□□ -0.62	not detected
PRE6	YOL038W	RPS3	P05750	240 aa	Known RBP	11.18	□□□□□ -0.62
PRE6	YOL038W	EST1	P17214	699 aa	Predicted RBP	11.18	□□□□□ -0.62
PRE6	YOL038W	SMC1	P32908	1225 aa		11.18	□□□□□ -0.62
PRE6	YOL038W	NIP100	P33420	868 aa		11.18	□□□□□ -0.62
PRE6	YOL038W	NMD3	P38861	518 aa	Known RBP	11.18	□□□□□ -0.62
PRE6	YOL038W	YER189W	P40104	122 aa		11.18	□□□□□ -0.62
PRE6	YOL038W	PSY2	P40164	858 aa		11.18	□□□□□ -0.62

Retrieved 100 of 5,963 RNA–protein pairs in 68.1 ms