RNA–Protein interactions for RNA: YKL124W

SSH4, Transcript of Specificity factor required for Rsp5p-dependent ubiquitination, yeastyeast

Gene SSH4, Length 1,740 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (RIP-Chip)
Gene Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score Detected Interaction
SSH4YKL124W ZPS1Q12512 249 aa4.83□□□□□ -1.64
SSH4YKL124W HAP2P06774 265 aa4.83□□□□□ -1.64
SSH4YKL124W ATP1P07251 545 aaKnown RBP4.83□□□□□ -1.64
SSH4YKL124W TRX2P22803 104 aaKnown RBP4.83□□□□□ -1.64
SSH4YKL124W MRF1P30775 413 aaPredicted RBP4.83□□□□□ -1.64
SSH4YKL124W RPN12P32496 274 aa4.83□□□□□ -1.64
SSH4YKL124W VPH1P32563 840 aaKnown RBP4.83□□□□□ -1.64
SSH4YKL124W HEL1P36113 551 aa4.83□□□□□ -1.64
SSH4YKL124W HMT1P38074 348 aa4.83□□□□□ -1.64
SSH4YKL124W APM2P38700 605 aa4.83□□□□□ -1.64
SSH4YKL124W BDH2P39713 417 aa4.83□□□□□ -1.64
SSH4YKL124W HUL4P40985 892 aa4.83□□□□□ -1.64
SSH4YKL124W MRI1Q06489 411 aaKnown RBP4.83□□□□□ -1.64
SSH4YKL124W PEX19Q07418 342 aa4.83□□□□□ -1.64
SSH4YKL124W ESC8Q08119 714 aa4.83□□□□□ -1.64
SSH4YKL124W MNL2Q12205 849 aa4.83□□□□□ -1.64
SSH4YKL124W PKH2Q12236 1081 aaKnown RBP4.83□□□□□ -1.64
SSH4YKL124W OSH2Q12451 1283 aa4.83□□□□□ -1.64
SSH4YKL124W MCM1P11746 286 aa4.82□□□□□ -1.64
SSH4YKL124W ELM1P32801 640 aa4.82□□□□□ -1.64
SSH4YKL124W YKT6P36015 200 aaKnown RBP4.82□□□□□ -1.64
SSH4YKL124W RDH54P38086 958 aa4.82□□□□□ -1.64
SSH4YKL124W YHR054CP38780 354 aa4.82□□□□□ -1.64
SSH4YKL124W DJP1P40564 432 aa4.82□□□□□ -1.64
SSH4YKL124W ORC5P50874 479 aa4.82□□□□□ -1.64
SSH4YKL124W NBP1P52919 319 aaPredicted RBP4.82□□□□□ -1.64
SSH4YKL124W RCR2Q03446 210 aaKnown RBP4.82□□□□□ -1.64
SSH4YKL124W LCD1Q04377 747 aa4.82□□□□□ -1.64
SSH4YKL124W DON1Q05610 365 aa4.82□□□□□ -1.64
SSH4YKL124W PSR2Q07949 397 aa4.82□□□□□ -1.64
SSH4YKL124W RAD59Q12223 238 aa4.82□□□□□ -1.64
SSH4YKL124W MED1Q12321 566 aa4.82□□□□□ -1.64
SSH4YKL124W SCP160P06105 1222 aaKnown RBP RIP-Chip data4.81□□□□□ -1.64not detected
SSH4YKL124W HSC82P15108 705 aaKnown RBP4.81□□□□□ -1.64
SSH4YKL124W YEL1P34225 687 aa4.81□□□□□ -1.64
SSH4YKL124W RIM4P38741 713 aa4.81□□□□□ -1.64
SSH4YKL124W CCC2P38995 1004 aa4.81□□□□□ -1.64
SSH4YKL124W CCM1P48237 864 aaPredicted RBP4.81□□□□□ -1.64
SSH4YKL124W HOS2P53096 452 aaPredicted RBP4.81□□□□□ -1.64
SSH4YKL124W NOP13P53883 403 aaKnown RBP RIP-Chip data4.81□□□□□ -1.64not detected
SSH4YKL124W EEB1Q02891 456 aa4.81□□□□□ -1.64
SSH4YKL124W POB3Q04636 552 aaKnown RBP4.81□□□□□ -1.64
SSH4YKL124W SHS1Q07657 551 aa4.81□□□□□ -1.64
SSH4YKL124W SGT2Q12118 346 aaKnown RBP4.81□□□□□ -1.64
SSH4YKL124W DDP1Q99321 188 aaKnown RBP4.81□□□□□ -1.64
SSH4YKL124W CDC15P27636 974 aa4.8□□□□□ -1.64
SSH4YKL124W SEC9P40357 651 aa4.8□□□□□ -1.64
