RNA–Protein interactions for RNA: YDR498C

SEC20, Transcript of Membrane glycoprotein v-SNARE, yeast

Gene SEC20, Length 1,152 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

RNA		Protein				Prediction (catRAPID)		Interaction (RIP-Chip)
Gene	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	Detected Interaction
SEC20	YDR498C	TPO2	P53283	614 aa		6.12	□□□□□ -1.43
SEC20	YDR498C	SVF1	Q05515	481 aa		6.12	□□□□□ -1.43
SEC20	YDR498C	TSR1	Q07381	788 aa	Known RBP	6.12	□□□□□ -1.43
SEC20	YDR498C	IWR1	Q07532	353 aa	Predicted RBP	6.12	□□□□□ -1.43
SEC20	YDR498C	YOR223W	Q12015	292 aa		6.12	□□□□□ -1.43
SEC20	YDR498C	YLL058W	Q12198	575 aa		6.12	□□□□□ -1.43
SEC20	YDR498C	GIS3	Q12418	502 aa		6.12	□□□□□ -1.43
SEC20	YDR498C	ECM3	Q99252	613 aa		6.12	□□□□□ -1.43
SEC20	YDR498C	BI3	Q9ZZW7	517 aa		6.12	□□□□□ -1.43
SEC20	YDR498C	YLR462W	O13556	202 aa		6.11	□□□□□ -1.43
SEC20	YDR498C	TRM1	P15565	570 aa	Known RBP	6.11	□□□□□ -1.43
SEC20	YDR498C	PRE10	P21242	288 aa	Known RBP RIP-Chip data	6.11	□□□□□ -1.43	not detected
SEC20	YDR498C	DPH2	P32461	534 aa		6.11	□□□□□ -1.43
SEC20	YDR498C	GCD6	P32501	712 aa	Known RBP	6.11	□□□□□ -1.43
SEC20	YDR498C	SWI3	P32591	825 aa		6.11	□□□□□ -1.43
SEC20	YDR498C	RGT1	P32862	1170 aa		6.11	□□□□□ -1.43
SEC20	YDR498C	SMY2	P32909	740 aa	Known RBP	6.11	□□□□□ -1.43
SEC20	YDR498C	VPS35	P34110	944 aa		6.11	□□□□□ -1.43
SEC20	YDR498C	BLI1	P35727	113 aa		6.11	□□□□□ -1.43
SEC20	YDR498C	LAS1	P36146	502 aa	Predicted RBP	6.11	□□□□□ -1.43
SEC20	YDR498C	RRT2	P38332	387 aa		6.11	□□□□□ -1.43
SEC20	YDR498C	BSD2	P38356	321 aa		6.11	□□□□□ -1.43
SEC20	YDR498C	MMS21	P38632	267 aa		6.11	□□□□□ -1.43
SEC20	YDR498C	YHL049C	P38722	271 aa		6.11	□□□□□ -1.43
SEC20	YDR498C	YEL075C	P39972	122 aa		6.11	□□□□□ -1.43
SEC20	YDR498C	YER189W	P40104	122 aa		6.11	□□□□□ -1.43
SEC20	YDR498C	YTA12	P40341	825 aa		6.11	□□□□□ -1.43
SEC20	YDR498C	MAD1	P40957	749 aa		6.11	□□□□□ -1.43
SEC20	YDR498C	YFL064C	P43540	174 aa		6.11	□□□□□ -1.43
SEC20	YDR498C	SMC3	P47037	1230 aa		6.11	□□□□□ -1.43
SEC20	YDR498C	ACF4	P47129	309 aa		6.11	□□□□□ -1.43
SEC20	YDR498C	YMR187C	Q03236	431 aa		6.11	□□□□□ -1.43
SEC20	YDR498C	ECM7	Q06200	448 aa		6.11	□□□□□ -1.43
SEC20	YDR498C	SHS1	Q07657	551 aa		6.11	□□□□□ -1.43
SEC20	YDR498C	YBL111C	Q3E7Y5	667 aa		6.11	□□□□□ -1.43
SEC20	YDR498C	SNF1	P06782	633 aa	Known RBP	6.1	□□□□□ -1.43
SEC20	YDR498C	SEC21	P32074	935 aa	Known RBP	6.1	□□□□□ -1.43
SEC20	YDR498C	HIS2	P38635	335 aa		6.1	□□□□□ -1.43
SEC20	YDR498C	DYS1	P38791	387 aa		6.1	□□□□□ -1.43
SEC20	YDR498C	END3	P39013	349 aa		6.1	□□□□□ -1.43
SEC20	YDR498C	KAP123	P40069	1113 aa	Known RBP	6.1	□□□□□ -1.43
SEC20	YDR498C	PSP2	P50109	593 aa	Known RBP	6.1	□□□□□ -1.43
SEC20	YDR498C	YGR111W	P53265	400 aa		6.1	□□□□□ -1.43
SEC20	YDR498C	YAF9	P53930	226 aa		6.1	□□□□□ -1.43
SEC20	YDR498C	RPA49	Q01080	415 aa	Predicted RBP	6.1	□□□□□ -1.43
SEC20	YDR498C	CEF1	Q03654	590 aa	Predicted RBP	6.1	□□□□□ -1.43
SEC20	YDR498C	SNU56	Q03782	492 aa	Known RBP	6.1	□□□□□ -1.43
SEC20	YDR498C	ABP140	Q08641	628 aa	Known RBP	6.1	□□□□□ -1.43
