RNA–Protein interactions for RNA: YLL039C

UBI4, Transcript of Ubiquitin, yeast

Gene UBI4, Length 1,146 nt, Biotype protein coding.

RNA		Protein				Prediction (catRAPID)		Interaction (RIP-Chip)
Gene	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	Detected Interaction
UBI4	YLL039C	YIG1	Q08956	461 aa		4.9	□□□□□ -1.63
UBI4	YLL039C	HIP1	P06775	603 aa		4.89	□□□□□ -1.63
UBI4	YLL039C	SWI6	P09959	803 aa		4.89	□□□□□ -1.63
UBI4	YLL039C	PHO8	P11491	566 aa		4.89	□□□□□ -1.63
UBI4	YLL039C	SWI3	P32591	825 aa		4.89	□□□□□ -1.63
UBI4	YLL039C	BUD2	P33314	1104 aa		4.89	□□□□□ -1.63
UBI4	YLL039C	YEL1	P34225	687 aa		4.89	□□□□□ -1.63
UBI4	YLL039C	MPE1	P35728	441 aa	Known RBP	4.89	□□□□□ -1.63
UBI4	YLL039C	DRE2	P36152	348 aa		4.89	□□□□□ -1.63
UBI4	YLL039C	MRX3	P38172	270 aa		4.89	□□□□□ -1.63
UBI4	YLL039C	NPR3	P38742	1146 aa		4.89	□□□□□ -1.63
UBI4	YLL039C	YHL008C	P38750	627 aa		4.89	□□□□□ -1.63
UBI4	YLL039C	CEP3	P40969	608 aa		4.89	□□□□□ -1.63
UBI4	YLL039C	OYE3	P41816	400 aa	Predicted RBP	4.89	□□□□□ -1.63
UBI4	YLL039C	CCM1	P48237	864 aa	Predicted RBP	4.89	□□□□□ -1.63
UBI4	YLL039C	YGR237C	P50089	785 aa		4.89	□□□□□ -1.63
UBI4	YLL039C	TAN1	P53072	289 aa	Predicted RBP	4.89	□□□□□ -1.63
UBI4	YLL039C	SHE10	P53075	577 aa		4.89	□□□□□ -1.63
UBI4	YLL039C	VID30	P53076	958 aa		4.89	□□□□□ -1.63
UBI4	YLL039C	MNP1	P53163	194 aa	Predicted RBP	4.89	□□□□□ -1.63
UBI4	YLL039C	VTC3	Q02725	835 aa		4.89	□□□□□ -1.63
UBI4	YLL039C	ECM7	Q06200	448 aa		4.89	□□□□□ -1.63
UBI4	YLL039C	SPP382	Q06411	708 aa	Predicted RBP	4.89	□□□□□ -1.63
UBI4	YLL039C	AFT2	Q08957	416 aa		4.89	□□□□□ -1.63
UBI4	YLL039C	CDC53	Q12018	815 aa	Known RBP	4.89	□□□□□ -1.63
UBI4	YLL039C	CMR1	Q12510	522 aa	Known RBP	4.89	□□□□□ -1.63
UBI4	YLL039C	PCD1	Q12524	340 aa		4.89	□□□□□ -1.63
UBI4	YLL039C	HTS1	P07263	546 aa	Known RBP	4.88	□□□□□ -1.63
UBI4	YLL039C	OM45	P16547	393 aa		4.88	□□□□□ -1.63
UBI4	YLL039C	ADE2	P21264	571 aa	Known RBP	4.88	□□□□□ -1.63
UBI4	YLL039C	NPR1	P22211	790 aa		4.88	□□□□□ -1.63
UBI4	YLL039C	SSD1	P24276	1250 aa	Known RBP RIP-Chip data	4.88	□□□□□ -1.63	not detected
UBI4	YLL039C	CAD1	P24813	409 aa	Known RBP	4.88	□□□□□ -1.63
UBI4	YLL039C	GSY2	P27472	705 aa		4.88	□□□□□ -1.63
UBI4	YLL039C	SKG6	P32900	734 aa	Predicted RBP	4.88	□□□□□ -1.63
UBI4	YLL039C	HSP78	P33416	811 aa		4.88	□□□□□ -1.63
UBI4	YLL039C	VID24	P38263	362 aa		4.88	□□□□□ -1.63
UBI4	YLL039C	YAP1801	P38856	637 aa		4.88	□□□□□ -1.63
UBI4	YLL039C	JHD1	P40034	492 aa		4.88	□□□□□ -1.63
UBI4	YLL039C	RAD26	P40352	1085 aa		4.88	□□□□□ -1.63
UBI4	YLL039C	GCV2	P49095	1034 aa		4.88	□□□□□ -1.63
UBI4	YLL039C	CUL3	P53202	744 aa		4.88	□□□□□ -1.63
UBI4	YLL039C	TPO2	P53283	614 aa		4.88	□□□□□ -1.63
UBI4	YLL039C	YNL134C	P53912	376 aa	Known RBP	4.88	□□□□□ -1.63
UBI4	YLL039C	RSC4	Q02206	625 aa		4.88	□□□□□ -1.63
UBI4	YLL039C	YOL075C	Q08234	1294 aa		4.88	□□□□□ -1.63
UBI4	YLL039C	YPL216W	Q08964	1102 aa		4.88	□□□□□ -1.63
UBI4	YLL039C	YLL054C	Q12244	843 aa		4.88	□□□□□ -1.63
UBI4	YLL039C	MED1	Q12321	566 aa		4.88	□□□□□ -1.63
