RNA–Protein interactions for RNA: ENST00000486758.5

SHROOM3-208, Transcript of shroom family member 3, humanhuman

TSL 2

Gene SHROOM3, Length 3,766 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHROOM3-208ENST00000486758 LINS1Q8NG48 757 aa14.43□□□□□ -0.1
SHROOM3-208ENST00000486758 CACTINQ8WUQ7 758 aaKnown RBP14.43□□□□□ -0.1
SHROOM3-208ENST00000486758 ST7Q9NRC1 585 aa14.43□□□□□ -0.1
SHROOM3-208ENST00000486758 NR1I2O75469 434 aa14.42□□□□□ -0.1
SHROOM3-208ENST00000486758 CHGBP05060 677 aa14.42□□□□□ -0.1
SHROOM3-208ENST00000486758 TMC6Q7Z403 805 aa14.42□□□□□ -0.1
SHROOM3-208ENST00000486758 UBXN4Q92575 508 aa14.42□□□□□ -0.1
SHROOM3-208ENST00000486758 ZNF594Q96JF6 807 aaPredicted RBP14.42□□□□□ -0.1
SHROOM3-208ENST00000486758 FEZ1Q99689 392 aa14.42□□□□□ -0.1
SHROOM3-208ENST00000486758 RGS12O14924 1447 aa14.42□□□□□ -0.1
SHROOM3-208ENST00000486758 RRP12Q5JTH9 1297 aaKnown RBP14.42□□□□□ -0.1
SHROOM3-208ENST00000486758 NOL10Q9BSC4 688 aaKnown RBP14.42□□□□□ -0.1
SHROOM3-208ENST00000486758 PAXBP1Q9Y5B6 917 aa14.42□□□□□ -0.1
SHROOM3-208ENST00000486758 ZNF75DP51815 510 aa14.42□□□□□ -0.1
SHROOM3-208ENST00000486758 CCDC82Q8N4S0 544 aa14.42□□□□□ -0.1
SHROOM3-208ENST00000486758 AOPEPQ8N6M6 819 aa14.42□□□□□ -0.1
SHROOM3-208ENST00000486758 RAD50Q92878 1312 aa14.41□□□□□ -0.1
SHROOM3-208ENST00000486758 A0A0D9SFI3 127 aa14.41□□□□□ -0.1
SHROOM3-208ENST00000486758 GIGYF1O75420 1035 aaPredicted RBP14.41□□□□□ -0.1
SHROOM3-208ENST00000486758 SYT10Q6XYQ8 523 aa14.41□□□□□ -0.1
SHROOM3-208ENST00000486758 TIGD1Q96MW7 591 aa14.41□□□□□ -0.1
SHROOM3-208ENST00000486758 DBNDD2Q9BQY9 259 aa14.41□□□□□ -0.1
SHROOM3-208ENST00000486758 SH2B1Q9NRF2 756 aaPredicted RBP14.41□□□□□ -0.1
SHROOM3-208ENST00000486758 ARGLU1Q9NWB6 273 aaPredicted RBP14.41□□□□□ -0.1
SHROOM3-208ENST00000486758 JAK2O60674 1132 aa14.41□□□□□ -0.1
SHROOM3-208ENST00000486758 SNW1Q13573 536 aaKnown RBP14.41□□□□□ -0.1
SHROOM3-208ENST00000486758 CADPS2Q86UW7 1296 aa14.41□□□□□ -0.1
SHROOM3-208ENST00000486758 DDX19AQ9NUU7 478 aaKnown RBP14.41□□□□□ -0.1
SHROOM3-208ENST00000486758 RALYLQ86SE5 291 aaKnown RBP14.41□□□□□ -0.1
SHROOM3-208ENST00000486758 MRVI1Q9Y6F6 885 aa14.41□□□□□ -0.1
SHROOM3-208ENST00000486758 ZNF790Q6PG37 636 aa14.4□□□□□ -0.1
SHROOM3-208ENST00000486758 CCAR1Q8IX12 1150 aaKnown RBP14.4□□□□□ -0.1
