RNA–Protein interactions for RNA: ENST00000496826.1

USF3-204, Transcript of upstream transcription factor family member 3, humanhuman

TSL 1 (best)

Gene USF3, Length 8,397 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USF3-204ENST00000496826 PELP1Q8IZL8 1130 aaKnown RBP10.04□□□□□ -0.8
USF3-204ENST00000496826 YTHDC1Q96MU7 727 aaKnown RBP9.53□□□□□ -0.88
USF3-204ENST00000496826 CCER1Q8TC90 406 aaPredicted RBP9.5□□□□□ -0.89
USF3-204ENST00000496826 MYT1Q01538 1121 aa9.37□□□□□ -0.91
USF3-204ENST00000496826 FAM9AQ8IZU1 332 aaPredicted RBP9.28□□□□□ -0.92
USF3-204ENST00000496826 ERICH6Q7L0X2 663 aa9.23□□□□□ -0.93
USF3-204ENST00000496826 TTBK1Q5TCY1 1321 aaPredicted RBP8.96□□□□□ -0.98
USF3-204ENST00000496826 DAXXQ9UER7 740 aaPredicted RBP8.86□□□□□ -0.99
USF3-204ENST00000496826 CLSPNQ9HAW4 1339 aa8.86□□□□□ -0.99
USF3-204ENST00000496826 APLP2Q06481 763 aa8.74□□□□□ -1.01
USF3-204ENST00000496826 NEFLP07196 543 aa8.71□□□□□ -1.01
USF3-204ENST00000496826 CENPBP07199 599 aaPredicted RBP8.65□□□□□ -1.02
USF3-204ENST00000496826 NEFMP07197 916 aa8.59□□□□□ -1.03
USF3-204ENST00000496826 TRIM26Q12899 539 aaPredicted RBP8.53□□□□□ -1.04
USF3-204ENST00000496826 GLIPR1L2Q4G1C9 344 aa8.5□□□□□ -1.05
USF3-204ENST00000496826 ZNF316A6NFI3 1004 aaPredicted RBP8.46□□□□□ -1.05
USF3-204ENST00000496826 CDK11BP21127 795 aaKnown RBP8.46□□□□□ -1.06
USF3-204ENST00000496826 CDK11AQ9UQ88 783 aaPredicted RBP8.46□□□□□ -1.06
USF3-204ENST00000496826 RTL5Q5HYW3 569 aaPredicted RBP8.45□□□□□ -1.06
USF3-204ENST00000496826 DCAF8L2P0C7V8 631 aa8.4□□□□□ -1.07
USF3-204ENST00000496826 RANGAP1P46060 587 aaPredicted RBP8.4□□□□□ -1.07
USF3-204ENST00000496826 ZBTB47Q9UFB7 747 aaPredicted RBP8.38□□□□□ -1.07
USF3-204ENST00000496826 SLC24A1O60721 1099 aa8.37□□□□□ -1.07
USF3-204ENST00000496826 ZEB1P37275 1124 aaPredicted RBP8.35□□□□□ -1.07
USF3-204ENST00000496826 ANP32BQ92688 251 aaKnown RBP8.34□□□□□ -1.07
USF3-204ENST00000496826 POLR3GLQ9BT43 218 aa8.33□□□□□ -1.08
USF3-204ENST00000496826 MYT1LQ9UL68 1186 aa8.23□□□□□ -1.09
USF3-204ENST00000496826 TNNT2P45379 298 aaPredicted RBP8.2□□□□□ -1.1
USF3-204ENST00000496826 TRIM44Q96DX7 344 aaPredicted RBP8.12□□□□□ -1.11
USF3-204ENST00000496826 L1TD1Q5T7N2 865 aaKnown RBP8.09□□□□□ -1.11
USF3-204ENST00000496826 NCLP19338 710 aaKnown RBP8.05□□□□□ -1.12
