RNA–Protein interactions for RNA: ENST00000573028.5

VPS53-215, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 2

Gene VPS53, Length 3,204 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-215ENST00000573028 GOLIM4O00461 696 aa20.13■□□□□ 0.81
VPS53-215ENST00000573028 ANKLE2Q86XL3 938 aa20.13■□□□□ 0.81
VPS53-215ENST00000573028 PDCL2Q8N4E4 241 aa20.13■□□□□ 0.81
VPS53-215ENST00000573028 PDIA4P13667 645 aaKnown RBP20.13■□□□□ 0.81
VPS53-215ENST00000573028 GTF2F1P35269 517 aaKnown RBP eCLIP20.13■□□□□ 0.81
VPS53-215ENST00000573028 MCMDC2Q4G0Z9 681 aa20.13■□□□□ 0.81
VPS53-215ENST00000573028 SNRKQ9NRH2 765 aa20.12■□□□□ 0.81
VPS53-215ENST00000573028 U3KPZ7 1027 aaPredicted RBP20.12■□□□□ 0.81
VPS53-215ENST00000573028 HEG1Q9ULI3 1381 aa20.12■□□□□ 0.81
VPS53-215ENST00000573028 A0A0G2JLW4 131 aa20.12■□□□□ 0.81
VPS53-215ENST00000573028 ZSCAN25Q6NSZ9 544 aa20.12■□□□□ 0.81
VPS53-215ENST00000573028 LMBR1LQ6UX01 489 aa20.12■□□□□ 0.81
VPS53-215ENST00000573028 STOX1Q6ZVD7 989 aa20.12■□□□□ 0.81
VPS53-215ENST00000573028 ZNF609O15014 1411 aa20.11■□□□□ 0.81
VPS53-215ENST00000573028 CCAR1Q8IX12 1150 aaKnown RBP20.11■□□□□ 0.81
VPS53-215ENST00000573028 SLC52A2Q9HAB3 445 aa20.11■□□□□ 0.81
VPS53-215ENST00000573028 COPRSQ9NQ92 184 aa20.11■□□□□ 0.81
VPS53-215ENST00000573028 CFAP45Q9UL16 551 aa20.11■□□□□ 0.81
VPS53-215ENST00000573028 TIMM10P62072 90 aa20.11■□□□□ 0.81
VPS53-215ENST00000573028 ARID5BQ14865 1188 aa20.11■□□□□ 0.81
VPS53-215ENST00000573028 TPD52L1Q16890 204 aaPredicted RBP20.11■□□□□ 0.81
VPS53-215ENST00000573028 BECN2A8MW95 431 aa20.1■□□□□ 0.81
VPS53-215ENST00000573028 TNNT1P13805 278 aa20.1■□□□□ 0.81
VPS53-215ENST00000573028 ATP2B3Q16720 1220 aa20.1■□□□□ 0.81
VPS53-215ENST00000573028 CCDC144BQ3MJ40 725 aa20.1■□□□□ 0.81
VPS53-215ENST00000573028 CCDC144CPQ8IYA2 1237 aa20.1■□□□□ 0.81
VPS53-215ENST00000573028 CACTINQ8WUQ7 758 aaKnown RBP20.1■□□□□ 0.81
VPS53-215ENST00000573028 C11orf57Q6ZUT1 292 aaPredicted RBP20.1■□□□□ 0.81
VPS53-215ENST00000573028 FILIP1Q7Z7B0 1213 aa20.1■□□□□ 0.81
VPS53-215ENST00000573028 USPL1Q5W0Q7 1092 aa20.1■□□□□ 0.81
VPS53-215ENST00000573028 KRT28Q7Z3Y7 464 aa20.1■□□□□ 0.81
VPS53-215ENST00000573028 PTPDC1A2A3K4 754 aa20.09■□□□□ 0.81
