RNA–Protein interactions for RNA: YKL130C

SHE2, Transcript of RNA-binding protein that binds specific mRNAs and interacts with She3p, yeast

Gene SHE2, Length 741 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

RNA		Protein				Prediction (catRAPID)		Interaction (RIP-Chip)
Gene	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	Detected Interaction
SHE2	YKL130C	ORC2	P32833	620 aa		3.1	□□□□□ -1.91
SHE2	YKL130C	GYP8	P43570	497 aa		3.1	□□□□□ -1.91
SHE2	YKL130C	UBP6	P43593	499 aa	Known RBP	3.1	□□□□□ -1.91
SHE2	YKL130C	RNH70	P53331	553 aa		3.1	□□□□□ -1.91
SHE2	YKL130C	TEX1	P53851	422 aa	Known RBP	3.1	□□□□□ -1.91
SHE2	YKL130C	NAN1	Q02931	896 aa	Known RBP	3.1	□□□□□ -1.91
SHE2	YKL130C	NSE3	Q05541	303 aa		3.1	□□□□□ -1.91
SHE2	YKL130C	MRI1	Q06489	411 aa	Known RBP	3.1	□□□□□ -1.91
SHE2	YKL130C	REH1	Q06709	432 aa		3.1	□□□□□ -1.91
SHE2	YKL130C	SSF2	Q12153	453 aa	Predicted RBP	3.1	□□□□□ -1.91
SHE2	YKL130C	RPN13	O13563	156 aa		3.09	□□□□□ -1.91
SHE2	YKL130C	EMP70	P32802	667 aa		3.09	□□□□□ -1.91
SHE2	YKL130C	PPG1	P32838	368 aa		3.09	□□□□□ -1.91
SHE2	YKL130C	YKL091C	P33324	310 aa	Known RBP	3.09	□□□□□ -1.91
SHE2	YKL130C	GLG1	P36143	616 aa		3.09	□□□□□ -1.91
SHE2	YKL130C	CCT3	P39077	534 aa	Known RBP	3.09	□□□□□ -1.91
SHE2	YKL130C	YEL020C	P39994	560 aa		3.09	□□□□□ -1.91
SHE2	YKL130C	ARG2	P40360	574 aa		3.09	□□□□□ -1.91
SHE2	YKL130C	CTR1	P49573	406 aa		3.09	□□□□□ -1.91
SHE2	YKL130C	YBP2	P53169	641 aa		3.09	□□□□□ -1.91
SHE2	YKL130C	YGR283C	P53336	341 aa	Predicted RBP	3.09	□□□□□ -1.91
SHE2	YKL130C	YDR514C	Q04408	483 aa		3.09	□□□□□ -1.91
SHE2	YKL130C	YDL124W	Q07551	312 aa	Known RBP	3.09	□□□□□ -1.91
SHE2	YKL130C	YOR131C	Q12486	218 aa		3.09	□□□□□ -1.91
SHE2	YKL130C	TOM70	P07213	617 aa	Known RBP	3.08	□□□□□ -1.92
SHE2	YKL130C	PYC1	P11154	1178 aa	Known RBP	3.08	□□□□□ -1.92
SHE2	YKL130C	HSP60	P19882	572 aa	Known RBP	3.08	□□□□□ -1.92
SHE2	YKL130C	MVD1	P32377	396 aa	Known RBP	3.08	□□□□□ -1.92
SHE2	YKL130C	RRP14	P36080	434 aa	Known RBP	3.08	□□□□□ -1.92
SHE2	YKL130C	SFB3	P38810	929 aa		3.08	□□□□□ -1.92
SHE2	YKL130C	FPR3	P38911	411 aa	Known RBP	3.08	□□□□□ -1.92
SHE2	YKL130C	BAP3	P41815	604 aa		3.08	□□□□□ -1.92
SHE2	YKL130C	RPN4	Q03465	531 aa		3.08	□□□□□ -1.92
SHE2	YKL130C	GPR1	Q12361	961 aa		3.08	□□□□□ -1.92
SHE2	YKL130C	YKL033W-A	Q86ZR7	236 aa		3.08	□□□□□ -1.92
SHE2	YKL130C	SPC29	P33419	253 aa		3.07	□□□□□ -1.92
SHE2	YKL130C	BDH2	P39713	417 aa		3.07	□□□□□ -1.92
SHE2	YKL130C	ZDS1	P50111	915 aa	Known RBP	3.07	□□□□□ -1.92
SHE2	YKL130C	PAN2	P53010	1115 aa	Predicted RBP	3.07	□□□□□ -1.92
SHE2	YKL130C	ZIP2	P53061	704 aa		3.07	□□□□□ -1.92
SHE2	YKL130C	CTK1	Q03957	528 aa	Known RBP	3.07	□□□□□ -1.92
SHE2	YKL130C	CDC53	Q12018	815 aa	Known RBP	3.07	□□□□□ -1.92
SHE2	YKL130C	YBR182C-A	Q8TGU6	64 aa		3.07	□□□□□ -1.92
SHE2	YKL130C	DIF1	O13577	133 aa		3.06	□□□□□ -1.92
SHE2	YKL130C	SIR3	P06701	978 aa		3.06	□□□□□ -1.92
SHE2	YKL130C	CIT2	P08679	460 aa		3.06	□□□□□ -1.92
SHE2	YKL130C	HOM2	P13663	365 aa	Known RBP	3.06	□□□□□ -1.92