SHROOM3-208ENST00000486758 CEP57L1Q8IYX8 460 aa14.4□□□□□ -0.1
SHROOM3-208ENST00000486758 AXIN2Q9Y2T1 843 aa14.4□□□□□ -0.1
SHROOM3-208ENST00000486758 HIP1O00291 1037 aa14.4□□□□□ -0.1
SHROOM3-208ENST00000486758 NFXL1Q6ZNB6 911 aa14.4□□□□□ -0.1
SHROOM3-208ENST00000486758 CCDC144CPQ8IYA2 1237 aa14.4□□□□□ -0.1
SHROOM3-208ENST00000486758 SFPQP23246 707 aaKnown RBP eCLIP14.39□□□□□ -0.11
SHROOM3-208ENST00000486758 PTPN21Q16825 1174 aa14.39□□□□□ -0.11
SHROOM3-208ENST00000486758 ERCC6LQ2NKX8 1250 aa14.39□□□□□ -0.11
SHROOM3-208ENST00000486758 DNAI1Q9UI46 699 aa14.39□□□□□ -0.11
SHROOM3-208ENST00000486758 CCDC171Q6TFL3 1326 aa14.39□□□□□ -0.11
SHROOM3-208ENST00000486758 IDH1O75874 414 aaKnown RBP14.39□□□□□ -0.11
SHROOM3-208ENST00000486758 SERPINC1P01008 464 aa14.39□□□□□ -0.11
SHROOM3-208ENST00000486758 IFIT1P09914 478 aaKnown RBP14.39□□□□□ -0.11
SHROOM3-208ENST00000486758 CCDC57Q2TAC2 916 aa14.39□□□□□ -0.11
SHROOM3-208ENST00000486758 TTC39AQ5SRH9 613 aa14.39□□□□□ -0.11
SHROOM3-208ENST00000486758 FSIP1Q8NA03 581 aa14.39□□□□□ -0.11
SHROOM3-208ENST00000486758 CCDC34Q96HJ3 373 aa14.39□□□□□ -0.11
SHROOM3-208ENST00000486758 SLAIN2Q9P270 581 aa14.39□□□□□ -0.11
SHROOM3-208ENST00000486758 TNFRSF11AQ9Y6Q6 616 aaPredicted RBP14.39□□□□□ -0.11
SHROOM3-208ENST00000486758 STK38Q15208 465 aa14.39□□□□□ -0.11
SHROOM3-208ENST00000486758 NPHP4O75161 1426 aaPredicted RBP14.39□□□□□ -0.11
SHROOM3-208ENST00000486758 USP27XA6NNY8 438 aa14.38□□□□□ -0.11
SHROOM3-208ENST00000486758 POLR3DP05423 398 aaPredicted RBP14.38□□□□□ -0.11
SHROOM3-208ENST00000486758 ARHGAP29Q52LW3 1261 aa14.38□□□□□ -0.11
SHROOM3-208ENST00000486758 TMCO3Q6UWJ1 677 aa14.38□□□□□ -0.11
SHROOM3-208ENST00000486758 ZNF397Q8NF99 534 aaPredicted RBP14.38□□□□□ -0.11
SHROOM3-208ENST00000486758 TRIM34Q9BYJ4 488 aa14.38□□□□□ -0.11
SHROOM3-208ENST00000486758 FTOQ9C0B1 505 aaKnown RBP eCLIP14.38□□□□□ -0.11
SHROOM3-208ENST00000486758 NCOA5Q9HCD5 579 aaKnown RBP14.38□□□□□ -0.11
SHROOM3-208ENST00000486758 CEP126Q9P2H0 1117 aa14.38□□□□□ -0.11
SHROOM3-208ENST00000486758 TPCN1Q9ULQ1 816 aa14.38□□□□□ -0.11
SHROOM3-208ENST00000486758 TAF6LQ9Y6J9 622 aa14.38□□□□□ -0.11
SHROOM3-208ENST00000486758 A1BGP04217 495 aa14.38□□□□□ -0.11
SHROOM3-208ENST00000486758 Q6ZUG5 572 aa14.38□□□□□ -0.11
