RNA–Protein interactions for RNA: ENST00000254667.7

PTPRE-201, Transcript of protein tyrosine phosphatase, receptor type E, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene PTPRE, Length 5,331 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRE-201ENST00000254667 NAA40Q86UY6 237 aa17.13■□□□□ 0.33
PTPRE-201ENST00000254667 WFDC8Q8IUA0 241 aa17.13■□□□□ 0.33
PTPRE-201ENST00000254667 ARHGEF39Q8N4T4 335 aa17.13■□□□□ 0.33
PTPRE-201ENST00000254667 TMEM217Q8N7C4 229 aa17.13■□□□□ 0.33
PTPRE-201ENST00000254667 PP6455Q8WZ26 134 aa17.13■□□□□ 0.33
PTPRE-201ENST00000254667 APOBEC3DQ96AK3 386 aaPredicted RBP17.13■□□□□ 0.33
PTPRE-201ENST00000254667 ARSGQ96EG1 525 aa17.13■□□□□ 0.33
PTPRE-201ENST00000254667 MMP25Q9NPA2 562 aa17.13■□□□□ 0.33
PTPRE-201ENST00000254667 HIF1ANQ9NWT6 349 aa17.13■□□□□ 0.33
PTPRE-201ENST00000254667 TMEM235A6NFC5 223 aa17.12■□□□□ 0.33
PTPRE-201ENST00000254667 TERTO14746 1132 aaKnown RBP17.12■□□□□ 0.33
PTPRE-201ENST00000254667 KISS1RQ969F8 398 aaPredicted RBP17.12■□□□□ 0.33
PTPRE-201ENST00000254667 GPATCH2Q9NW75 528 aa17.12■□□□□ 0.33
PTPRE-201ENST00000254667 P4HTMQ9NXG6 502 aa17.12■□□□□ 0.33
PTPRE-201ENST00000254667 TAAR5O14804 337 aa17.12■□□□□ 0.33
PTPRE-201ENST00000254667 INSM1Q01101 510 aaPredicted RBP17.12■□□□□ 0.33
PTPRE-201ENST00000254667 SLC7A5P1Q8MH63 180 aa17.12■□□□□ 0.33
PTPRE-201ENST00000254667 ROBO4Q8WZ75 1007 aa17.12■□□□□ 0.33
PTPRE-201ENST00000254667 FOXJ3Q9UPW0 622 aa17.12■□□□□ 0.33
PTPRE-201ENST00000254667 ZNF121P58317 390 aaPredicted RBP17.12■□□□□ 0.33
PTPRE-201ENST00000254667 C1orf210Q8IVY1 113 aa17.12■□□□□ 0.33
PTPRE-201ENST00000254667 HSD17B11Q8NBQ5 300 aa17.12■□□□□ 0.33
PTPRE-201ENST00000254667 LFNGQ8NES3 379 aa17.12■□□□□ 0.33
PTPRE-201ENST00000254667 FOXB1Q99853 325 aa17.12■□□□□ 0.33
PTPRE-201ENST00000254667 TRGV5A0A0B4J1U4 118 aa17.12■□□□□ 0.33
PTPRE-201ENST00000254667 HOXD12P35452 270 aa17.12■□□□□ 0.33
PTPRE-201ENST00000254667 PRICKLE4Q2TBC4 344 aa17.12■□□□□ 0.33
PTPRE-201ENST00000254667 ZNF626Q68DY1 528 aa17.12■□□□□ 0.33
PTPRE-201ENST00000254667 CMTM4Q8IZR5 234 aa17.12■□□□□ 0.33
PTPRE-201ENST00000254667 TCEAL7Q9BRU2 100 aa17.12■□□□□ 0.33
PTPRE-201ENST00000254667 ARV1Q9H2C2 271 aa17.12■□□□□ 0.33
