RNA–Protein interactions for RNA: YCR093W

CDC39, Transcript of Component of the CCR4-NOT1 core complex, yeastyeast

Gene CDC39, Length 6,327 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (RIP-Chip)
Gene Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score Detected Interaction
CDC39YCR093W PRP28P23394 588 aa1.39□□□□□ -2.19
CDC39YCR093W PET309P32522 965 aaPredicted RBP1.39□□□□□ -2.19
CDC39YCR093W DUT1P33317 147 aa1.39□□□□□ -2.19
CDC39YCR093W MIP6P38760 659 aaKnown RBP1.39□□□□□ -2.19
CDC39YCR093W NPP2P39997 493 aa1.39□□□□□ -2.19
CDC39YCR093W TPM2P40414 161 aa1.39□□□□□ -2.19
CDC39YCR093W YIL161WP40449 235 aaKnown RBP1.39□□□□□ -2.19
CDC39YCR093W MDG1P53885 366 aa1.39□□□□□ -2.19
CDC39YCR093W SSL2Q00578 843 aa1.39□□□□□ -2.19
CDC39YCR093W ROT1Q03691 256 aa1.39□□□□□ -2.19
CDC39YCR093W YHM2Q04013 314 aa1.39□□□□□ -2.19
CDC39YCR093W OPY2Q06810 360 aa1.39□□□□□ -2.19
CDC39YCR093W PNS1Q12412 539 aa1.39□□□□□ -2.19
CDC39YCR093W XRN1P22147 1528 aaKnown RBP1.39□□□□□ -2.19
CDC39YCR093W SAM35P14693 329 aa1.39□□□□□ -2.19
CDC39YCR093W RRP43P25359 394 aaPredicted RBP1.39□□□□□ -2.19
CDC39YCR093W SRC1Q03707 834 aa1.39□□□□□ -2.19
CDC39YCR093W GAS5Q08193 484 aa1.39□□□□□ -2.19
CDC39YCR093W YDL176WQ12027 708 aa1.39□□□□□ -2.19
CDC39YCR093W YPL066WQ12194 479 aa1.39□□□□□ -2.19
CDC39YCR093W PTP2P29461 750 aa1.38□□□□□ -2.19
CDC39YCR093W EFT1P32324 842 aaKnown RBP1.38□□□□□ -2.19
CDC39YCR093W ELM1P32801 640 aa1.38□□□□□ -2.19
CDC39YCR093W YKU70P32807 602 aa1.38□□□□□ -2.19
CDC39YCR093W TFC3P34111 1160 aa1.38□□□□□ -2.19
CDC39YCR093W YLF2P38746 405 aa1.38□□□□□ -2.19
CDC39YCR093W YJR008WP47085 338 aa1.38□□□□□ -2.19
CDC39YCR093W ASK10P48361 1146 aa1.38□□□□□ -2.19
CDC39YCR093W YGL082WP53155 381 aa1.38□□□□□ -2.19
CDC39YCR093W DNM1P54861 757 aa1.38□□□□□ -2.19
CDC39YCR093W MTD1Q02046 320 aaKnown RBP1.38□□□□□ -2.19
CDC39YCR093W EAR1Q03212 550 aa1.38□□□□□ -2.19
CDC39YCR093W CHC1P22137 1653 aaKnown RBP1.38□□□□□ -2.19
CDC39YCR093W SSM4P40318 1319 aa1.38□□□□□ -2.19
CDC39YCR093W VAS1P07806 1104 aaKnown RBP1.38□□□□□ -2.19
CDC39YCR093W PYC1P11154 1178 aaKnown RBP1.38□□□□□ -2.19
CDC39YCR093W PHO3P24031 467 aa1.38□□□□□ -2.19
CDC39YCR093W YHR020WP38708 688 aaKnown RBP1.38□□□□□ -2.19
CDC39YCR093W STL1P39932 569 aa1.38□□□□□ -2.19
CDC39YCR093W YIL092WP40497 633 aa1.38□□□□□ -2.19
CDC39YCR093W YJR039WP47107 1121 aa1.38□□□□□ -2.19
CDC39YCR093W YGR127WP53275 312 aa1.38□□□□□ -2.19
CDC39YCR093W UBX4P54730 416 aa1.38□□□□□ -2.19
CDC39YCR093W ARG7Q04728 441 aa1.38□□□□□ -2.19
CDC39YCR093W HAL9Q12180 1030 aa1.38□□□□□ -2.19
CDC39YCR093W POM34Q12445 299 aa1.38□□□□□ -2.19
CDC39YCR093W RPN13O13563 156 aa1.38□□□□□ -2.19
CDC39YCR093W RPS13P05756 151 aaKnown RBP1.38□□□□□ -2.19
