Protein–RNA interactions for Protein: Q8K0T0

Rtn1, Reticulon-1, mousemouse

Predictions only

Length 780 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Rtn1Q8K0T0 Gm25239-201ENSMUST00000174915 86 ntBASIC43,03■■■■■ 4,48
Rtn1Q8K0T0 Necab2-201ENSMUST00000098363 1976 ntAPPRIS P1 TSL 1 (best) BASIC39,58■■■■□ 3,93
Rtn1Q8K0T0 Smc2os-201ENSMUST00000141473 626 ntTSL 1 (best) BASIC39,56■■■■□ 3,92
Rtn1Q8K0T0 1810037I17Rik-201ENSMUST00000106429 1160 ntAPPRIS P1 TSL 1 (best) BASIC39,05■■■■□ 3,84
Rtn1Q8K0T0 Khdrbs3-201ENSMUST00000022954 1887 ntAPPRIS P1 TSL 1 (best) BASIC38,56■■■■□ 3,76
Rtn1Q8K0T0 Cacng8-202ENSMUST00000182222 1897 ntAPPRIS P1 TSL 5 BASIC38,24■■■■□ 3,71
Rtn1Q8K0T0 Gm15042-201ENSMUST00000120212 883 ntBASIC38,08■■■■□ 3,69
Rtn1Q8K0T0 Gm15045-201ENSMUST00000117359 883 ntBASIC37,35■■■■□ 3,57
Rtn1Q8K0T0 Gm24109-201ENSMUST00000175489 103 ntBASIC37,08■■■■□ 3,53
Rtn1Q8K0T0 Plekho1-201ENSMUST00000015889 1931 ntAPPRIS P1 TSL 1 (best) BASIC36,96■■■■□ 3,51
Rtn1Q8K0T0 Kcnmb4-201ENSMUST00000068233 1367 ntAPPRIS P1 TSL 1 (best) BASIC36,73■■■■□ 3,47
Rtn1Q8K0T0 Psd-208ENSMUST00000224556 2034 ntBASIC36,69■■■■□ 3,46
Rtn1Q8K0T0 B330016D10Rik-201ENSMUST00000049927 1701 ntBASIC36,34■■■■□ 3,41
Rtn1Q8K0T0 Gatad1-202ENSMUST00000119783 1278 ntAPPRIS ALT2 TSL 1 (best) BASIC36,28■■■■□ 3,4
Rtn1Q8K0T0 Hnrnpd-201ENSMUST00000019128 2000 ntAPPRIS ALT2 TSL 1 (best) BASIC36,22■■■■□ 3,39
Rtn1Q8K0T0 Trnp1-202ENSMUST00000125541 1654 ntAPPRIS P1 TSL 1 (best) BASIC36,14■■■■□ 3,38
Rtn1Q8K0T0 Gm23366-201ENSMUST00000175022 89 ntBASIC35,99■■■■□ 3,35
Rtn1Q8K0T0 Kdm2a-208ENSMUST00000176483 1128 ntTSL 1 (best) BASIC35,89■■■■□ 3,34
Rtn1Q8K0T0 Arhgdig-201ENSMUST00000025019 1032 ntAPPRIS P1 TSL 1 (best) BASIC35,79■■■■□ 3,32
Rtn1Q8K0T0 Ankrd40-202ENSMUST00000051221 1477 ntAPPRIS ALT2 TSL 1 (best) BASIC35,78■■■■□ 3,32
Rtn1Q8K0T0 Rhno1-201ENSMUST00000057421 1584 ntAPPRIS P1 TSL 1 (best) BASIC35,72■■■■□ 3,31
Rtn1Q8K0T0 Hoxd8-202ENSMUST00000074721 1758 ntAPPRIS ALT2 TSL 1 (best) BASIC35,63■■■■□ 3,29
Rtn1Q8K0T0 Pabpn1-207ENSMUST00000150975 1775 ntAPPRIS ALT2 TSL 1 (best) BASIC35,56■■■■□ 3,28
Rtn1Q8K0T0 Ybx2-201ENSMUST00000018698 1673 ntAPPRIS P3 TSL 1 (best) BASIC35,55■■■■□ 3,28