SSH4YKL124W CWC21Q03375 135 aaKnown RBP4.8□□□□□ -1.64
SSH4YKL124W YLR257WQ06146 321 aaKnown RBP4.8□□□□□ -1.64
SSH4YKL124W JIP5Q06214 492 aaPredicted RBP4.8□□□□□ -1.64
SSH4YKL124W GAL80P04387 435 aa4.8□□□□□ -1.64
SSH4YKL124W ASP3-2P0CX77 362 aa4.8□□□□□ -1.64
SSH4YKL124W ASP3-3P0CX78 362 aa4.8□□□□□ -1.64
SSH4YKL124W ASP3-4P0CX79 362 aa4.8□□□□□ -1.64
SSH4YKL124W ASP3-1P0CZ17 362 aa4.8□□□□□ -1.64
SSH4YKL124W RPL4AP10664 362 aaKnown RBP4.8□□□□□ -1.64
SSH4YKL124W NAT1P12945 854 aaKnown RBP4.8□□□□□ -1.64
SSH4YKL124W KGD2P19262 463 aaPredicted RBP4.8□□□□□ -1.64
SSH4YKL124W RAD27P26793 382 aa4.8□□□□□ -1.64
SSH4YKL124W PRR1P28708 518 aa4.8□□□□□ -1.64
SSH4YKL124W YBR284WP38150 797 aa4.8□□□□□ -1.64
SSH4YKL124W MEP1P40260 492 aa4.8□□□□□ -1.64
SSH4YKL124W MOB1P40484 314 aa4.8□□□□□ -1.64
SSH4YKL124W LCB2P40970 561 aa4.8□□□□□ -1.64
SSH4YKL124W DAS1P47005 663 aa4.8□□□□□ -1.64
SSH4YKL124W YJR142WP47173 342 aa4.8□□□□□ -1.64
SSH4YKL124W YPT11P48559 417 aa4.8□□□□□ -1.64
SSH4YKL124W RPL4BP49626 362 aaKnown RBP4.8□□□□□ -1.64
SSH4YKL124W NUT1P53114 1132 aa4.8□□□□□ -1.64
SSH4YKL124W YGL081WP53156 320 aa4.8□□□□□ -1.64
SSH4YKL124W STP1Q00947 519 aa4.8□□□□□ -1.64
SSH4YKL124W UBP3Q01477 912 aaKnown RBP RIP-Chip data4.8□□□□□ -1.64not detected
SSH4YKL124W ADA2Q02336 434 aa4.8□□□□□ -1.64
SSH4YKL124W SPE3Q12074 293 aaKnown RBP4.8□□□□□ -1.64
SSH4YKL124W DAL7P21826 554 aa4.79□□□□□ -1.64
SSH4YKL124W TRK2P28584 889 aa4.79□□□□□ -1.64
SSH4YKL124W CDC11P32458 415 aa4.79□□□□□ -1.64
SSH4YKL124W SWI3P32591 825 aa4.79□□□□□ -1.64
SSH4YKL124W MUD1P32605 298 aaKnown RBP4.79□□□□□ -1.64
SSH4YKL124W GCS1P35197 352 aa4.79□□□□□ -1.64
SSH4YKL124W KDX1P36005 433 aa4.79□□□□□ -1.64
SSH4YKL124W BCD1P38772 366 aa4.79□□□□□ -1.64
SSH4YKL124W PEX28P38848 579 aa4.79□□□□□ -1.64
SSH4YKL124W FTR1P40088 404 aa4.79□□□□□ -1.64
SSH4YKL124W CCT5P40413 562 aaKnown RBP4.79□□□□□ -1.64
SSH4YKL124W YIR016WP40572 265 aa4.79□□□□□ -1.64
SSH4YKL124W LSB6P42951 607 aa4.79□□□□□ -1.64
SSH4YKL124W FYV8P46949 817 aaKnown RBP4.79□□□□□ -1.64
SSH4YKL124W HSH155P49955 971 aaKnown RBP4.79□□□□□ -1.64
SSH4YKL124W SPC98P53540 846 aa4.79□□□□□ -1.64
SSH4YKL124W YNL058CP53947 316 aa4.79□□□□□ -1.64
SSH4YKL124W TIM8P57744 87 aa4.79□□□□□ -1.64
SSH4YKL124W UTP14Q04500 899 aaKnown RBP4.79□□□□□ -1.64
SSH4YKL124W HEL2Q05580 639 aaKnown RBP4.79□□□□□ -1.64
SSH4YKL124W ETT1Q08421 412 aaKnown RBP4.79□□□□□ -1.64
SSH4YKL124W YPR015CQ12531 247 aa4.79□□□□□ -1.64
SSH4YKL124W CTF3Q12748 733 aa4.79□□□□□ -1.64
SSH4YKL124W LAA1P39526 2014 aa4.79□□□□□ -1.64
SSH4YKL124W SNF1P06782 633 aaKnown RBP4.78□□□□□ -1.64
SSH4YKL124W HMG2P12684 1045 aa4.78□□□□□ -1.64
Retrieved 100 of 5,963 RNA–protein pairs in 17.1 ms