PTPRE-201ENST00000254667 FLVCR1Q9Y5Y0 555 aa17.12■□□□□ 0.33
PTPRE-201ENST00000254667 CNIH1O95406 144 aa17.11■□□□□ 0.33
PTPRE-201ENST00000254667 FUT6P51993 359 aa17.11■□□□□ 0.33
PTPRE-201ENST00000254667 ANKRD37Q7Z713 158 aa17.11■□□□□ 0.33
PTPRE-201ENST00000254667 SUMF1Q8NBK3 374 aa17.11■□□□□ 0.33
PTPRE-201ENST00000254667 OTOSQ8NHW6 89 aa17.11■□□□□ 0.33
PTPRE-201ENST00000254667 OR8B4Q96RC9 309 aa17.11■□□□□ 0.33
PTPRE-201ENST00000254667 CACFD1Q9UGQ2 172 aa17.11■□□□□ 0.33
PTPRE-201ENST00000254667 MEIKINA0A087WXM9 373 aa17.11■□□□□ 0.33
PTPRE-201ENST00000254667 ASPDHA6ND91 283 aa17.11■□□□□ 0.33
PTPRE-201ENST00000254667 SIRPB1O00241 398 aa17.11■□□□□ 0.33
PTPRE-201ENST00000254667 GPR12P47775 334 aa17.11■□□□□ 0.33
PTPRE-201ENST00000254667 CEACAM16Q2WEN9 425 aa17.11■□□□□ 0.33
PTPRE-201ENST00000254667 JMJD6Q6NYC1 403 aaPredicted RBP17.11■□□□□ 0.33
PTPRE-201ENST00000254667 KTI12Q96EK9 354 aaPredicted RBP17.11■□□□□ 0.33
PTPRE-201ENST00000254667 ZNF764Q96H86 408 aaPredicted RBP17.11■□□□□ 0.33
PTPRE-201ENST00000254667 RAB19A4D1S5 217 aa17.11■□□□□ 0.33
PTPRE-201ENST00000254667 LALBAP00709 142 aa17.11■□□□□ 0.33
PTPRE-201ENST00000254667 ZNF117Q03924 483 aa17.11■□□□□ 0.33
PTPRE-201ENST00000254667 SSPNQ14714 243 aa17.11■□□□□ 0.33
PTPRE-201ENST00000254667 RNPS1Q15287 305 aaKnown RBP17.11■□□□□ 0.33
PTPRE-201ENST00000254667 SOHLH1Q5JUK2 328 aa17.11■□□□□ 0.33
PTPRE-201ENST00000254667 S1PR3Q99500 378 aa17.11■□□□□ 0.33
PTPRE-201ENST00000254667 NTN4Q9HB63 628 aa17.11■□□□□ 0.33
PTPRE-201ENST00000254667 TRGV8A0A0C4DH27 118 aa17.11■□□□□ 0.33
PTPRE-201ENST00000254667 ADH4P08319 380 aa17.11■□□□□ 0.33
PTPRE-201ENST00000254667 HLA-DOBP13765 273 aa17.11■□□□□ 0.33
PTPRE-201ENST00000254667 RPS27P42677 84 aaKnown RBP17.11■□□□□ 0.33
PTPRE-201ENST00000254667 ANKRD16Q6P6B7 361 aa17.11■□□□□ 0.33
PTPRE-201ENST00000254667 OR11G2Q8NGC1 345 aa17.11■□□□□ 0.33
PTPRE-201ENST00000254667 RDH5Q92781 318 aa17.11■□□□□ 0.33
PTPRE-201ENST00000254667 HPNP05981 417 aa17.11■□□□□ 0.33
PTPRE-201ENST00000254667 EID2BQ96D98 161 aa17.11■□□□□ 0.33
PTPRE-201ENST00000254667 C12orf10Q9HB07 376 aa17.11■□□□□ 0.33
PTPRE-201ENST00000254667 DLL4Q9NR61 685 aa17.11■□□□□ 0.33