UBI4	YLL039C	COX4	P04037	155 aa		4.87	□□□□□ -1.63
UBI4	YLL039C	GLN3	P18494	730 aa		4.87	□□□□□ -1.63
UBI4	YLL039C	PSO2	P30620	661 aa		4.87	□□□□□ -1.63
UBI4	YLL039C	DEP1	P31385	405 aa		4.87	□□□□□ -1.63
UBI4	YLL039C	MIC60	P36112	540 aa		4.87	□□□□□ -1.63
UBI4	YLL039C	ADE17	P38009	592 aa	Known RBP	4.87	□□□□□ -1.63
UBI4	YLL039C	MMS4	P38257	691 aa		4.87	□□□□□ -1.63
UBI4	YLL039C	SLX1	P38324	304 aa		4.87	□□□□□ -1.63
UBI4	YLL039C	YHL026C	P38740	315 aa		4.87	□□□□□ -1.63
UBI4	YLL039C	LCB2	P40970	561 aa		4.87	□□□□□ -1.63
UBI4	YLL039C	LAM5	P43560	674 aa		4.87	□□□□□ -1.63
UBI4	YLL039C	TOS3	P43637	560 aa		4.87	□□□□□ -1.63
UBI4	YLL039C	AIP1	P46680	615 aa	Known RBP	4.87	□□□□□ -1.63
UBI4	YLL039C	ORC5	P50874	479 aa		4.87	□□□□□ -1.63
UBI4	YLL039C	CWC22	P53333	577 aa	Known RBP	4.87	□□□□□ -1.63
UBI4	YLL039C	SKY1	Q03656	742 aa		4.87	□□□□□ -1.63
UBI4	YLL039C	TRS130	Q03660	1102 aa		4.87	□□□□□ -1.63
UBI4	YLL039C	UTP14	Q04500	899 aa	Known RBP	4.87	□□□□□ -1.63
UBI4	YLL039C	COG4	Q06096	861 aa		4.87	□□□□□ -1.63
UBI4	YLL039C	YOR059C	Q08448	450 aa	Known RBP	4.87	□□□□□ -1.63
UBI4	YLL039C	NSI1	Q12457	570 aa		4.87	□□□□□ -1.63
UBI4	YLL039C	ZPS1	Q12512	249 aa		4.87	□□□□□ -1.63
UBI4	YLL039C	ADE4	P04046	510 aa	Known RBP	4.86	□□□□□ -1.63
UBI4	YLL039C	SCP160	P06105	1222 aa	Known RBP RIP-Chip data	4.86	□□□□□ -1.63	not detected
UBI4	YLL039C	TOM70	P07213	617 aa	Known RBP	4.86	□□□□□ -1.63
UBI4	YLL039C	RPS4A	P0CX35	261 aa	Known RBP	4.86	□□□□□ -1.63
UBI4	YLL039C	RPS4B	P0CX36	261 aa	Known RBP	4.86	□□□□□ -1.63
UBI4	YLL039C	ATE1	P16639	503 aa		4.86	□□□□□ -1.63
UBI4	YLL039C	GAS1	P22146	559 aa	Known RBP	4.86	□□□□□ -1.63
UBI4	YLL039C	CLB1	P24868	471 aa		4.86	□□□□□ -1.63
UBI4	YLL039C	MRC1	P25588	1096 aa		4.86	□□□□□ -1.63
UBI4	YLL039C	YCR015C	P25616	317 aa		4.86	□□□□□ -1.63
UBI4	YLL039C	HEM3	P28789	327 aa		4.86	□□□□□ -1.63
UBI4	YLL039C	MUD1	P32605	298 aa	Known RBP	4.86	□□□□□ -1.63
UBI4	YLL039C	RPT1	P33299	467 aa	Known RBP	4.86	□□□□□ -1.63
UBI4	YLL039C	CBF5	P33322	483 aa	Known RBP RIP-Chip data	4.86	□□□□□ -1.63	not detected
UBI4	YLL039C	TSA1	P34760	196 aa	Known RBP	4.86	□□□□□ -1.63
UBI4	YLL039C	DSN1	P40568	576 aa		4.86	□□□□□ -1.63
UBI4	YLL039C	RSC8	P43609	557 aa	Known RBP	4.86	□□□□□ -1.63
UBI4	YLL039C	SCD6	P45978	349 aa	Known RBP RIP-Chip data	4.86	□□□□□ -1.63	RIP-Chip
UBI4	YLL039C	ASN1	P49089	572 aa	Known RBP	4.86	□□□□□ -1.63
UBI4	YLL039C	ALT2	P52892	507 aa		4.86	□□□□□ -1.63
UBI4	YLL039C	PRP3	Q03338	469 aa	Predicted RBP	4.86	□□□□□ -1.63
UBI4	YLL039C	EBS1	Q03466	884 aa	Known RBP	4.86	□□□□□ -1.63
UBI4	YLL039C	GFD1	Q04839	188 aa	Known RBP	4.86	□□□□□ -1.63
UBI4	YLL039C	DON1	Q05610	365 aa		4.86	□□□□□ -1.63
UBI4	YLL039C	HCR1	Q05775	265 aa	Known RBP	4.86	□□□□□ -1.63
UBI4	YLL039C	CDA2	Q06703	312 aa		4.86	□□□□□ -1.63
UBI4	YLL039C	AHC1	Q12433	566 aa		4.86	□□□□□ -1.63
UBI4	YLL039C	CDC37	P06101	506 aa	Known RBP	4.85	□□□□□ -1.63
UBI4	YLL039C	PET111	P08468	800 aa		4.85	□□□□□ -1.63

Retrieved 100 of 5,963 RNA–protein pairs in 11 ms