RNA–Protein interactions for RNA: ENST00000486758.5

SHROOM3-208, Transcript of shroom family member 3, humanhuman

TSL 2

Gene SHROOM3, Length 3,766 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHROOM3-208ENST00000486758 NISCHQ9Y2I1 1504 aa23.28■■□□□ 1.32
SHROOM3-208ENST00000486758 DCAF8L2P0C7V8 631 aa21.56■■□□□ 1.04
SHROOM3-208ENST00000486758 SHROOM4Q9ULL8 1493 aa21.49■■□□□ 1.03
SHROOM3-208ENST00000486758 SUPT5HO00267 1087 aaKnown RBP21.3■■□□□ 1
SHROOM3-208ENST00000486758 ABCC9O60706 1549 aa20.47■□□□□ 0.87
SHROOM3-208ENST00000486758 PCGF6Q9BYE7 350 aa20.43■□□□□ 0.86
SHROOM3-208ENST00000486758 EHMT2Q96KQ7 1210 aa20.29■□□□□ 0.84
SHROOM3-208ENST00000486758 PPARGC1BQ86YN6 1023 aaKnown RBP20.25■□□□□ 0.83
SHROOM3-208ENST00000486758 HRCP23327 699 aa20.18■□□□□ 0.82
SHROOM3-208ENST00000486758 CCDC180Q9P1Z9 1646 aa20.11■□□□□ 0.81
SHROOM3-208ENST00000486758 MYO15BQ96JP2 1530 aa20.09■□□□□ 0.81
SHROOM3-208ENST00000486758 FAM9AQ8IZU1 332 aaPredicted RBP19.94■□□□□ 0.78
SHROOM3-208ENST00000486758 CHIC1Q5VXU3 224 aa19.89■□□□□ 0.78
SHROOM3-208ENST00000486758 LOC105371045A0A1W2PR82 267 aa19.86■□□□□ 0.77
SHROOM3-208ENST00000486758 TTBK1Q5TCY1 1321 aaPredicted RBP19.55■□□□□ 0.72
SHROOM3-208ENST00000486758 PABPN1Q86U42 306 aaKnown RBP eCLIP19.53■□□□□ 0.72
SHROOM3-208ENST00000486758 TRIM41Q8WV44 630 aa19.51■□□□□ 0.71
SHROOM3-208ENST00000486758 ZCCHC6Q5VYS8 1495 aaKnown RBP19.51■□□□□ 0.71
SHROOM3-208ENST00000486758 TRIM26Q12899 539 aaPredicted RBP19.36■□□□□ 0.69
SHROOM3-208ENST00000486758 PELP1Q8IZL8 1130 aaKnown RBP19.35■□□□□ 0.69
SHROOM3-208ENST00000486758 ZEB1P37275 1124 aaPredicted RBP19.15■□□□□ 0.66
SHROOM3-208ENST00000486758 RANGAP1P46060 587 aaPredicted RBP19.12■□□□□ 0.65
SHROOM3-208ENST00000486758 SCAF1Q9H7N4 1312 aaKnown RBP19.1■□□□□ 0.65
SHROOM3-208ENST00000486758 CCER1Q8TC90 406 aaPredicted RBP19.06■□□□□ 0.64
SHROOM3-208ENST00000486758 YTHDC1Q96MU7 727 aaKnown RBP19.02■□□□□ 0.64
SHROOM3-208ENST00000486758 DNAJC5BQ9UF47 199 aa19.02■□□□□ 0.63
SHROOM3-208ENST00000486758 RB1CC1Q8TDY2 1594 aa19.01■□□□□ 0.63
SHROOM3-208ENST00000486758 SCRIBQ14160 1630 aa18.99■□□□□ 0.63
SHROOM3-208ENST00000486758 NACADO15069 1562 aa18.97■□□□□ 0.63
SHROOM3-208ENST00000486758 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP18.96■□□□□ 0.63