SHE2	YKL130C	RLP7	P40693	322 aa	Known RBP	3.06	□□□□□ -1.92
SHE2	YKL130C	HUL4	P40985	892 aa		3.06	□□□□□ -1.92
SHE2	YKL130C	YGR125W	P53273	1036 aa		3.06	□□□□□ -1.92
SHE2	YKL130C	MET7	Q08645	548 aa		3.06	□□□□□ -1.92
SHE2	YKL130C	CIT1	P00890	479 aa		3.05	□□□□□ -1.92
SHE2	YKL130C	PHR1	P05066	565 aa	Known RBP RIP-Chip data	3.05	□□□□□ -1.92	not detected
SHE2	YKL130C	RAD4	P14736	754 aa		3.05	□□□□□ -1.92
SHE2	YKL130C	CCR4	P31384	837 aa	Known RBP	3.05	□□□□□ -1.92
SHE2	YKL130C	FMO1	P38866	432 aa		3.05	□□□□□ -1.92
SHE2	YKL130C	ECM1	P39715	212 aa		3.05	□□□□□ -1.92
SHE2	YKL130C	BUD6	P41697	788 aa		3.05	□□□□□ -1.92
SHE2	YKL130C	ALG2	P43636	503 aa		3.05	□□□□□ -1.92
SHE2	YKL130C	PRP31	P49704	494 aa	Predicted RBP	3.05	□□□□□ -1.92
SHE2	YKL130C	UBC9	P50623	157 aa	Predicted RBP	3.05	□□□□□ -1.92
SHE2	YKL130C	MTL1	P53214	551 aa		3.05	□□□□□ -1.92
SHE2	YKL130C	RIM13	Q03792	727 aa		3.05	□□□□□ -1.92
SHE2	YKL130C	VPS34	P22543	875 aa		3.04	□□□□□ -1.92
SHE2	YKL130C	PHO11	P35842	467 aa		3.04	□□□□□ -1.92
SHE2	YKL130C	PBP2	P38151	413 aa	Known RBP RIP-Chip data	3.04	□□□□□ -1.92	not detected
SHE2	YKL130C	UBS1	P38290	277 aa		3.04	□□□□□ -1.92
SHE2	YKL130C	PHO12	P38693	467 aa		3.04	□□□□□ -1.92
SHE2	YKL130C	NUP60	P39705	539 aa		3.04	□□□□□ -1.92
SHE2	YKL130C	TIM54	P47045	478 aa		3.04	□□□□□ -1.92
SHE2	YKL130C	HUL5	P53119	910 aa		3.04	□□□□□ -1.92
SHE2	YKL130C	ALG12	P53730	551 aa		3.04	□□□□□ -1.92
SHE2	YKL130C	ATG4	P53867	494 aa		3.04	□□□□□ -1.92
SHE2	YKL130C	PER1	P25625	357 aa		3.03	□□□□□ -1.92
SHE2	YKL130C	YHR112C	P38716	378 aa		3.03	□□□□□ -1.92
SHE2	YKL130C	PAC2	P39937	518 aa		3.03	□□□□□ -1.92
SHE2	YKL130C	CHZ1	P40019	153 aa	Predicted RBP	3.03	□□□□□ -1.92
SHE2	YKL130C	ALY2	P47029	1046 aa		3.03	□□□□□ -1.92
SHE2	YKL130C	TAF8	Q03750	510 aa		3.03	□□□□□ -1.92
SHE2	YKL130C	POB3	Q04636	552 aa	Known RBP	3.03	□□□□□ -1.92
SHE2	YKL130C	ADE2	P21264	571 aa	Known RBP	3.02	□□□□□ -1.93
SHE2	YKL130C	TRZ1	P36159	838 aa	Predicted RBP	3.02	□□□□□ -1.93
SHE2	YKL130C	APT2	P36973	181 aa		3.02	□□□□□ -1.93
SHE2	YKL130C	HRB1	P38922	454 aa	Known RBP RIP-Chip data	3.02	□□□□□ -1.93	not detected
SHE2	YKL130C	LYS9	P38999	446 aa		3.02	□□□□□ -1.93
SHE2	YKL130C	GAT1	P43574	510 aa		3.02	□□□□□ -1.93
SHE2	YKL130C	FHN1	P53279	174 aa		3.02	□□□□□ -1.93
SHE2	YKL130C	ORC4	P54791	529 aa		3.02	□□□□□ -1.93
SHE2	YKL130C	ATP25	Q03153	612 aa		3.02	□□□□□ -1.93
SHE2	YKL130C	SEG1	Q04279	960 aa		3.02	□□□□□ -1.93
SHE2	YKL130C	UTP14	Q04500	899 aa	Known RBP	3.02	□□□□□ -1.93
SHE2	YKL130C	SLK19	Q08581	821 aa	Known RBP	3.02	□□□□□ -1.93
SHE2	YKL130C	MLH3	Q12083	715 aa		3.02	□□□□□ -1.93
SHE2	YKL130C	ERG11	P10614	530 aa		3.01	□□□□□ -1.93
SHE2	YKL130C	PTP1	P25044	335 aa		3.01	□□□□□ -1.93
SHE2	YKL130C	APL2	P36000	726 aa	Predicted RBP	3.01	□□□□□ -1.93
SHE2	YKL130C	NUP82	P40368	713 aa		3.01	□□□□□ -1.93
SHE2	YKL130C	HXT16	P47185	567 aa		3.01	□□□□□ -1.93
SHE2	YKL130C	YGL081W	P53156	320 aa		3.01	□□□□□ -1.93
SHE2	YKL130C	OSW1	Q08692	278 aa		3.01	□□□□□ -1.93

Retrieved 100 of 5,963 RNA–protein pairs in 15.3 ms