Rtn1Q8K0T0 Cd63-201ENSMUST00000026407 1063 ntAPPRIS P1 TSL 1 (best) BASIC35,46■■■■□ 3,27
Rtn1Q8K0T0 Tmem165-201ENSMUST00000031144 1897 ntAPPRIS P1 TSL 1 (best) BASIC35,45■■■■□ 3,27
Rtn1Q8K0T0 4930537H20Rik-201ENSMUST00000200437 1683 ntBASIC35,42■■■■□ 3,26
Rtn1Q8K0T0 Mbd2-201ENSMUST00000074058 1953 ntAPPRIS P1 TSL 1 (best) BASIC35,36■■■■□ 3,25
Rtn1Q8K0T0 Ctdnep1-201ENSMUST00000108593 1627 ntAPPRIS P1 TSL 1 (best) BASIC35,32■■■■□ 3,25
Rtn1Q8K0T0 Six2-202ENSMUST00000163568 2119 ntAPPRIS P1 TSL 1 (best) BASIC35,19■■■■□ 3,22
Rtn1Q8K0T0 Tusc1-201ENSMUST00000066774 1374 ntAPPRIS P1 BASIC35,03■■■■□ 3,2
Rtn1Q8K0T0 Ppp2r5c-206ENSMUST00000222276 1802 ntTSL 2 BASIC34,97■■■■□ 3,19
Rtn1Q8K0T0 AC153911.1-202ENSMUST00000218534 1034 ntBASIC34,96■■■■□ 3,19
Rtn1Q8K0T0 Pabpn1-202ENSMUST00000116476 1761 ntAPPRIS ALT2 TSL 1 (best) BASIC34,85■■■■□ 3,17
Rtn1Q8K0T0 Pkdcc-204ENSMUST00000170794 2446 ntAPPRIS P1 TSL 1 (best) BASIC34,82■■■■□ 3,16
Rtn1Q8K0T0 Wtip-201ENSMUST00000038537 1962 ntAPPRIS P1 TSL 1 (best) BASIC34,62■■■■□ 3,13
Rtn1Q8K0T0 Zic2-201ENSMUST00000075888 2440 ntAPPRIS P1 TSL 1 (best) BASIC34,56■■■■□ 3,12
Rtn1Q8K0T0 Six2-201ENSMUST00000024947 1812 ntAPPRIS P1 TSL 1 (best) BASIC34,52■■■■□ 3,12
Rtn1Q8K0T0 Cyhr1-203ENSMUST00000176274 1854 ntAPPRIS ALT2 TSL 1 (best) BASIC34,46■■■■□ 3,11
Rtn1Q8K0T0 Rrnad1-207ENSMUST00000160143 1568 ntTSL 5 BASIC34,34■■■■□ 3,09
Rtn1Q8K0T0 Gm20732-201ENSMUST00000175699 686 ntTSL 3 BASIC34,28■■■■□ 3,08
Rtn1Q8K0T0 Poldip2-201ENSMUST00000001127 2054 ntAPPRIS P1 TSL 1 (best) BASIC34,27■■■■□ 3,08
Rtn1Q8K0T0 Sh3glb2-204ENSMUST00000113621 1851 ntTSL 5 BASIC34,03■■■■□ 3,04
Rtn1Q8K0T0 Rab12-201ENSMUST00000070538 2057 ntAPPRIS ALT2 TSL 1 (best) BASIC34,01■■■■□ 3,04
Rtn1Q8K0T0 Rexo2-201ENSMUST00000034524 1077 ntAPPRIS P1 TSL 1 (best) BASIC33,99■■■■□ 3,03
Rtn1Q8K0T0 Nfic-204ENSMUST00000117966 1655 ntTSL 1 (best) BASIC33,95■■■■□ 3,03
Rtn1Q8K0T0 Pkig-201ENSMUST00000064703 1036 ntAPPRIS P1 TSL 1 (best) BASIC33,93■■■■□ 3,02
Rtn1Q8K0T0 Fgf2-204ENSMUST00000138563 1240 ntAPPRIS P2 TSL 5 BASIC33,91■■■■□ 3,02
Rtn1Q8K0T0 Nfix-202ENSMUST00000099070 1728 ntAPPRIS P1 TSL 1 (best) BASIC33,87■■■■□ 3,01
