RNA–Protein interactions for RNA: YMR309C

NIP1, Transcript of eIF3c subunit of the eukaryotic translation initiation factor 3 (eIF3), yeast

Gene NIP1, Length 2,439 nt, Biotype protein coding.

RNA		Protein				Prediction (catRAPID)		Interaction (RIP-Chip)
Gene	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	Detected Interaction
NIP1	YMR309C	NOP7	P53261	605 aa	Known RBP	0.93	□□□□□ -2.26
NIP1	YMR309C	YGR125W	P53273	1036 aa		0.93	□□□□□ -2.26
NIP1	YMR309C	DUS1	P53759	423 aa	Known RBP	0.93	□□□□□ -2.26
NIP1	YMR309C	MPS1	P54199	764 aa		0.93	□□□□□ -2.26
NIP1	YMR309C	TGL5	Q12043	749 aa		0.93	□□□□□ -2.26
NIP1	YMR309C	YOR022C	Q12204	715 aa		0.93	□□□□□ -2.26
NIP1	YMR309C	PGK1	P00560	416 aa	Known RBP	0.93	□□□□□ -2.26
NIP1	YMR309C	PYC1	P11154	1178 aa	Known RBP	0.93	□□□□□ -2.26
NIP1	YMR309C	TOP3	P13099	656 aa		0.93	□□□□□ -2.26
NIP1	YMR309C	MSD1	P15179	658 aa	Known RBP	0.93	□□□□□ -2.26
NIP1	YMR309C	RPL8B	P29453	256 aa	Known RBP	0.93	□□□□□ -2.26
NIP1	YMR309C	HBS1	P32769	611 aa	Known RBP	0.93	□□□□□ -2.26
NIP1	YMR309C	PET10	P36139	283 aa		0.93	□□□□□ -2.26
NIP1	YMR309C	PFA3	P42836	336 aa		0.93	□□□□□ -2.26
NIP1	YMR309C	YBP2	P53169	641 aa		0.93	□□□□□ -2.26
NIP1	YMR309C	YDR514C	Q04408	483 aa		0.93	□□□□□ -2.26
NIP1	YMR309C	TDA9	Q04545	1251 aa		0.93	□□□□□ -2.26
NIP1	YMR309C	REH1	Q06709	432 aa		0.93	□□□□□ -2.26
NIP1	YMR309C	HBN1	Q96VH4	193 aa		0.93	□□□□□ -2.26
NIP1	YMR309C	CIT1	P00890	479 aa		0.92	□□□□□ -2.26
NIP1	YMR309C	PHR1	P05066	565 aa	Known RBP RIP-Chip data	0.92	□□□□□ -2.26	not detected
NIP1	YMR309C	REV7	P38927	245 aa		0.92	□□□□□ -2.26
NIP1	YMR309C	ECM1	P39715	212 aa		0.92	□□□□□ -2.26
NIP1	YMR309C	CTR1	P49573	406 aa		0.92	□□□□□ -2.26
NIP1	YMR309C	TAD1	P53065	400 aa		0.92	□□□□□ -2.26
NIP1	YMR309C	UTP8	P53276	713 aa	Known RBP	0.92	□□□□□ -2.26
NIP1	YMR309C	ATG4	P53867	494 aa		0.92	□□□□□ -2.26
NIP1	YMR309C	YPL068C	Q02749	293 aa		0.92	□□□□□ -2.26
NIP1	YMR309C	ENV7	Q12003	364 aa		0.92	□□□□□ -2.26
NIP1	YMR309C	HAL9	Q12180	1030 aa		0.92	□□□□□ -2.26
NIP1	YMR309C	GPR1	Q12361	961 aa		0.92	□□□□□ -2.26
NIP1	YMR309C	YLR149C	Q99296	730 aa		0.92	□□□□□ -2.26
NIP1	YMR309C	DIF1	O13577	133 aa		0.91	□□□□□ -2.26
NIP1	YMR309C	GAL11	P19659	1081 aa		0.91	□□□□□ -2.26
NIP1	YMR309C	EMC3	P36039	253 aa		0.91	□□□□□ -2.26
NIP1	YMR309C	YBR259W	P38338	688 aa		0.91	□□□□□ -2.26
NIP1	YMR309C	MUP3	P38734	546 aa		0.91	□□□□□ -2.26
NIP1	YMR309C	SET5	P38890	526 aa	Known RBP	0.91	□□□□□ -2.26
NIP1	YMR309C	CCT3	P39077	534 aa	Known RBP	0.91	□□□□□ -2.26
NIP1	YMR309C	MEP2	P41948	499 aa		0.91	□□□□□ -2.26
NIP1	YMR309C	PFD1	P46988	109 aa		0.91	□□□□□ -2.26
NIP1	YMR309C	ZDS1	P50111	915 aa	Known RBP	0.91	□□□□□ -2.26
NIP1	YMR309C	SLK19	Q08581	821 aa	Known RBP	0.91	□□□□□ -2.26
NIP1	YMR309C	SSF2	Q12153	453 aa	Predicted RBP	0.91	□□□□□ -2.26
NIP1	YMR309C	YKL033W-A	Q86ZR7	236 aa		0.91	□□□□□ -2.26
NIP1	YMR309C	STE4	P18851	423 aa		0.91	□□□□□ -2.26
NIP1	YMR309C	YCL002C	P25565	263 aa		0.91	□□□□□ -2.26