VPS53-215ENST00000573028 ME1P48163 572 aa20.09■□□□□ 0.81
VPS53-215ENST00000573028 TSGA10IPQ3SY00 556 aa20.09■□□□□ 0.81
VPS53-215ENST00000573028 TDRD7Q8NHU6 1098 aaKnown RBP20.09■□□□□ 0.81
VPS53-215ENST00000573028 ZHX1Q9UKY1 873 aaPredicted RBP20.09■□□□□ 0.81
VPS53-215ENST00000573028 U2AF2P26368 475 aaKnown RBP eCLIP20.09■□□□□ 0.81
VPS53-215ENST00000573028 CCDC73Q6ZRK6 1079 aa20.09■□□□□ 0.81
VPS53-215ENST00000573028 NCAPD2Q15021 1401 aa20.09■□□□□ 0.81
VPS53-215ENST00000573028 RFX5P48382 616 aaPredicted RBP20.08■□□□□ 0.81
VPS53-215ENST00000573028 PLA2G4DQ86XP0 818 aa20.08■□□□□ 0.8
VPS53-215ENST00000573028 USP28Q96RU2 1077 aa20.08■□□□□ 0.8
VPS53-215ENST00000573028 ALDH8A1Q9H2A2 487 aaPredicted RBP20.08■□□□□ 0.8
VPS53-215ENST00000573028 TATP17735 454 aaPredicted RBP20.08■□□□□ 0.8
VPS53-215ENST00000573028 NAA30Q147X3 362 aaPredicted RBP20.08■□□□□ 0.8
VPS53-215ENST00000573028 ZSCAN16Q9H4T2 348 aaPredicted RBP20.08■□□□□ 0.8
VPS53-215ENST00000573028 RAB11FIP4Q86YS3 637 aa20.07■□□□□ 0.8
VPS53-215ENST00000573028 KINO60870 393 aaKnown RBP20.07■□□□□ 0.8
VPS53-215ENST00000573028 SMAP1Q8IYB5 467 aaPredicted RBP20.07■□□□□ 0.8
VPS53-215ENST00000573028 NSUN7Q8NE18 718 aaKnown RBP20.07■□□□□ 0.8
VPS53-215ENST00000573028 DDX17Q92841 729 aaKnown RBP20.07■□□□□ 0.8
VPS53-215ENST00000573028 HAUS7Q99871 368 aa20.07■□□□□ 0.8
VPS53-215ENST00000573028 GOLPH3LQ9H4A5 285 aa20.07■□□□□ 0.8
VPS53-215ENST00000573028 ADGRL3Q9HAR2 1447 aa20.07■□□□□ 0.8
VPS53-215ENST00000573028 SNRPA1P09661 255 aaKnown RBP20.06■□□□□ 0.8
VPS53-215ENST00000573028 DHX32Q7L7V1 743 aaKnown RBP20.06■□□□□ 0.8
VPS53-215ENST00000573028 ERBB3P21860 1342 aa20.06■□□□□ 0.8
VPS53-215ENST00000573028 OTUD7BQ6GQQ9 843 aa20.06■□□□□ 0.8
VPS53-215ENST00000573028 KBTBD3Q8NAB2 608 aa20.06■□□□□ 0.8
VPS53-215ENST00000573028 LMO7Q8WWI1 1683 aa20.06■□□□□ 0.8
VPS53-215ENST00000573028 RBM43Q6ZSC3 357 aaKnown RBP20.06■□□□□ 0.8
VPS53-215ENST00000573028 CABLES1Q8TDN4 633 aa20.06■□□□□ 0.8
VPS53-215ENST00000573028 PHKG2P15735 406 aa20.05■□□□□ 0.8
VPS53-215ENST00000573028 CHRNA2Q15822 529 aa20.05■□□□□ 0.8
VPS53-215ENST00000573028 TTLL5Q6EMB2 1281 aa20.05■□□□□ 0.8
VPS53-215ENST00000573028 FSIP1Q8NA03 581 aa20.05■□□□□ 0.8