SHROOM3-208ENST00000486758 CENPBP07199 599 aaPredicted RBP18.91■□□□□ 0.62
SHROOM3-208ENST00000486758 DCAF1Q9Y4B6 1507 aa18.89■□□□□ 0.62
SHROOM3-208ENST00000486758 UBTFP17480 764 aaKnown RBP18.89■□□□□ 0.61
SHROOM3-208ENST00000486758 GTF3C3Q9Y5Q9 886 aa18.87■□□□□ 0.61
SHROOM3-208ENST00000486758 NEUROD1Q13562 356 aa18.77■□□□□ 0.6
SHROOM3-208ENST00000486758 MYT1Q01538 1121 aa18.77■□□□□ 0.59
SHROOM3-208ENST00000486758 ACIN1Q9UKV3 1341 aaKnown RBP18.73■□□□□ 0.59
SHROOM3-208ENST00000486758 DIEXFQ68CQ4 756 aaKnown RBP18.73■□□□□ 0.59
SHROOM3-208ENST00000486758 RSF1Q96T23 1441 aaPredicted RBP18.7■□□□□ 0.58
SHROOM3-208ENST00000486758 APLP2Q06481 763 aa18.62■□□□□ 0.57
SHROOM3-208ENST00000486758 HNRNPUL2Q1KMD3 747 aaKnown RBP18.55■□□□□ 0.56
SHROOM3-208ENST00000486758 CECR2Q9BXF3 1484 aa18.55■□□□□ 0.56
SHROOM3-208ENST00000486758 UNC13AQ9UPW8 1703 aa18.47■□□□□ 0.55
SHROOM3-208ENST00000486758 ATP1B4Q9UN42 357 aaPredicted RBP18.37■□□□□ 0.53
SHROOM3-208ENST00000486758 BICRAQ9NZM4 1560 aa18.36■□□□□ 0.53
SHROOM3-208ENST00000486758 ITGAEP38570 1179 aa18.35■□□□□ 0.53
SHROOM3-208ENST00000486758 MROH2BQ7Z745 1585 aa18.3■□□□□ 0.52
SHROOM3-208ENST00000486758 CSRNP3Q8WYN3 585 aa18.27■□□□□ 0.51
SHROOM3-208ENST00000486758 ZNF316A6NFI3 1004 aaPredicted RBP18.22■□□□□ 0.51
SHROOM3-208ENST00000486758 MIER1Q8N108 512 aa18.16■□□□□ 0.5
SHROOM3-208ENST00000486758 WIZO95785 1651 aa18.16■□□□□ 0.5
SHROOM3-208ENST00000486758 BCANQ96GW7 911 aa18.11■□□□□ 0.49
SHROOM3-208ENST00000486758 ABCC8Q09428 1581 aa18.11■□□□□ 0.49
SHROOM3-208ENST00000486758 SOGA1O94964 1423 aa18.07■□□□□ 0.48
SHROOM3-208ENST00000486758 CCDC88BA6NC98 1476 aa18.03■□□□□ 0.48
SHROOM3-208ENST00000486758 CEP162Q5TB80 1403 aa18■□□□□ 0.47
SHROOM3-208ENST00000486758 ERCC6Q03468 1493 aa17.98■□□□□ 0.47
SHROOM3-208ENST00000486758 RUSC2Q8N2Y8 1516 aa17.96■□□□□ 0.47
SHROOM3-208ENST00000486758 P3H3Q8IVL6 736 aa17.94■□□□□ 0.46
SHROOM3-208ENST00000486758 EIF4G1Q04637 1599 aaKnown RBP17.94■□□□□ 0.46
SHROOM3-208ENST00000486758 BAZ1AQ9NRL2 1556 aaPredicted RBP17.92■□□□□ 0.46
SHROOM3-208ENST00000486758 CC2D2AQ9P2K1 1620 aa17.85■□□□□ 0.45
SHROOM3-208ENST00000486758 WRNQ14191 1432 aaPredicted RBP eCLIP17.83■□□□□ 0.45
SHROOM3-208ENST00000486758 FAM50AQ14320 339 aaKnown RBP17.83■□□□□ 0.44
SHROOM3-208ENST00000486758 NEFLP07196 543 aa17.8■□□□□ 0.44
SHROOM3-208ENST00000486758 CLIP1P30622 1438 aa17.79■□□□□ 0.44