CDC39YCR093W ERC1P38767 581 aa1.38□□□□□ -2.19
CDC39YCR093W LAM1P38851 1228 aa1.38□□□□□ -2.19
CDC39YCR093W ASE1P50275 885 aa1.38□□□□□ -2.19
CDC39YCR093W YPL108WQ02872 168 aaPredicted RBP1.38□□□□□ -2.19
CDC39YCR093W ATG21Q02887 496 aa1.38□□□□□ -2.19
CDC39YCR093W CRT10Q08226 957 aa1.38□□□□□ -2.19
CDC39YCR093W APM4Q99186 491 aa1.38□□□□□ -2.19
CDC39YCR093W VPS15P22219 1454 aa1.38□□□□□ -2.19
CDC39YCR093W RPS17AP02407 136 aaKnown RBP1.38□□□□□ -2.19
CDC39YCR093W CDC9P04819 755 aa1.38□□□□□ -2.19
CDC39YCR093W RPS17BP14127 136 aaKnown RBP1.38□□□□□ -2.19
CDC39YCR093W TEF4P36008 412 aaKnown RBP1.38□□□□□ -2.19
CDC39YCR093W RPP1P38786 293 aa1.38□□□□□ -2.19
CDC39YCR093W YKE2P52553 114 aa1.38□□□□□ -2.19
CDC39YCR093W MCM6P53091 1017 aaKnown RBP1.38□□□□□ -2.19
CDC39YCR093W MRPL13Q02204 264 aa1.38□□□□□ -2.19
CDC39YCR093W ECM16Q04217 1267 aaKnown RBP1.38□□□□□ -2.19
CDC39YCR093W BLS1Q06071 122 aa1.38□□□□□ -2.19
CDC39YCR093W ESC2Q06340 456 aa1.38□□□□□ -2.19
CDC39YCR093W NEW1Q08972 1196 aaKnown RBP1.38□□□□□ -2.19
CDC39YCR093W BI2P03873 423 aa1.38□□□□□ -2.19
CDC39YCR093W SST2P11972 698 aaKnown RBP1.38□□□□□ -2.19
CDC39YCR093W LAT1P12695 482 aaKnown RBP1.38□□□□□ -2.19
CDC39YCR093W RNR1P21524 888 aaKnown RBP1.38□□□□□ -2.19
CDC39YCR093W GFD2P25370 566 aaKnown RBP1.38□□□□□ -2.19
CDC39YCR093W MVD1P32377 396 aaKnown RBP1.38□□□□□ -2.19
CDC39YCR093W PXA2P34230 853 aa1.38□□□□□ -2.19
CDC39YCR093W BET3P36149 193 aa1.38□□□□□ -2.19
CDC39YCR093W YBL029WP38201 376 aa1.38□□□□□ -2.19
CDC39YCR093W CBR1P38626 284 aaKnown RBP1.38□□□□□ -2.19
CDC39YCR093W KHA1P40309 873 aa1.38□□□□□ -2.19
CDC39YCR093W IST3P40565 148 aaPredicted RBP1.38□□□□□ -2.19
CDC39YCR093W SRB7P47822 140 aa1.38□□□□□ -2.19
CDC39YCR093W MNT2P53059 558 aa1.38□□□□□ -2.19
CDC39YCR093W ATG4P53867 494 aa1.38□□□□□ -2.19
CDC39YCR093W ATG16Q03818 150 aa1.38□□□□□ -2.19
CDC39YCR093W ATG23Q06671 453 aa1.38□□□□□ -2.19
CDC39YCR093W TSR2Q06672 205 aaKnown RBP1.38□□□□□ -2.19
CDC39YCR093W CDA1Q06702 301 aa1.38□□□□□ -2.19
CDC39YCR093W RCL1Q08096 367 aaPredicted RBP1.38□□□□□ -2.19
CDC39YCR093W SFI1Q12369 946 aa1.38□□□□□ -2.19
CDC39YCR093W PRP6P19735 899 aaPredicted RBP1.37□□□□□ -2.19
CDC39YCR093W YKR018CP36114 725 aa1.37□□□□□ -2.19
CDC39YCR093W YHR033WP38690 423 aa1.37□□□□□ -2.19
CDC39YCR093W ETP1P38748 585 aaKnown RBP1.37□□□□□ -2.19
CDC39YCR093W URM1P40554 99 aaPredicted RBP1.37□□□□□ -2.19
CDC39YCR093W CHA4P43634 648 aa1.37□□□□□ -2.19
CDC39YCR093W FOL1P53848 824 aa1.37□□□□□ -2.19
CDC39YCR093W TMA64Q04600 565 aaKnown RBP1.37□□□□□ -2.19
CDC39YCR093W YOL057WQ08225 711 aa1.37□□□□□ -2.19
CDC39YCR093W TSL1P38427 1098 aaKnown RBP1.37□□□□□ -2.19
CDC39YCR093W RIC1P40395 1056 aa1.37□□□□□ -2.19
Retrieved 100 of 5,963 RNA–protein pairs in 27.3 ms