RNA–Protein interactions for RNA: ENSMUST00000113440.1

Ccdc88b-201, Transcript of Coiled-coil domain-containing protein 88B, mousemouse

APPRIS P1 TSL 1 (best) BASIC

Gene Ccdc88b, Length 4,959 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (Experimental data)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
Ccdc88b-201ENSMUST00000113440 Chd1P40201 1711 aa17.78■□□□□ 0.44
Ccdc88b-201ENSMUST00000113440 SdsQ8VBT2 327 aa17.78■□□□□ 0.44
Ccdc88b-201ENSMUST00000113440 RtcbQ99LF4 505 aaKnown RBP17.78■□□□□ 0.44
Ccdc88b-201ENSMUST00000113440 Hspa4Q61316 841 aa17.78■□□□□ 0.44
Ccdc88b-201ENSMUST00000113440 Secisbp2lQ6A098 1086 aaKnown RBP17.78■□□□□ 0.44
Ccdc88b-201ENSMUST00000113440 Zbtb40Q6PCS8 1258 aa17.78■□□□□ 0.44
Ccdc88b-201ENSMUST00000113440 RgmbQ7TQ33 436 aa17.78■□□□□ 0.44
Ccdc88b-201ENSMUST00000113440 Rnf187Q8BFX1 236 aa17.78■□□□□ 0.44
Ccdc88b-201ENSMUST00000113440 9230110C19RikQ8CC70 267 aa17.78■□□□□ 0.44
Ccdc88b-201ENSMUST00000113440 Myl6bQ8CI43 207 aa17.78■□□□□ 0.44
Ccdc88b-201ENSMUST00000113440 Smc1bQ920F6 1248 aa17.78■□□□□ 0.44
Ccdc88b-201ENSMUST00000113440 Kcnj4P52189 445 aa17.78■□□□□ 0.44
Ccdc88b-201ENSMUST00000113440 Lrrc43Q3V0L5 667 aa17.78■□□□□ 0.44
Ccdc88b-201ENSMUST00000113440 Ncaph2Q8BSP2 607 aa17.78■□□□□ 0.44
Ccdc88b-201ENSMUST00000113440 Appbp2Q9DAX9 585 aa17.77■□□□□ 0.44
Ccdc88b-201ENSMUST00000113440 Hmgb2P30681 210 aaKnown RBP17.77■□□□□ 0.44
Ccdc88b-201ENSMUST00000113440 Erich4Q3UNU4 136 aa17.77■□□□□ 0.44
Ccdc88b-201ENSMUST00000113440 DbnlQ62418 436 aa17.77■□□□□ 0.44
Ccdc88b-201ENSMUST00000113440 Nlrp9aQ66X03 949 aa17.77■□□□□ 0.44
Ccdc88b-201ENSMUST00000113440 Atp1a3Q6PIC6 1013 aa17.77■□□□□ 0.44
Ccdc88b-201ENSMUST00000113440 Zscan22Q8BGS5 496 aa17.77■□□□□ 0.44
Ccdc88b-201ENSMUST00000113440 Rtn1Q8K0T0 780 aa17.77■□□□□ 0.44
Ccdc88b-201ENSMUST00000113440 Znf131Q8K3J5 619 aa17.77■□□□□ 0.44
Ccdc88b-201ENSMUST00000113440 Sik1Q60670 779 aa17.77■□□□□ 0.43
Ccdc88b-201ENSMUST00000113440 Tacc1Q6Y685 774 aa17.77■□□□□ 0.43
Ccdc88b-201ENSMUST00000113440 Ttc14Q9CSP9 761 aa17.77■□□□□ 0.43
Ccdc88b-201ENSMUST00000113440 Ercc6l2Q9JIM3 1537 aa17.77■□□□□ 0.43
Ccdc88b-201ENSMUST00000113440 Mindy4Q3UQI9 744 aa17.77■□□□□ 0.43
Ccdc88b-201ENSMUST00000113440 Myo1bP46735 1107 aa17.76■□□□□ 0.43
Ccdc88b-201ENSMUST00000113440 Pm20d1Q8C165 503 aa17.76■□□□□ 0.43
Ccdc88b-201ENSMUST00000113440 Nap1l2P51860 460 aa17.76■□□□□ 0.43