NIP1	YMR309C	PER1	P25625	357 aa		0.91	□□□□□ -2.26
NIP1	YMR309C	APT2	P36973	181 aa		0.91	□□□□□ -2.26
NIP1	YMR309C	UBP6	P43593	499 aa	Known RBP	0.91	□□□□□ -2.26
NIP1	YMR309C	ALG2	P43636	503 aa		0.91	□□□□□ -2.26
NIP1	YMR309C	ALY2	P47029	1046 aa		0.91	□□□□□ -2.26
NIP1	YMR309C	UBC9	P50623	157 aa	Predicted RBP	0.91	□□□□□ -2.26
NIP1	YMR309C	FHN1	P53279	174 aa		0.91	□□□□□ -2.26
NIP1	YMR309C	TEX1	P53851	422 aa	Known RBP	0.91	□□□□□ -2.26
NIP1	YMR309C	LRS4	Q04087	347 aa	Known RBP	0.91	□□□□□ -2.26
NIP1	YMR309C	GAD1	Q04792	585 aa		0.91	□□□□□ -2.26
NIP1	YMR309C	THI21	Q08975	551 aa		0.91	□□□□□ -2.26
NIP1	YMR309C	YOR131C	Q12486	218 aa		0.91	□□□□□ -2.26
NIP1	YMR309C	PAM1	P37304	830 aa	Known RBP	0.9	□□□□□ -2.26
NIP1	YMR309C	XBP1	P40489	647 aa		0.9	□□□□□ -2.26
NIP1	YMR309C	RLP7	P40693	322 aa	Known RBP	0.9	□□□□□ -2.26
NIP1	YMR309C	YFL052W	P43551	465 aa		0.9	□□□□□ -2.26
NIP1	YMR309C	ORC4	P54791	529 aa		0.9	□□□□□ -2.26
NIP1	YMR309C	GEP3	Q08622	556 aa		0.9	□□□□□ -2.26
NIP1	YMR309C	MET7	Q08645	548 aa		0.9	□□□□□ -2.26
NIP1	YMR309C	FLC1	Q08967	793 aa		0.9	□□□□□ -2.26
NIP1	YMR309C	CDC53	Q12018	815 aa	Known RBP	0.9	□□□□□ -2.26
NIP1	YMR309C	MLH3	Q12083	715 aa		0.9	□□□□□ -2.26
NIP1	YMR309C	ERG11	P10614	530 aa		0.9	□□□□□ -2.27
NIP1	YMR309C	CCR4	P31384	837 aa	Known RBP	0.9	□□□□□ -2.27
NIP1	YMR309C	MVD1	P32377	396 aa	Known RBP	0.9	□□□□□ -2.27
NIP1	YMR309C	SPC29	P33419	253 aa		0.9	□□□□□ -2.27
NIP1	YMR309C	RPN10	P38886	268 aa	Known RBP	0.9	□□□□□ -2.27
NIP1	YMR309C	GYP8	P43570	497 aa		0.9	□□□□□ -2.27
NIP1	YMR309C	YJL049W	P47048	450 aa		0.9	□□□□□ -2.27
NIP1	YMR309C	PRP31	P49704	494 aa	Predicted RBP	0.9	□□□□□ -2.27
NIP1	YMR309C	PAN2	P53010	1115 aa	Predicted RBP	0.9	□□□□□ -2.27
NIP1	YMR309C	HUL5	P53119	910 aa		0.9	□□□□□ -2.27
NIP1	YMR309C	COX18	P53239	316 aa		0.9	□□□□□ -2.27
NIP1	YMR309C	YGR283C	P53336	341 aa	Predicted RBP	0.9	□□□□□ -2.27
NIP1	YMR309C	APN1	P22936	367 aa		0.89	□□□□□ -2.27
NIP1	YMR309C	MBR1	P23493	339 aa		0.89	□□□□□ -2.27
NIP1	YMR309C	SFB3	P38810	929 aa		0.89	□□□□□ -2.27
NIP1	YMR309C	FMO1	P38866	432 aa		0.89	□□□□□ -2.27
NIP1	YMR309C	LYS9	P38999	446 aa		0.89	□□□□□ -2.27
NIP1	YMR309C	RSP5	P39940	809 aa	Known RBP	0.89	□□□□□ -2.27
NIP1	YMR309C	ZIP2	P53061	704 aa		0.89	□□□□□ -2.27
NIP1	YMR309C	TAF8	Q03750	510 aa		0.89	□□□□□ -2.27
NIP1	YMR309C	CTK1	Q03957	528 aa	Known RBP	0.89	□□□□□ -2.27
NIP1	YMR309C	CAN1	P04817	590 aa		0.89	□□□□□ -2.27
NIP1	YMR309C	CIT2	P08679	460 aa		0.89	□□□□□ -2.27
NIP1	YMR309C	FUB1	P25659	250 aa		0.89	□□□□□ -2.27
NIP1	YMR309C	PHO11	P35842	467 aa		0.89	□□□□□ -2.27
NIP1	YMR309C	GMH1	P36125	273 aa		0.89	□□□□□ -2.27
NIP1	YMR309C	TRZ1	P36159	838 aa	Predicted RBP	0.89	□□□□□ -2.27
NIP1	YMR309C	PHO12	P38693	467 aa		0.89	□□□□□ -2.27
NIP1	YMR309C	DSS1	P39112	969 aa		0.89	□□□□□ -2.27
NIP1	YMR309C	NUP60	P39705	539 aa		0.89	□□□□□ -2.27
NIP1	YMR309C	CCT5	P40413	562 aa	Known RBP	0.89	□□□□□ -2.27

Retrieved 100 of 5,963 RNA–protein pairs in 23 ms