SHROOM3-208ENST00000486758 IFNL2Q8IZJ0 200 aa14.38□□□□□ -0.11
SHROOM3-208ENST00000486758 NAT10Q9H0A0 1025 aaKnown RBP14.38□□□□□ -0.11
SHROOM3-208ENST00000486758 OSBPL3Q9H4L5 887 aa14.38□□□□□ -0.11
SHROOM3-208ENST00000486758 CNNM1Q9NRU3 951 aa14.38□□□□□ -0.11
SHROOM3-208ENST00000486758 MTMR7Q9Y216 660 aa14.38□□□□□ -0.11
SHROOM3-208ENST00000486758 NEK1Q96PY6 1258 aa14.38□□□□□ -0.11
SHROOM3-208ENST00000486758 DDX21Q9NR30 783 aaKnown RBP eCLIP14.38□□□□□ -0.11
SHROOM3-208ENST00000486758 PREX1Q8TCU6 1659 aa14.38□□□□□ -0.11
SHROOM3-208ENST00000486758 TMEM131LA2VDJ0 1609 aa14.38□□□□□ -0.11
SHROOM3-208ENST00000486758 CRB1P82279 1406 aa14.38□□□□□ -0.11
SHROOM3-208ENST00000486758 SLU7O95391 586 aaKnown RBP14.37□□□□□ -0.11
SHROOM3-208ENST00000486758 PI4K2BQ8TCG2 481 aa14.37□□□□□ -0.11
SHROOM3-208ENST00000486758 SIRT1Q96EB6 747 aa14.37□□□□□ -0.11
SHROOM3-208ENST00000486758 TAF3Q5VWG9 929 aa14.37□□□□□ -0.11
SHROOM3-208ENST00000486758 CFAP45Q9UL16 551 aa14.37□□□□□ -0.11
SHROOM3-208ENST00000486758 DLG5Q8TDM6 1919 aa14.37□□□□□ -0.11
SHROOM3-208ENST00000486758 SNRPA1P09661 255 aaKnown RBP14.37□□□□□ -0.11
SHROOM3-208ENST00000486758 LMOD1P29536 600 aaPredicted RBP14.37□□□□□ -0.11
SHROOM3-208ENST00000486758 LEO1Q8WVC0 666 aaPredicted RBP14.37□□□□□ -0.11
SHROOM3-208ENST00000486758 NPHP3Q7Z494 1330 aa14.37□□□□□ -0.11
SHROOM3-208ENST00000486758 ALDH1L1O75891 902 aa14.36□□□□□ -0.11
SHROOM3-208ENST00000486758 GTF2E1P29083 439 aaPredicted RBP14.36□□□□□ -0.11
SHROOM3-208ENST00000486758 APOBRQ0VD83 1088 aa14.36□□□□□ -0.11
SHROOM3-208ENST00000486758 TRDNQ13061 729 aa14.36□□□□□ -0.11
SHROOM3-208ENST00000486758 CCDC144BQ3MJ40 725 aa14.36□□□□□ -0.11
SHROOM3-208ENST00000486758 CFAP100Q494V2 611 aa14.36□□□□□ -0.11
SHROOM3-208ENST00000486758 CERS3Q8IU89 383 aa14.36□□□□□ -0.11
SHROOM3-208ENST00000486758 LSG1Q9H089 658 aaKnown RBP14.36□□□□□ -0.11
SHROOM3-208ENST00000486758 SPTLC3Q9NUV7 552 aa14.36□□□□□ -0.11
SHROOM3-208ENST00000486758 SLC27A2O14975 620 aa14.36□□□□□ -0.11
SHROOM3-208ENST00000486758 OTUD7BQ6GQQ9 843 aa14.36□□□□□ -0.11
SHROOM3-208ENST00000486758 ZNF589Q86UQ0 364 aaPredicted RBP14.36□□□□□ -0.11
SHROOM3-208ENST00000486758 KIF24Q5T7B8 1368 aa14.36□□□□□ -0.11
SHROOM3-208ENST00000486758 CALCOCO1Q9P1Z2 691 aa14.36□□□□□ -0.11
Retrieved 100 of 20,778 RNA–protein pairs in 31.3 ms