Ccdc88b-201ENSMUST00000113440 Nap1l5Q9JJF0 156 aa17.76■□□□□ 0.43
Ccdc88b-201ENSMUST00000113440 Zcchc11B2RX14 1644 aaKnown RBP17.76■□□□□ 0.43
Ccdc88b-201ENSMUST00000113440 Zfp51Q3U4L8 781 aa17.76■□□□□ 0.43
Ccdc88b-201ENSMUST00000113440 Zkscan4Q5SZT6 480 aa17.76■□□□□ 0.43
Ccdc88b-201ENSMUST00000113440 Ift74Q8BKE9 600 aa17.76■□□□□ 0.43
Ccdc88b-201ENSMUST00000113440 Mrpl12Q9DB15 201 aaKnown RBP17.76■□□□□ 0.43
Ccdc88b-201ENSMUST00000113440 Foxo3Q9WVH4 672 aa17.76■□□□□ 0.43
Ccdc88b-201ENSMUST00000113440 Gemin5Q8BX17 1502 aaKnown RBP17.75■□□□□ 0.43
Ccdc88b-201ENSMUST00000113440 Cdk12Q14AX6 1484 aaKnown RBP17.75■□□□□ 0.43
Ccdc88b-201ENSMUST00000113440 Ccdc191J3QQ27 883 aa17.75■□□□□ 0.43
Ccdc88b-201ENSMUST00000113440 Dync1i1O88485 628 aa17.75■□□□□ 0.43
Ccdc88b-201ENSMUST00000113440 Iqsec3Q3TES0 1195 aa17.75■□□□□ 0.43
Ccdc88b-201ENSMUST00000113440 Ranbp6Q8BIV3 1105 aa17.75■□□□□ 0.43
Ccdc88b-201ENSMUST00000113440 Ncoa5Q91W39 579 aaKnown RBP17.75■□□□□ 0.43
Ccdc88b-201ENSMUST00000113440 Psrc1Q9D0P7 329 aa17.75■□□□□ 0.43
Ccdc88b-201ENSMUST00000113440 Pde3aQ9Z0X4 1141 aa17.75■□□□□ 0.43
Ccdc88b-201ENSMUST00000113440 Abcc12Q80WJ6 1366 aa17.75■□□□□ 0.43
Ccdc88b-201ENSMUST00000113440 Glg1Q61543 1175 aaKnown RBP17.75■□□□□ 0.43
Ccdc88b-201ENSMUST00000113440 EngaseQ8BX80 734 aa17.75■□□□□ 0.43
Ccdc88b-201ENSMUST00000113440 Wdr24Q8CFJ9 790 aa17.75■□□□□ 0.43
Ccdc88b-201ENSMUST00000113440 Naa16Q9DBB4 864 aa17.75■□□□□ 0.43
Ccdc88b-201ENSMUST00000113440 Atp8a2P98200 1148 aa17.75■□□□□ 0.43
Ccdc88b-201ENSMUST00000113440 Nlrp1aQ2LKU9 1182 aa17.75■□□□□ 0.43
Ccdc88b-201ENSMUST00000113440 Ankrd40Q5SUE8 363 aa17.75■□□□□ 0.43
Ccdc88b-201ENSMUST00000113440 Anp32cQ64G17 123 aa17.75■□□□□ 0.43
Ccdc88b-201ENSMUST00000113440 Grpel1Q99LP6 217 aa17.75■□□□□ 0.43
Ccdc88b-201ENSMUST00000113440 Cnga2Q62398 664 aa17.74■□□□□ 0.43
Ccdc88b-201ENSMUST00000113440 Cdc42bpgQ80UW5 1551 aa17.74■□□□□ 0.43
Ccdc88b-201ENSMUST00000113440 Iqsec2Q5DU25 1478 aa17.74■□□□□ 0.43
Ccdc88b-201ENSMUST00000113440 TnrQ8BYI9 1358 aa17.74■□□□□ 0.43
Ccdc88b-201ENSMUST00000113440 Ftl2P49945 183 aa17.74■□□□□ 0.43
Ccdc88b-201ENSMUST00000113440 Tekt3Q6X6Z7 490 aa17.74■□□□□ 0.43
Ccdc88b-201ENSMUST00000113440 Klhl30Q8C3F7 581 aa17.74■□□□□ 0.43
Ccdc88b-201ENSMUST00000113440 Vps18Q8R307 973 aa17.73■□□□□ 0.43
Ccdc88b-201ENSMUST00000113440 Abcc4E9Q236 1325 aa17.73■□□□□ 0.43
