RNA–Protein interactions for RNA: ENST00000496826.1

USF3-204, Transcript of upstream transcription factor family member 3, humanhuman

TSL 1 (best)

Gene USF3, Length 8,397 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USF3-204ENST00000496826 ARPC1BO15143 372 aaKnown RBP5.26□□□□□ -1.57
USF3-204ENST00000496826 PRKRAO75569 313 aaKnown RBP5.26□□□□□ -1.57
USF3-204ENST00000496826 CST4P01036 141 aa5.26□□□□□ -1.57
USF3-204ENST00000496826 AMBPP02760 352 aa5.26□□□□□ -1.57
USF3-204ENST00000496826 IGHV4-34P06331 123 aa5.26□□□□□ -1.57
USF3-204ENST00000496826 HOXA5P20719 270 aa5.26□□□□□ -1.57
USF3-204ENST00000496826 ISXQ2M1V0 245 aa5.26□□□□□ -1.57
USF3-204ENST00000496826 LRP10Q7Z4F1 713 aa5.26□□□□□ -1.57
USF3-204ENST00000496826 SUSD3Q96L08 255 aa5.26□□□□□ -1.57
USF3-204ENST00000496826 C19orf43Q9BQ61 176 aa5.26□□□□□ -1.57
USF3-204ENST00000496826 GSX2Q9BZM3 304 aa5.26□□□□□ -1.57
USF3-204ENST00000496826 TAAR2Q9P1P5 351 aa5.26□□□□□ -1.57
USF3-204ENST00000496826 PPT2Q9UMR5 302 aa5.26□□□□□ -1.57
USF3-204ENST00000496826 SNRNP200O75643 2136 aaKnown RBP5.26□□□□□ -1.57
USF3-204ENST00000496826 CD5P06127 495 aa5.26□□□□□ -1.57
USF3-204ENST00000496826 ELLP55199 621 aaPredicted RBP5.26□□□□□ -1.57
USF3-204ENST00000496826 EMX1Q04741 257 aaPredicted RBP5.26□□□□□ -1.57
USF3-204ENST00000496826 MGAT3Q09327 533 aa5.26□□□□□ -1.57
USF3-204ENST00000496826 ZNF385CQ66K41 422 aaPredicted RBP5.26□□□□□ -1.57
USF3-204ENST00000496826 GBGT1Q8N5D6 347 aa5.26□□□□□ -1.57
USF3-204ENST00000496826 CELF2-AS1Q8N7Q2 184 aa5.26□□□□□ -1.57
USF3-204ENST00000496826 ZNF689Q96CS4 500 aaPredicted RBP5.26□□□□□ -1.57
USF3-204ENST00000496826 SFXN3Q9BWM7 321 aa5.26□□□□□ -1.57
USF3-204ENST00000496826 ZBP1Q9H171 429 aa5.26□□□□□ -1.57
USF3-204ENST00000496826 TIMM10BQ9Y5J6 103 aa5.26□□□□□ -1.57
USF3-204ENST00000496826 MYH7P12883 1935 aa5.26□□□□□ -1.57
USF3-204ENST00000496826 TRAV9-2A0A087WT02 112 aa5.26□□□□□ -1.57
USF3-204ENST00000496826 A0A0J9YY10 115 aa5.26□□□□□ -1.57
USF3-204ENST00000496826 CACNG3O60359 315 aa5.26□□□□□ -1.57
USF3-204ENST00000496826 NKX2-2O95096 273 aa5.26□□□□□ -1.57
USF3-204ENST00000496826 OSMP13725 252 aa5.26□□□□□ -1.57
USF3-204ENST00000496826 ARRB2P32121 409 aa5.26□□□□□ -1.57
USF3-204ENST00000496826 RNF182Q8N6D2 247 aa5.26□□□□□ -1.57
USF3-204ENST00000496826 ATOH1Q92858 354 aaPredicted RBP5.26□□□□□ -1.57
USF3-204ENST00000496826 TBX15Q96SF7 602 aa5.26□□□□□ -1.57
USF3-204ENST00000496826 HSD17B10Q99714 261 aaKnown RBP5.26□□□□□ -1.57
USF3-204ENST00000496826 MTFP1Q9UDX5 166 aa5.26□□□□□ -1.57
USF3-204ENST00000496826 INTS1Q8N201 2190 aaKnown RBP5.26□□□□□ -1.57
USF3-204ENST00000496826 DNMT1P26358 1616 aaKnown RBP5.26□□□□□ -1.57
USF3-204ENST00000496826 BUD23O43709 281 aaKnown RBP5.26□□□□□ -1.57
USF3-204ENST00000496826 JUNBP17275 347 aaPredicted RBP5.26□□□□□ -1.57
USF3-204ENST00000496826 PSMB1P20618 241 aaKnown RBP5.26□□□□□ -1.57
USF3-204ENST00000496826 TIA1P31483 386 aaKnown RBP eCLIP5.26□□□□□ -1.57
USF3-204ENST00000496826 SMAD2Q15796 467 aaKnown RBP5.26□□□□□ -1.57
USF3-204ENST00000496826 HSD11B1LQ7Z5J1 315 aa5.26□□□□□ -1.57
USF3-204ENST00000496826 ASB10Q8WXI3 467 aa5.26□□□□□ -1.57
USF3-204ENST00000496826 GUCD1Q96NT3 240 aa5.26□□□□□ -1.57
USF3-204ENST00000496826 GPR35Q9HC97 309 aa5.26□□□□□ -1.57
