RNA–Protein interactions for RNA: YCL005W-A

VMA9, Transcript of Vacuolar H+ ATPase subunit e of the V-ATPase V0 subcomplex, yeast

Gene VMA9, Length 222 nt, Biotype protein coding.

RNA		Protein				Prediction (catRAPID)		Interaction (RIP-Chip)
Gene	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	Detected Interaction
VMA9	YCL005W-A	APN2	P38207	520 aa		2.56	□□□□□ -2
VMA9	YCL005W-A	YBR259W	P38338	688 aa		2.56	□□□□□ -2
VMA9	YCL005W-A	BCD1	P38772	366 aa		2.56	□□□□□ -2
VMA9	YCL005W-A	FMO1	P38866	432 aa		2.56	□□□□□ -2
VMA9	YCL005W-A	HRB1	P38922	454 aa	Known RBP RIP-Chip data	2.56	□□□□□ -2	not detected
VMA9	YCL005W-A	GID8	P40208	455 aa		2.56	□□□□□ -2
VMA9	YCL005W-A	CCT5	P40413	562 aa	Known RBP	2.56	□□□□□ -2
VMA9	YCL005W-A	STU2	P46675	888 aa		2.56	□□□□□ -2
VMA9	YCL005W-A	MNN11	P46985	422 aa	Known RBP	2.56	□□□□□ -2
VMA9	YCL005W-A	NOP9	P47077	666 aa	Known RBP	2.56	□□□□□ -2
VMA9	YCL005W-A	MPP10	P47083	593 aa	Known RBP	2.56	□□□□□ -2
VMA9	YCL005W-A	YBP2	P53169	641 aa		2.56	□□□□□ -2
VMA9	YCL005W-A	SLI1	P53304	468 aa		2.56	□□□□□ -2
VMA9	YCL005W-A	FOL1	P53848	824 aa		2.56	□□□□□ -2
VMA9	YCL005W-A	JJJ1	P53863	590 aa		2.56	□□□□□ -2
VMA9	YCL005W-A	MUK1	Q02866	612 aa		2.56	□□□□□ -2
VMA9	YCL005W-A	HMO1	Q03973	246 aa	Known RBP	2.56	□□□□□ -2
VMA9	YCL005W-A	IOC4	Q04213	475 aa		2.56	□□□□□ -2
VMA9	YCL005W-A	PDS5	Q04264	1277 aa		2.56	□□□□□ -2
VMA9	YCL005W-A	HFD1	Q04458	532 aa		2.56	□□□□□ -2
VMA9	YCL005W-A	GAD1	Q04792	585 aa		2.56	□□□□□ -2
VMA9	YCL005W-A	TSR1	Q07381	788 aa	Known RBP	2.56	□□□□□ -2
VMA9	YCL005W-A	AIM39	Q08223	395 aa		2.56	□□□□□ -2
VMA9	YCL005W-A	FRE5	Q08908	694 aa		2.56	□□□□□ -2
VMA9	YCL005W-A	YTM1	Q12024	460 aa	Predicted RBP	2.56	□□□□□ -2
VMA9	YCL005W-A	CFT1	Q06632	1357 aa	Known RBP	2.56	□□□□□ -2
VMA9	YCL005W-A	TAF2	P23255	1407 aa		2.56	□□□□□ -2
VMA9	YCL005W-A	MYO2	P19524	1574 aa	Known RBP	2.56	□□□□□ -2
VMA9	YCL005W-A	RAD3	P06839	778 aa		2.55	□□□□□ -2
VMA9	YCL005W-A	ALG7	P07286	448 aa		2.55	□□□□□ -2
VMA9	YCL005W-A	MET3	P08536	511 aa		2.55	□□□□□ -2
VMA9	YCL005W-A	SWI6	P09959	803 aa		2.55	□□□□□ -2
VMA9	YCL005W-A	SSB1	P11484	613 aa	Known RBP	2.55	□□□□□ -2
VMA9	YCL005W-A	PMI40	P29952	429 aa	Known RBP	2.55	□□□□□ -2
VMA9	YCL005W-A	SWE1	P32944	819 aa		2.55	□□□□□ -2
VMA9	YCL005W-A	TFC4	P33339	1025 aa		2.55	□□□□□ -2
VMA9	YCL005W-A	TRM2	P33753	639 aa		2.55	□□□□□ -2
VMA9	YCL005W-A	BYE1	P36106	594 aa		2.55	□□□□□ -2
VMA9	YCL005W-A	EXO84	P38261	753 aa		2.55	□□□□□ -2
VMA9	YCL005W-A	CHS7	P38843	316 aa		2.55	□□□□□ -2
VMA9	YCL005W-A	RTT107	P38850	1070 aa		2.55	□□□□□ -2
VMA9	YCL005W-A	PET100	P38958	111 aa		2.55	□□□□□ -2
VMA9	YCL005W-A	SSB2	P40150	613 aa	Known RBP	2.55	□□□□□ -2
VMA9	YCL005W-A	SSM4	P40318	1319 aa		2.55	□□□□□ -2
VMA9	YCL005W-A	AIM21	P40563	679 aa		2.55	□□□□□ -2
VMA9	YCL005W-A	YIR042C	P40586	236 aa		2.55	□□□□□ -2
VMA9	YCL005W-A	GZF3	P42944	551 aa	Known RBP	2.55	□□□□□ -2
VMA9	YCL005W-A	YJL163C	P46996	555 aa		2.55	□□□□□ -2