SHROOM3-208ENST00000486758 ERICH6Q7L0X2 663 aa17.79■□□□□ 0.44
SHROOM3-208ENST00000486758 TNIKQ9UKE5 1360 aa17.76■□□□□ 0.43
SHROOM3-208ENST00000486758 GOLGA3Q08378 1498 aa17.72■□□□□ 0.43
SHROOM3-208ENST00000486758 SUPT16HQ9Y5B9 1047 aaKnown RBP17.7■□□□□ 0.42
SHROOM3-208ENST00000486758 CNGB1Q14028 1251 aaPredicted RBP17.7■□□□□ 0.42
SHROOM3-208ENST00000486758 SMARCA4P51532 1647 aa17.69■□□□□ 0.42
SHROOM3-208ENST00000486758 ARID3CA6NKF2 412 aa17.69■□□□□ 0.42
SHROOM3-208ENST00000486758 KCNH8Q96L42 1107 aa17.69■□□□□ 0.42
SHROOM3-208ENST00000486758 DNAJC5Q9H3Z4 198 aa17.68■□□□□ 0.42
SHROOM3-208ENST00000486758 FKBP8Q14318 412 aa17.68■□□□□ 0.42
SHROOM3-208ENST00000486758 BAZ1BQ9UIG0 1483 aaKnown RBP17.66■□□□□ 0.42
SHROOM3-208ENST00000486758 TOP2AP11388 1531 aaKnown RBP17.65■□□□□ 0.42
SHROOM3-208ENST00000486758 HIRIP3Q9BW71 556 aaPredicted RBP17.62■□□□□ 0.41
SHROOM3-208ENST00000486758 FBLN2P98095 1184 aa17.62■□□□□ 0.41
SHROOM3-208ENST00000486758 ATAD2BQ9ULI0 1458 aa17.61■□□□□ 0.41
SHROOM3-208ENST00000486758 ANP32EQ9BTT0 268 aa17.6■□□□□ 0.41
SHROOM3-208ENST00000486758 PRKCSHP14314 528 aaPredicted RBP17.59■□□□□ 0.41
SHROOM3-208ENST00000486758 KANK4Q5T7N3 995 aaPredicted RBP17.59■□□□□ 0.41
SHROOM3-208ENST00000486758 EEA1Q15075 1411 aa17.57■□□□□ 0.4
SHROOM3-208ENST00000486758 SMARCA2P51531 1590 aa17.57■□□□□ 0.4
SHROOM3-208ENST00000486758 BCL11AQ9H165 835 aa17.57■□□□□ 0.4
SHROOM3-208ENST00000486758 TRIM52Q96A61 297 aa17.56■□□□□ 0.4
SHROOM3-208ENST00000486758 CEP164Q9UPV0 1460 aa17.56■□□□□ 0.4
SHROOM3-208ENST00000486758 TSHZ2Q9NRE2 1034 aa17.54■□□□□ 0.4
SHROOM3-208ENST00000486758 DDX10Q13206 875 aaKnown RBP17.53■□□□□ 0.4
SHROOM3-208ENST00000486758 NCAPD3P42695 1498 aa17.53■□□□□ 0.4
SHROOM3-208ENST00000486758 RAPGEF2Q9Y4G8 1499 aa17.51■□□□□ 0.39
SHROOM3-208ENST00000486758 POLR3GLQ9BT43 218 aa17.49■□□□□ 0.39
SHROOM3-208ENST00000486758 TRHP20396 242 aaPredicted RBP17.46■□□□□ 0.39
SHROOM3-208ENST00000486758 IRX6P78412 446 aaPredicted RBP17.46■□□□□ 0.39
SHROOM3-208ENST00000486758 VPS8Q8N3P4 1428 aa17.42■□□□□ 0.38
SHROOM3-208ENST00000486758 HMGXB3Q12766 1538 aa17.41■□□□□ 0.38
SHROOM3-208ENST00000486758 SIN3AQ96ST3 1273 aa17.4■□□□□ 0.38
SHROOM3-208ENST00000486758 PEG3Q9GZU2 1588 aa17.39■□□□□ 0.38
Retrieved 100 of 20,778 RNA–protein pairs in 50.7 ms