Rtn1Q8K0T0 Gm10524-201ENSMUST00000181931 1893 ntBASIC33,86■■■■□ 3,01
Rtn1Q8K0T0 Gm25238-201ENSMUST00000174914 89 ntBASIC33,81■■■■□ 3
Rtn1Q8K0T0 Rnf126-201ENSMUST00000047203 1639 ntAPPRIS P1 TSL 1 (best) BASIC33,79■■■■□ 3
Rtn1Q8K0T0 Cdk9-201ENSMUST00000009699 1733 ntAPPRIS P1 TSL 1 (best) BASIC33,75■■■□□ 2,99
Rtn1Q8K0T0 Drap1-203ENSMUST00000113674 939 ntTSL 2 BASIC33,69■■■□□ 2,98
Rtn1Q8K0T0 Fgf18-201ENSMUST00000020507 1086 ntAPPRIS P1 TSL 1 (best) BASIC33,68■■■□□ 2,98
Rtn1Q8K0T0 Tmem259-201ENSMUST00000052885 2225 ntAPPRIS P1 TSL 1 (best) BASIC33,66■■■□□ 2,98
Rtn1Q8K0T0 Drap1-201ENSMUST00000025853 992 ntAPPRIS P1 TSL 1 (best) BASIC33,65■■■□□ 2,98
Rtn1Q8K0T0 Sh3glb2-201ENSMUST00000028214 1810 ntAPPRIS P1 TSL 1 (best) BASIC33,59■■■□□ 2,97
Rtn1Q8K0T0 Hoxa4-201ENSMUST00000101395 1594 ntAPPRIS P1 TSL 1 (best) BASIC33,51■■■□□ 2,95
Rtn1Q8K0T0 Gm27325-201ENSMUST00000175467 74 ntBASIC33,46■■■□□ 2,95
Rtn1Q8K0T0 Mta3-202ENSMUST00000112349 1728 ntAPPRIS ALT2 TSL 1 (best) BASIC33,39■■■□□ 2,94
Rtn1Q8K0T0 Gdf7-201ENSMUST00000037313 1423 ntAPPRIS P2 TSL 5 BASIC33,34■■■□□ 2,93
Rtn1Q8K0T0 Sh3glb2-214ENSMUST00000163668 1733 ntTSL 5 BASIC33,33■■■□□ 2,93
Rtn1Q8K0T0 Rnf149-204ENSMUST00000195705 389 ntTSL 3 BASIC33,31■■■□□ 2,92
Rtn1Q8K0T0 Foxd3-201ENSMUST00000087285 2324 ntAPPRIS P1 BASIC33,3■■■□□ 2,92
Rtn1Q8K0T0 Nkx3-2-201ENSMUST00000060820 1718 ntAPPRIS P1 TSL 1 (best) BASIC33,28■■■□□ 2,92
Rtn1Q8K0T0 CT025624.2-201ENSMUST00000223609 1909 ntBASIC33,26■■■□□ 2,91
Rtn1Q8K0T0 Atoh7-201ENSMUST00000044059 1629 ntAPPRIS P1 BASIC33,25■■■□□ 2,91
Rtn1Q8K0T0 Gm12100-201ENSMUST00000150255 1933 ntTSL 1 (best) BASIC33,25■■■□□ 2,91
Rtn1Q8K0T0 Trabd-203ENSMUST00000165690 1941 ntAPPRIS P2 TSL 1 (best) BASIC33,22■■■□□ 2,91
Rtn1Q8K0T0 Syce2-204ENSMUST00000170296 929 ntAPPRIS ALT2 TSL 2 BASIC33,16■■■□□ 2,9
Rtn1Q8K0T0 Gm42596-201ENSMUST00000196305 1958 ntBASIC33,16■■■□□ 2,9
Rtn1Q8K0T0 Rab12-205ENSMUST00000167962 2010 ntAPPRIS P2 TSL 1 (best) BASIC33,11■■■□□ 2,89
Rtn1Q8K0T0 Asmt-201ENSMUST00000178693 1191 ntAPPRIS P1 TSL 1 (best) BASIC33,08■■■□□ 2,89
Rtn1Q8K0T0 Nrgn-201ENSMUST00000065668 1453 ntAPPRIS P1 TSL 1 (best) BASIC33,06■■■□□ 2,88