USF3-204ENST00000496826 MED14O60244 1454 aa5.26□□□□□ -1.57
USF3-204ENST00000496826 HIST1H1DP16402 221 aaKnown RBP5.26□□□□□ -1.57
USF3-204ENST00000496826 TMEM30BQ3MIR4 351 aa5.26□□□□□ -1.57
USF3-204ENST00000496826 C4orf48Q5BLP8 95 aa5.26□□□□□ -1.57
USF3-204ENST00000496826 ZFAND6Q6FIF0 208 aa5.26□□□□□ -1.57
USF3-204ENST00000496826 CGB2Q6NT52 195 aa5.26□□□□□ -1.57
USF3-204ENST00000496826 CBLN2Q8IUK8 224 aa5.26□□□□□ -1.57
USF3-204ENST00000496826 FMR1NBQ8N0W7 255 aaPredicted RBP5.26□□□□□ -1.57
USF3-204ENST00000496826 ABHD17AQ96GS6 310 aa5.26□□□□□ -1.57
USF3-204ENST00000496826 TNFRSF18Q9Y5U5 241 aa5.26□□□□□ -1.57
USF3-204ENST00000496826 PPP6CO00743 305 aa5.26□□□□□ -1.57
USF3-204ENST00000496826 RAB29O14966 203 aa5.26□□□□□ -1.57
USF3-204ENST00000496826 SCAMP2O15127 329 aaKnown RBP5.26□□□□□ -1.57
USF3-204ENST00000496826 PAX1P15863 534 aa5.26□□□□□ -1.57
USF3-204ENST00000496826 CD44P16070 742 aaKnown RBP5.26□□□□□ -1.57
USF3-204ENST00000496826 GDNFP39905 211 aa5.26□□□□□ -1.57
USF3-204ENST00000496826 STC1P52823 247 aa5.26□□□□□ -1.57
USF3-204ENST00000496826 TMEM108Q6UXF1 575 aa5.26□□□□□ -1.57
USF3-204ENST00000496826 ZCCHC23Q6ZST2 131 aa5.26□□□□□ -1.57
USF3-204ENST00000496826 HMGCLL1Q8TB92 370 aa5.26□□□□□ -1.57
USF3-204ENST00000496826 PAXXQ9BUH6 204 aa5.26□□□□□ -1.57
USF3-204ENST00000496826 VN1R1Q9GZP7 353 aa5.26□□□□□ -1.57
USF3-204ENST00000496826 WDR76Q9H967 626 aa5.26□□□□□ -1.57
USF3-204ENST00000496826 GLRX2Q9NS18 164 aa5.26□□□□□ -1.57
USF3-204ENST00000496826 RPL27P61353 136 aaKnown RBP5.26□□□□□ -1.57
USF3-204ENST00000496826 GCSAMLQ5JQS6 135 aa5.26□□□□□ -1.57
USF3-204ENST00000496826 CADM4Q8NFZ8 388 aa5.26□□□□□ -1.57
USF3-204ENST00000496826 ZNF668Q96K58 619 aaPredicted RBP5.26□□□□□ -1.57
USF3-204ENST00000496826 NCOA3Q9Y6Q9 1424 aa5.26□□□□□ -1.57
USF3-204ENST00000496826 ARHGEF40Q8TER5 1519 aa5.25□□□□□ -1.57
USF3-204ENST00000496826 RBM14-RBM4A0A0A0MSL8 147 aaKnown RBP5.25□□□□□ -1.57
USF3-204ENST00000496826 TRBV9A0A0B4J1U6 114 aa5.25□□□□□ -1.57
USF3-204ENST00000496826 MYBPHLA2RUH7 354 aa5.25□□□□□ -1.57
USF3-204ENST00000496826 OR11H12B2RN74 326 aa5.25□□□□□ -1.57
USF3-204ENST00000496826 MRPL3P09001 348 aaKnown RBP5.25□□□□□ -1.57
USF3-204ENST00000496826 CPMP14384 443 aa5.25□□□□□ -1.57
USF3-204ENST00000496826 HLA-DRB5Q30154 266 aa5.25□□□□□ -1.57
USF3-204ENST00000496826 BSXQ3C1V8 233 aa5.25□□□□□ -1.57
USF3-204ENST00000496826 ZNF528Q3MIS6 628 aa5.25□□□□□ -1.57
USF3-204ENST00000496826 MRPL55Q7Z7F7 128 aaKnown RBP5.25□□□□□ -1.57
USF3-204ENST00000496826 DNAJC5GQ8N7S2 189 aa5.25□□□□□ -1.57
USF3-204ENST00000496826 OR11H1Q8NG94 326 aa5.25□□□□□ -1.57
USF3-204ENST00000496826 OR11H2Q8NH07 326 aa5.25□□□□□ -1.57
USF3-204ENST00000496826 MSLNLQ96KJ4 702 aa5.25□□□□□ -1.57
USF3-204ENST00000496826 TMED7Q9Y3B3 224 aa5.25□□□□□ -1.57
USF3-204ENST00000496826 RAPGEF6Q8TEU7 1601 aa5.25□□□□□ -1.57
USF3-204ENST00000496826 UBE2AP49459 152 aa5.25□□□□□ -1.57
USF3-204ENST00000496826 PQLC3Q8N755 202 aa5.25□□□□□ -1.57
USF3-204ENST00000496826 PIK3IP1Q96FE7 263 aa5.25□□□□□ -1.57
USF3-204ENST00000496826 TRAV8-4A0A0B4J246 113 aa5.25□□□□□ -1.57
USF3-204ENST00000496826 A0A1B0GTH9 108 aa5.25□□□□□ -1.57
USF3-204ENST00000496826 A0A1W2PQL4 384 aaPredicted RBP5.25□□□□□ -1.57
Retrieved 100 of 20,778 RNA–protein pairs in 9.9 ms