Ccdc88b-201ENSMUST00000113440 CltaO08585 235 aa17.73■□□□□ 0.43
Ccdc88b-201ENSMUST00000113440 Sun3Q5SS91 320 aa17.73■□□□□ 0.43
Ccdc88b-201ENSMUST00000113440 Serpinb6bO08804 377 aa17.73■□□□□ 0.43
Ccdc88b-201ENSMUST00000113440 Exoc8Q6PGF7 716 aa17.73■□□□□ 0.43
Ccdc88b-201ENSMUST00000113440 Dbndd1Q9CZ00 160 aa17.73■□□□□ 0.43
Ccdc88b-201ENSMUST00000113440 Cdca7Q9D0M2 382 aa17.73■□□□□ 0.43
Ccdc88b-201ENSMUST00000113440 Knop1Q9Z2Q2 478 aaKnown RBP17.73■□□□□ 0.43
Ccdc88b-201ENSMUST00000113440 Gm9992B2RWK3 458 aa17.72■□□□□ 0.43
Ccdc88b-201ENSMUST00000113440 Unc93aQ710D3 458 aa17.72■□□□□ 0.43
Ccdc88b-201ENSMUST00000113440 Tpcn2Q8BWC0 731 aa17.72■□□□□ 0.43
Ccdc88b-201ENSMUST00000113440 Hdac6Q9Z2V5 1149 aa17.72■□□□□ 0.43
Ccdc88b-201ENSMUST00000113440 Elmsan1E9Q2I4 1089 aaKnown RBP17.72■□□□□ 0.43
Ccdc88b-201ENSMUST00000113440 Pcdhb22Q91XZ8 794 aa17.72■□□□□ 0.43
Ccdc88b-201ENSMUST00000113440 Ddx27Q921N6 760 aaKnown RBP17.72■□□□□ 0.43
Ccdc88b-201ENSMUST00000113440 Klhl10Q9D5V2 608 aa17.72■□□□□ 0.43
Ccdc88b-201ENSMUST00000113440 Dcaf5Q80T85 946 aa17.72■□□□□ 0.43
Ccdc88b-201ENSMUST00000113440 MaddQ80U28 1577 aa17.72■□□□□ 0.43
Ccdc88b-201ENSMUST00000113440 Gng11P61953 73 aa17.71■□□□□ 0.43
Ccdc88b-201ENSMUST00000113440 Hspd1P63038 573 aaKnown RBP17.71■□□□□ 0.43
Ccdc88b-201ENSMUST00000113440 CemipQ8BI06 1361 aa17.71■□□□□ 0.43
Ccdc88b-201ENSMUST00000113440 Clec11aO88200 328 aa17.71■□□□□ 0.43
Ccdc88b-201ENSMUST00000113440 GmnnO88513 206 aa17.71■□□□□ 0.43
Ccdc88b-201ENSMUST00000113440 Zbtb38Q3LR78 1197 aa17.71■□□□□ 0.43
Ccdc88b-201ENSMUST00000113440 NfkbibQ60778 359 aa17.71■□□□□ 0.43
Ccdc88b-201ENSMUST00000113440 Col4a3bpQ9EQG9 624 aa17.71■□□□□ 0.43
Ccdc88b-201ENSMUST00000113440 Sycp2lA0A0M3U1B0 842 aa17.71■□□□□ 0.43
Ccdc88b-201ENSMUST00000113440 Kif2aP28740 705 aa17.71■□□□□ 0.43
Ccdc88b-201ENSMUST00000113440 A0A1W2P7S8 802 aa17.71■□□□□ 0.43
Ccdc88b-201ENSMUST00000113440 MycbpapQ5SUV2 932 aa17.71■□□□□ 0.43
Ccdc88b-201ENSMUST00000113440 Cdc5lQ6A068 802 aaKnown RBP17.71■□□□□ 0.43
Ccdc88b-201ENSMUST00000113440 Ano2Q8CFW1 1002 aa17.71■□□□□ 0.43
Ccdc88b-201ENSMUST00000113440 Sh3tc1G3X9F6 1346 aa17.7■□□□□ 0.42
Ccdc88b-201ENSMUST00000113440 Mapkapk5O54992 473 aa17.7■□□□□ 0.42
Ccdc88b-201ENSMUST00000113440 Ccdc73Q8CDM4 1066 aa17.7■□□□□ 0.42
Retrieved 100 of 22,080 RNA–protein pairs in 18.9 ms