Rtn1Q8K0T0 Cacng8-201ENSMUST00000092351 1380 ntAPPRIS P1 TSL 1 (best) BASIC32,98■■■□□ 2,87
Rtn1Q8K0T0 Tprgl-202ENSMUST00000105639 642 ntTSL 5 BASIC32,83■■■□□ 2,85
Rtn1Q8K0T0 Crk-204ENSMUST00000108426 671 ntTSL 3 BASIC32,83■■■□□ 2,85
Rtn1Q8K0T0 Glt8d1-201ENSMUST00000022476 2018 ntAPPRIS P1 TSL 1 (best) BASIC32,82■■■□□ 2,84
Rtn1Q8K0T0 Crk-202ENSMUST00000093115 965 ntTSL 1 (best) BASIC32,79■■■□□ 2,84
Rtn1Q8K0T0 Tmed7-201ENSMUST00000036030 1436 ntTSL 5 BASIC32,69■■■□□ 2,82
Rtn1Q8K0T0 Vps37d-201ENSMUST00000067935 1544 ntAPPRIS P1 TSL 1 (best) BASIC32,69■■■□□ 2,82
Rtn1Q8K0T0 Gm26699-201ENSMUST00000180825 2291 ntTSL 5 BASIC32,66■■■□□ 2,82
Rtn1Q8K0T0 Stard10-201ENSMUST00000032927 1400 ntAPPRIS P1 TSL 1 (best) BASIC32,63■■■□□ 2,81
Rtn1Q8K0T0 G6pc3-202ENSMUST00000078975 1573 ntAPPRIS P1 TSL 1 (best) BASIC32,56■■■□□ 2,8
Rtn1Q8K0T0 Fbxo6-203ENSMUST00000105706 1938 ntAPPRIS P1 TSL 1 (best) BASIC32,55■■■□□ 2,8
Rtn1Q8K0T0 Tmem240-201ENSMUST00000127188 1308 ntAPPRIS P1 TSL 2 BASIC32,52■■■□□ 2,8
Rtn1Q8K0T0 Rab21-202ENSMUST00000218831 843 ntBASIC32,52■■■□□ 2,8
Rtn1Q8K0T0 Vsig8-201ENSMUST00000061835 1801 ntAPPRIS P1 TSL 1 (best) BASIC32,51■■■□□ 2,8
Rtn1Q8K0T0 Ube2ql1-201ENSMUST00000065118 2674 ntAPPRIS P1 TSL 1 (best) BASIC32,49■■■□□ 2,79
Rtn1Q8K0T0 Sept3-202ENSMUST00000116423 2467 ntAPPRIS P1 TSL 1 (best) BASIC32,48■■■□□ 2,79
Rtn1Q8K0T0 Ppp2cb-201ENSMUST00000009774 1469 ntAPPRIS P1 TSL 1 (best) BASIC32,45■■■□□ 2,79
Rtn1Q8K0T0 Ccm2l-201ENSMUST00000109800 2158 ntAPPRIS P1 TSL 5 BASIC32,44■■■□□ 2,78
Rtn1Q8K0T0 Abhd17a-204ENSMUST00000191440 1529 ntTSL 1 (best) BASIC32,44■■■□□ 2,78
Rtn1Q8K0T0 Glrx5-203ENSMUST00000223244 793 ntTSL 5 BASIC32,36■■■□□ 2,77
Rtn1Q8K0T0 Chmp4b-201ENSMUST00000044277 1616 ntAPPRIS P1 TSL 1 (best) BASIC32,36■■■□□ 2,77
Rtn1Q8K0T0 Agap3-206ENSMUST00000212381 1191 ntTSL 5 BASIC32,34■■■□□ 2,77
Rtn1Q8K0T0 Jdp2-203ENSMUST00000177587 1645 ntAPPRIS P1 TSL 1 (best) BASIC32,29■■■□□ 2,76
Rtn1Q8K0T0 Atp1b3-201ENSMUST00000034983 1994 ntAPPRIS P1 TSL 1 (best) BASIC32,27■■■□□ 2,76
Rtn1Q8K0T0 Nt5dc2-204ENSMUST00000227096 1848 ntAPPRIS P5 BASIC32,26■■■□□ 2,76
Retrieved 100 of 76,532 protein–RNA pairs in 7,5 ms