VPS53-215ENST00000573028 ZNF594Q96JF6 807 aaPredicted RBP20.05■□□□□ 0.8
VPS53-215ENST00000573028 TRMT1Q9NXH9 659 aaKnown RBP20.05■□□□□ 0.8
VPS53-215ENST00000573028 PAG1Q9NWQ8 432 aa20.05■□□□□ 0.8
VPS53-215ENST00000573028 CTDNEP1O95476 244 aa20.04■□□□□ 0.8
VPS53-215ENST00000573028 HAND2P61296 217 aa20.04■□□□□ 0.8
VPS53-215ENST00000573028 GPHNQ9NQX3 736 aaPredicted RBP20.04■□□□□ 0.8
VPS53-215ENST00000573028 PFKFB2O60825 505 aa20.04■□□□□ 0.8
VPS53-215ENST00000573028 SDF4Q9BRK5 362 aa20.04■□□□□ 0.8
VPS53-215ENST00000573028 IGSF3O75054 1194 aa20.04■□□□□ 0.8
VPS53-215ENST00000573028 PRDM4Q9UKN5 801 aa20.04■□□□□ 0.8
VPS53-215ENST00000573028 ZNF330Q9Y3S2 320 aaPredicted RBP20.04■□□□□ 0.8
VPS53-215ENST00000573028 CCDC112Q8NEF3 446 aa20.03■□□□□ 0.8
VPS53-215ENST00000573028 CCDC85AQ96PX6 553 aaPredicted RBP20.03■□□□□ 0.8
VPS53-215ENST00000573028 FKBP4Q02790 459 aaKnown RBP eCLIP20.03■□□□□ 0.8
VPS53-215ENST00000573028 STX1AQ16623 288 aa20.03■□□□□ 0.8
VPS53-215ENST00000573028 KLHL34Q8N239 644 aa20.03■□□□□ 0.8
VPS53-215ENST00000573028 FMNL2Q96PY5 1086 aa20.03■□□□□ 0.8
VPS53-215ENST00000573028 ADD1P35611 737 aaKnown RBP20.02■□□□□ 0.8
VPS53-215ENST00000573028 IQCB1Q15051 598 aa20.02■□□□□ 0.8
VPS53-215ENST00000573028 HSP90AB3PQ58FF7 597 aa20.02■□□□□ 0.8
VPS53-215ENST00000573028 IFNL2Q8IZJ0 200 aa20.02■□□□□ 0.8
VPS53-215ENST00000573028 USP27XA6NNY8 438 aa20.02■□□□□ 0.8
VPS53-215ENST00000573028 POLR3DP05423 398 aaPredicted RBP20.02■□□□□ 0.8
VPS53-215ENST00000573028 CABP4P57796 275 aa20.02■□□□□ 0.8
VPS53-215ENST00000573028 SF3A1Q15459 793 aaKnown RBP20.02■□□□□ 0.8
VPS53-215ENST00000573028 JCADQ9P266 1359 aa20.02■□□□□ 0.8
VPS53-215ENST00000573028 A0A1B0GVL5 298 aa20.02■□□□□ 0.79
VPS53-215ENST00000573028 E7EWF7 191 aa20.02■□□□□ 0.79
VPS53-215ENST00000573028 ARHGAP30Q7Z6I6 1101 aaPredicted RBP20.02■□□□□ 0.79
VPS53-215ENST00000573028 AOPEPQ8N6M6 819 aa20.02■□□□□ 0.79
VPS53-215ENST00000573028 SMARCC2Q8TAQ2 1214 aa20.02■□□□□ 0.79
VPS53-215ENST00000573028 NOL12Q9UGY1 213 aaKnown RBP eCLIP20.02■□□□□ 0.79
VPS53-215ENST00000573028 V9GYY5 206 aaPredicted RBP20.02■□□□□ 0.79
VPS53-215ENST00000573028 LRRC24Q50LG9 513 aa20.01■□□□□ 0.79
Retrieved 100 of 20,778 RNA–protein pairs in 50.5 ms