SEC20	YDR498C	ARG4	P04076	463 aa	Predicted RBP	6.09	□□□□□ -1.43
SEC20	YDR498C	RPS3	P05750	240 aa	Known RBP	6.09	□□□□□ -1.43
SEC20	YDR498C	RAD1	P06777	1100 aa		6.09	□□□□□ -1.43
SEC20	YDR498C	COX11	P19516	300 aa	Known RBP	6.09	□□□□□ -1.43
SEC20	YDR498C	CBF2	P32504	956 aa		6.09	□□□□□ -1.43
SEC20	YDR498C	PBP2	P38151	413 aa	Known RBP RIP-Chip data	6.09	□□□□□ -1.43	not detected
SEC20	YDR498C	AFG3	P39925	761 aa		6.09	□□□□□ -1.43
SEC20	YDR498C	SPR3	P41901	512 aa		6.09	□□□□□ -1.43
SEC20	YDR498C	ATG36	P46983	293 aa		6.09	□□□□□ -1.43
SEC20	YDR498C	YJR079W	P47126	109 aa		6.09	□□□□□ -1.43
SEC20	YDR498C	KXD1	P53158	218 aa		6.09	□□□□□ -1.43
SEC20	YDR498C	MDR1	P53258	950 aa		6.09	□□□□□ -1.43
SEC20	YDR498C	BRE5	P53741	515 aa	Known RBP	6.09	□□□□□ -1.43
SEC20	YDR498C	TY3A-G	Q12173	290 aa		6.09	□□□□□ -1.43
SEC20	YDR498C	ATG11	Q12527	1178 aa		6.09	□□□□□ -1.43
SEC20	YDR498C	TY3A-I	Q99219	290 aa		6.09	□□□□□ -1.43
SEC20	YDR498C	ASP3-2	P0CX77	362 aa		6.08	□□□□□ -1.44
SEC20	YDR498C	ASP3-3	P0CX78	362 aa		6.08	□□□□□ -1.44
SEC20	YDR498C	ASP3-4	P0CX79	362 aa		6.08	□□□□□ -1.44
SEC20	YDR498C	ASP3-1	P0CZ17	362 aa		6.08	□□□□□ -1.44
SEC20	YDR498C	GYP6	P32806	458 aa		6.08	□□□□□ -1.44
SEC20	YDR498C	MRP4	P32902	394 aa		6.08	□□□□□ -1.44
SEC20	YDR498C	YBL055C	P34220	418 aa	Predicted RBP	6.08	□□□□□ -1.44
SEC20	YDR498C	MMS4	P38257	691 aa		6.08	□□□□□ -1.44
SEC20	YDR498C	SAH1	P39954	449 aa	Known RBP	6.08	□□□□□ -1.44
SEC20	YDR498C	FTR1	P40088	404 aa		6.08	□□□□□ -1.44
SEC20	YDR498C	RPC17	P47076	161 aa		6.08	□□□□□ -1.44
SEC20	YDR498C	UFO1	Q04511	668 aa		6.08	□□□□□ -1.44
SEC20	YDR498C	YLR225C	Q05948	407 aa	Known RBP	6.08	□□□□□ -1.44
SEC20	YDR498C	ACM1	Q08981	209 aa		6.08	□□□□□ -1.44
SEC20	YDR498C	AIM41	Q12032	185 aa		6.08	□□□□□ -1.44
SEC20	YDR498C	OSW2	Q12202	724 aa		6.08	□□□□□ -1.44
SEC20	YDR498C	CDC8	P00572	216 aa		6.07	□□□□□ -1.44
SEC20	YDR498C	ADE4	P04046	510 aa	Known RBP	6.07	□□□□□ -1.44
SEC20	YDR498C	ADE3	P07245	946 aa	Known RBP	6.07	□□□□□ -1.44
SEC20	YDR498C	KAR3	P17119	729 aa		6.07	□□□□□ -1.44
SEC20	YDR498C	GLN3	P18494	730 aa		6.07	□□□□□ -1.44
SEC20	YDR498C	SFL1	P20134	766 aa		6.07	□□□□□ -1.44
SEC20	YDR498C	PRR1	P28708	518 aa		6.07	□□□□□ -1.44
SEC20	YDR498C	AGP2	P38090	596 aa		6.07	□□□□□ -1.44
SEC20	YDR498C	CBR1	P38626	284 aa	Known RBP	6.07	□□□□□ -1.44
SEC20	YDR498C	VPS41	P38959	992 aa		6.07	□□□□□ -1.44
SEC20	YDR498C	MXR1	P40029	184 aa		6.07	□□□□□ -1.44
SEC20	YDR498C	MKT1	P40850	830 aa	Known RBP	6.07	□□□□□ -1.44
SEC20	YDR498C	SBE2	P42223	864 aa	Known RBP	6.07	□□□□□ -1.44
SEC20	YDR498C	SCD6	P45978	349 aa	Known RBP RIP-Chip data	6.07	□□□□□ -1.44	RIP-Chip
SEC20	YDR498C	ALY2	P47029	1046 aa		6.07	□□□□□ -1.44
SEC20	YDR498C	YJL045W	P47052	634 aa		6.07	□□□□□ -1.44
SEC20	YDR498C	RSM26	P47141	266 aa		6.07	□□□□□ -1.44
SEC20	YDR498C	SHE10	P53075	577 aa		6.07	□□□□□ -1.44
SEC20	YDR498C	ATG1	P53104	897 aa		6.07	□□□□□ -1.44
SEC20	YDR498C	DRN1	P53255	507 aa	Known RBP	6.07	□□□□□ -1.44

Retrieved 100 of 5,963 RNA–protein pairs in 54.8 ms