USF3-204ENST00000496826 EIF5BO60841 1220 aaKnown RBP8.05□□□□□ -1.12
USF3-204ENST00000496826 NEUROD1Q13562 356 aa8.05□□□□□ -1.12
USF3-204ENST00000496826 ATP1B4Q9UN42 357 aaPredicted RBP8.04□□□□□ -1.12
USF3-204ENST00000496826 ANP32EQ9BTT0 268 aa8.03□□□□□ -1.12
USF3-204ENST00000496826 CALRP27797 417 aaKnown RBP8.03□□□□□ -1.12
USF3-204ENST00000496826 EHMT2Q96KQ7 1210 aa8.01□□□□□ -1.13
USF3-204ENST00000496826 USP35Q9P2H5 1018 aa8.01□□□□□ -1.13
USF3-204ENST00000496826 KRI1Q8N9T8 703 aaKnown RBP7.95□□□□□ -1.14
USF3-204ENST00000496826 SUPT5HO00267 1087 aaKnown RBP7.94□□□□□ -1.14
USF3-204ENST00000496826 UPF2Q9HAU5 1272 aaKnown RBP7.93□□□□□ -1.14
USF3-204ENST00000496826 SLC4A1APQ9BWU0 796 aaKnown RBP7.91□□□□□ -1.14
USF3-204ENST00000496826 NRDCO43847 1150 aa7.91□□□□□ -1.14
USF3-204ENST00000496826 HSP90AA1P07900 732 aaKnown RBP7.91□□□□□ -1.14
USF3-204ENST00000496826 HMGB3O15347 200 aaKnown RBP7.9□□□□□ -1.15
USF3-204ENST00000496826 GOLGA6L6A8MZA4 724 aa7.9□□□□□ -1.15
USF3-204ENST00000496826 GOLGA6L22H0YM25 854 aa7.88□□□□□ -1.15
USF3-204ENST00000496826 ZRSR1Q15695 479 aaKnown RBP7.88□□□□□ -1.15
USF3-204ENST00000496826 CNGB1Q14028 1251 aaPredicted RBP7.86□□□□□ -1.15
USF3-204ENST00000496826 CANXP27824 592 aaKnown RBP7.84□□□□□ -1.15
USF3-204ENST00000496826 PTMSP20962 102 aa7.84□□□□□ -1.15
USF3-204ENST00000496826 ANP32AP39687 249 aaKnown RBP7.83□□□□□ -1.16
USF3-204ENST00000496826 GOLGA6L1Q8N7Z2 621 aa7.83□□□□□ -1.16
USF3-204ENST00000496826 ANO8Q9HCE9 1232 aaPredicted RBP7.82□□□□□ -1.16
USF3-204ENST00000496826 ZNF326Q5BKZ1 582 aaKnown RBP7.82□□□□□ -1.16
USF3-204ENST00000496826 NPM2Q86SE8 214 aaKnown RBP7.82□□□□□ -1.16
USF3-204ENST00000496826 CHAF1AQ13111 956 aaPredicted RBP7.81□□□□□ -1.16
USF3-204ENST00000496826 ERICH6BQ5W0A0 696 aa7.81□□□□□ -1.16
USF3-204ENST00000496826 PNNQ9H307 717 aaKnown RBP7.79□□□□□ -1.16
USF3-204ENST00000496826 KIAA2012Q0VF49 1180 aa7.79□□□□□ -1.16
USF3-204ENST00000496826 CSRNP3Q8WYN3 585 aa7.77□□□□□ -1.17
USF3-204ENST00000496826 GOLGA6L4A6NEF3 574 aa7.76□□□□□ -1.17
USF3-204ENST00000496826 PRM3Q9NNZ6 103 aa7.76□□□□□ -1.17
USF3-204ENST00000496826 SEPT11Q9NVA2 429 aaKnown RBP7.74□□□□□ -1.17
USF3-204ENST00000496826 STK11IPQ8N1F8 1099 aa7.73□□□□□ -1.17
USF3-204ENST00000496826 ARID4BQ4LE39 1312 aaPredicted RBP7.73□□□□□ -1.17