VMA9	YCL005W-A	YGL081W	P53156	320 aa		2.55	□□□□□ -2
VMA9	YCL005W-A	YNL050C	P53952	270 aa		2.55	□□□□□ -2
VMA9	YCL005W-A	COG6	P53959	839 aa		2.55	□□□□□ -2
VMA9	YCL005W-A	DLT1	Q04216	342 aa		2.55	□□□□□ -2
VMA9	YCL005W-A	MCM21	Q06675	368 aa		2.55	□□□□□ -2
VMA9	YCL005W-A	YLR419W	Q06698	1435 aa	Known RBP	2.55	□□□□□ -2
VMA9	YCL005W-A	YOL073C	Q08232	322 aa		2.55	□□□□□ -2
VMA9	YCL005W-A	SGO1	Q08490	590 aa		2.55	□□□□□ -2
VMA9	YCL005W-A	HFI1	Q12060	488 aa		2.55	□□□□□ -2
VMA9	YCL005W-A	SEC39	Q12745	709 aa		2.55	□□□□□ -2
VMA9	YCL005W-A	RAD50	P12753	1312 aa		2.54	□□□□□ -2
VMA9	YCL005W-A	RPS17A	P02407	136 aa	Known RBP	2.54	□□□□□ -2
VMA9	YCL005W-A	TUB2	P02557	457 aa	Known RBP	2.54	□□□□□ -2
VMA9	YCL005W-A	LAT1	P12695	482 aa	Known RBP	2.54	□□□□□ -2
VMA9	YCL005W-A	RPS17B	P14127	136 aa	Known RBP	2.54	□□□□□ -2
VMA9	YCL005W-A	CDC26	P14724	124 aa		2.54	□□□□□ -2
VMA9	YCL005W-A	THR4	P16120	514 aa	Known RBP	2.54	□□□□□ -2
VMA9	YCL005W-A	IME1	P21190	360 aa		2.54	□□□□□ -2
VMA9	YCL005W-A	MRC1	P25588	1096 aa		2.54	□□□□□ -2
VMA9	YCL005W-A	HIR1	P32479	840 aa		2.54	□□□□□ -2
VMA9	YCL005W-A	HIS7	P33734	552 aa	Known RBP	2.54	□□□□□ -2
VMA9	YCL005W-A	KTR4	P38131	464 aa		2.54	□□□□□ -2
VMA9	YCL005W-A	YBR071W	P38243	211 aa		2.54	□□□□□ -2
VMA9	YCL005W-A	ECM1	P39715	212 aa		2.54	□□□□□ -2
VMA9	YCL005W-A	GPP2	P40106	250 aa	Known RBP	2.54	□□□□□ -2
VMA9	YCL005W-A	VID28	P40547	921 aa		2.54	□□□□□ -2
VMA9	YCL005W-A	BAP3	P41815	604 aa		2.54	□□□□□ -2
VMA9	YCL005W-A	MSE1	P48525	536 aa		2.54	□□□□□ -2
VMA9	YCL005W-A	RSC1	P53236	928 aa		2.54	□□□□□ -2
VMA9	YCL005W-A	BTN2	P53286	410 aa		2.54	□□□□□ -2
VMA9	YCL005W-A	PXR1	P53335	271 aa	Predicted RBP	2.54	□□□□□ -2
VMA9	YCL005W-A	PAP2	P53632	584 aa	Known RBP	2.54	□□□□□ -2
VMA9	YCL005W-A	NOP15	P53927	220 aa	Predicted RBP	2.54	□□□□□ -2
VMA9	YCL005W-A	SUB1	P54000	292 aa	Known RBP	2.54	□□□□□ -2
VMA9	YCL005W-A	MRS2	Q01926	470 aa		2.54	□□□□□ -2
VMA9	YCL005W-A	GRX3	Q03835	250 aa		2.54	□□□□□ -2
VMA9	YCL005W-A	ADY4	Q05955	493 aa		2.54	□□□□□ -2
VMA9	YCL005W-A	STP4	Q07351	490 aa		2.54	□□□□□ -2
VMA9	YCL005W-A	PUS9	Q12069	462 aa		2.54	□□□□□ -2
VMA9	YCL005W-A	RVB2	Q12464	471 aa	Known RBP	2.54	□□□□□ -2
VMA9	YCL005W-A	CDC37	P06101	506 aa	Known RBP	2.53	□□□□□ -2
VMA9	YCL005W-A	PPR1	P07272	904 aa	Predicted RBP	2.53	□□□□□ -2
VMA9	YCL005W-A	RAD51	P25454	400 aa		2.53	□□□□□ -2
VMA9	YCL005W-A	PSO2	P30620	661 aa		2.53	□□□□□ -2
VMA9	YCL005W-A	HSP104	P31539	908 aa	Known RBP	2.53	□□□□□ -2
VMA9	YCL005W-A	MVD1	P32377	396 aa	Known RBP	2.53	□□□□□ -2
VMA9	YCL005W-A	PLC1	P32383	869 aa		2.53	□□□□□ -2
VMA9	YCL005W-A	YPT7	P32939	208 aa		2.53	□□□□□ -2
VMA9	YCL005W-A	YKR075C	P36155	307 aa		2.53	□□□□□ -2
VMA9	YCL005W-A	TRZ1	P36159	838 aa	Predicted RBP	2.53	□□□□□ -2
VMA9	YCL005W-A	SFB3	P38810	929 aa		2.53	□□□□□ -2
VMA9	YCL005W-A	TOM71	P38825	639 aa	Known RBP	2.53	□□□□□ -2

Retrieved 100 of 5,963 RNA–protein pairs in 20.7 ms