PTPRE-201ENST00000254667 LIN7CQ9NUP9 197 aaKnown RBP17.11■□□□□ 0.33
PTPRE-201ENST00000254667 SIGLEC7Q9Y286 467 aa17.11■□□□□ 0.33
PTPRE-201ENST00000254667 OR2W5A6NFC9 320 aa17.1■□□□□ 0.33
PTPRE-201ENST00000254667 ZNF547Q8IVP9 402 aa17.1■□□□□ 0.33
PTPRE-201ENST00000254667 OR13C5Q8NGS8 318 aa17.1■□□□□ 0.33
PTPRE-201ENST00000254667 SCARB1Q8WTV0 552 aa17.1■□□□□ 0.33
PTPRE-201ENST00000254667 ZDHHC19Q8WVZ1 309 aaPredicted RBP17.1■□□□□ 0.33
PTPRE-201ENST00000254667 ZNF391Q9UJN7 358 aa17.1■□□□□ 0.33
PTPRE-201ENST00000254667 APEHP13798 732 aaKnown RBP17.1■□□□□ 0.33
PTPRE-201ENST00000254667 RFC3P40938 356 aa17.1■□□□□ 0.33
PTPRE-201ENST00000254667 PSMB3P49720 205 aa17.1■□□□□ 0.33
PTPRE-201ENST00000254667 RAB13P51153 203 aa17.1■□□□□ 0.33
PTPRE-201ENST00000254667 C21orf58P58505 322 aa17.1■□□□□ 0.33
PTPRE-201ENST00000254667 RTL8BQ17RB0 113 aa17.1■□□□□ 0.33
PTPRE-201ENST00000254667 TMUB2Q71RG4 321 aa17.1■□□□□ 0.33
PTPRE-201ENST00000254667 ZNF705FA8MVS1 300 aaPredicted RBP17.1■□□□□ 0.33
PTPRE-201ENST00000254667 ALG1L2C9J202 215 aa17.1■□□□□ 0.33
PTPRE-201ENST00000254667 MAGEB4O15481 346 aaPredicted RBP17.1■□□□□ 0.33
PTPRE-201ENST00000254667 FAM157BP0CG42 384 aa17.1■□□□□ 0.33
PTPRE-201ENST00000254667 ZNF705DP0CH99 300 aaPredicted RBP17.1■□□□□ 0.33
PTPRE-201ENST00000254667 ZNF705BP0CI00 300 aaPredicted RBP17.1■□□□□ 0.33
PTPRE-201ENST00000254667 AGFG1P52594 562 aaKnown RBP17.1■□□□□ 0.33
PTPRE-201ENST00000254667 MYBPHQ13203 477 aa17.1■□□□□ 0.33
PTPRE-201ENST00000254667 SCGB2A2Q13296 93 aa17.1■□□□□ 0.33
PTPRE-201ENST00000254667 PNLIPRP3Q17RR3 467 aa17.1■□□□□ 0.33
PTPRE-201ENST00000254667 OR10R2Q8NGX6 335 aa17.1■□□□□ 0.33
PTPRE-201ENST00000254667 C3orf49Q96BT1 292 aa17.1■□□□□ 0.33
PTPRE-201ENST00000254667 PUS1Q9Y606 427 aaKnown RBP eCLIP17.1■□□□□ 0.332e-6■■■■■ 28.9
PTPRE-201ENST00000254667 OR2F2O95006 317 aa17.1■□□□□ 0.33
PTPRE-201ENST00000254667 OR2F1Q13607 317 aa17.1■□□□□ 0.33
PTPRE-201ENST00000254667 HPSE2Q8WWQ2 592 aa17.1■□□□□ 0.33
PTPRE-201ENST00000254667 SLC6A13Q9NSD5 602 aa17.1■□□□□ 0.33
PTPRE-201ENST00000254667 ARPC3O15145 178 aa17.09■□□□□ 0.33
PTPRE-201ENST00000254667 ATF1P18846 271 aa17.09■□□□□ 0.33
Retrieved 100 of 20,778 RNA–protein pairs in 46.7 ms