USF3-204ENST00000496826 SETQ01105 290 aaPredicted RBP7.73□□□□□ -1.17
USF3-204ENST00000496826 PCGF6Q9BYE7 350 aa7.73□□□□□ -1.17
USF3-204ENST00000496826 RRP12Q5JTH9 1297 aaKnown RBP7.7□□□□□ -1.18
USF3-204ENST00000496826 HMGB1P09429 215 aaKnown RBP7.7□□□□□ -1.18
USF3-204ENST00000496826 GOLGA6L2Q8N9W4 650 aaPredicted RBP7.7□□□□□ -1.18
USF3-204ENST00000496826 HMGB1P1B2RPK0 211 aaPredicted RBP7.69□□□□□ -1.18
USF3-204ENST00000496826 ANP32CO43423 234 aa7.69□□□□□ -1.18
USF3-204ENST00000496826 MYH16Q9H6N6 1097 aa7.67□□□□□ -1.18
USF3-204ENST00000496826 NOC3LQ8WTT2 800 aaKnown RBP7.67□□□□□ -1.18
USF3-204ENST00000496826 FKBP8Q14318 412 aa7.67□□□□□ -1.18
USF3-204ENST00000496826 EIF4G2P78344 907 aaKnown RBP eCLIP7.65□□□□□ -1.18
USF3-204ENST00000496826 A0A0U1RQG5 324 aaPredicted RBP7.65□□□□□ -1.18
USF3-204ENST00000496826 HMMRO75330 724 aa7.64□□□□□ -1.19
USF3-204ENST00000496826 BCL11AQ9H165 835 aa7.64□□□□□ -1.19
USF3-204ENST00000496826 CHMP4BQ9H444 224 aaKnown RBP7.64□□□□□ -1.19
USF3-204ENST00000496826 CCDC34Q96HJ3 373 aa7.63□□□□□ -1.19
USF3-204ENST00000496826 ABCF1Q8NE71 845 aaKnown RBP eCLIP7.63□□□□□ -1.19
USF3-204ENST00000496826 GOLGA2Q08379 1002 aa7.62□□□□□ -1.19
USF3-204ENST00000496826 ESF1Q9H501 851 aaKnown RBP7.62□□□□□ -1.19
USF3-204ENST00000496826 PPP4R2Q9NY27 417 aa7.62□□□□□ -1.19
USF3-204ENST00000496826 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP7.62□□□□□ -1.19
USF3-204ENST00000496826 HNRNPUL2Q1KMD3 747 aaKnown RBP7.62□□□□□ -1.19
USF3-204ENST00000496826 CASC1Q6TDU7 716 aa7.61□□□□□ -1.19
USF3-204ENST00000496826 TNNT3P45378 269 aaPredicted RBP7.61□□□□□ -1.19
USF3-204ENST00000496826 BECN1Q14457 450 aa7.61□□□□□ -1.19
USF3-204ENST00000496826 CEP89Q96ST8 783 aa7.6□□□□□ -1.19
USF3-204ENST00000496826 HSP90B1P14625 803 aaKnown RBP7.6□□□□□ -1.19
USF3-204ENST00000496826 UBTFP17480 764 aaKnown RBP7.6□□□□□ -1.19
USF3-204ENST00000496826 NEFHP12036 1026 aa7.59□□□□□ -1.19
USF3-204ENST00000496826 PTMAP06454 111 aaKnown RBP7.59□□□□□ -1.19
USF3-204ENST00000496826 CCDC136Q96JN2 1154 aa7.59□□□□□ -1.19
USF3-204ENST00000496826 DNTTIP2Q5QJE6 756 aaKnown RBP7.58□□□□□ -1.2
USF3-204ENST00000496826 CFAP44Q96MT7 982 aa7.58□□□□□ -1.2
USF3-204ENST00000496826 BCANQ96GW7 911 aa7.58□□□□□ -1.2
Retrieved 100 of 20,778 RNA–protein pairs in 13.3 ms