RNA–Protein interactions for RNA: ENST00000409050.1

SCN1A-203, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

TSL 5 BASIC

Gene SCN1A, Length 5,946 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-203ENST00000409050 FCHSD1Q86WN1 690 aa6.93□□□□□ -1.3
SCN1A-203ENST00000409050 ANKRD44Q8N8A2 993 aa6.93□□□□□ -1.3
SCN1A-203ENST00000409050 ERO1AQ96HE7 468 aa6.93□□□□□ -1.3
SCN1A-203ENST00000409050 RSRC1Q96IZ7 334 aaKnown RBP6.93□□□□□ -1.3
SCN1A-203ENST00000409050 LLPHQ9BRT6 129 aaKnown RBP6.93□□□□□ -1.3
SCN1A-203ENST00000409050 MTMR7Q9Y216 660 aa6.93□□□□□ -1.3
SCN1A-203ENST00000409050 ASXL1Q8IXJ9 1541 aa6.93□□□□□ -1.3
SCN1A-203ENST00000409050 PIK3C2GO75747 1445 aa6.93□□□□□ -1.3
SCN1A-203ENST00000409050 A0A1B0GUA9 196 aa6.93□□□□□ -1.3
SCN1A-203ENST00000409050 A0A1W2PRG0 241 aa6.93□□□□□ -1.3
SCN1A-203ENST00000409050 ZPR1O75312 459 aa6.93□□□□□ -1.3
SCN1A-203ENST00000409050 SSFA2P28290 1259 aa6.93□□□□□ -1.3
SCN1A-203ENST00000409050 IL15P40933 162 aaPredicted RBP6.93□□□□□ -1.3
SCN1A-203ENST00000409050 MNAT1P51948 309 aa6.93□□□□□ -1.3
SCN1A-203ENST00000409050 ARHGAP24Q8N264 748 aa6.93□□□□□ -1.3
SCN1A-203ENST00000409050 HNRNPUL1Q9BUJ2 856 aaKnown RBP eCLIP6.93□□□□□ -1.3
SCN1A-203ENST00000409050 NUP58Q9BVL2 599 aa6.93□□□□□ -1.3
SCN1A-203ENST00000409050 NUCKS1Q9H1E3 243 aaKnown RBP6.93□□□□□ -1.3
SCN1A-203ENST00000409050 JADE2Q9NQC1 790 aa6.93□□□□□ -1.3
SCN1A-203ENST00000409050 NPC1L1Q9UHC9 1359 aa6.93□□□□□ -1.3
SCN1A-203ENST00000409050 KIF3CO14782 793 aa6.92□□□□□ -1.3
SCN1A-203ENST00000409050 SEPT6Q14141 434 aa6.92□□□□□ -1.3
SCN1A-203ENST00000409050 IFNL2Q8IZJ0 200 aa6.92□□□□□ -1.3
SCN1A-203ENST00000409050 CCDC26Q8TAB7 109 aa6.92□□□□□ -1.3
SCN1A-203ENST00000409050 IMPG2Q9BZV3 1241 aa6.92□□□□□ -1.3
SCN1A-203ENST00000409050 TTF2Q9UNY4 1162 aaKnown RBP6.92□□□□□ -1.3
SCN1A-203ENST00000409050 KIF24Q5T7B8 1368 aa6.92□□□□□ -1.3
SCN1A-203ENST00000409050 SKILP12757 684 aa6.92□□□□□ -1.3
SCN1A-203ENST00000409050 RBM5P52756 815 aaKnown RBP eCLIP6.92□□□□□ -1.3
SCN1A-203ENST00000409050 LACTBP83111 547 aaPredicted RBP6.92□□□□□ -1.3
SCN1A-203ENST00000409050 MKRN1Q9UHC7 482 aaKnown RBP6.92□□□□□ -1.3
SCN1A-203ENST00000409050 EXOC6BQ9Y2D4 811 aa6.92□□□□□ -1.3
SCN1A-203ENST00000409050 UHRF1BP1Q6BDS2 1440 aa6.92□□□□□ -1.3
SCN1A-203ENST00000409050 DKC1O60832 514 aaKnown RBP eCLIP6.92□□□□□ -1.31e-7■■■■■ 34.3
SCN1A-203ENST00000409050 MCTP2Q6DN12 878 aa6.92□□□□□ -1.3
SCN1A-203ENST00000409050 CYB5RLQ6IPT4 315 aa6.92□□□□□ -1.3
SCN1A-203ENST00000409050 SAMD1Q6SPF0 538 aaPredicted RBP6.92□□□□□ -1.3
SCN1A-203ENST00000409050 NUTM1Q86Y26 1132 aa6.92□□□□□ -1.3
SCN1A-203ENST00000409050 GPR161Q8N6U8 529 aaKnown RBP6.92□□□□□ -1.3
SCN1A-203ENST00000409050 MAIP1Q8WWC4 291 aa6.92□□□□□ -1.3
SCN1A-203ENST00000409050 CTNNBL1Q8WYA6 563 aaPredicted RBP6.92□□□□□ -1.3
SCN1A-203ENST00000409050 C16orf45Q96MC5 204 aaPredicted RBP6.92□□□□□ -1.3
SCN1A-203ENST00000409050 SAMD15Q9P1V8 674 aa6.92□□□□□ -1.3
SCN1A-203ENST00000409050 WASLO00401 505 aaPredicted RBP6.92□□□□□ -1.3
SCN1A-203ENST00000409050 ZBTB43O43298 467 aa6.92□□□□□ -1.3
SCN1A-203ENST00000409050 PPFIA3O75145 1194 aa6.92□□□□□ -1.3
SCN1A-203ENST00000409050 GTF2F1P35269 517 aaKnown RBP eCLIP6.92□□□□□ -1.3
SCN1A-203ENST00000409050 NOP2P46087 812 aaKnown RBP6.92□□□□□ -1.3
SCN1A-203ENST00000409050 CAMK4Q16566 473 aa6.92□□□□□ -1.3
SCN1A-203ENST00000409050 KLHL10Q6JEL2 608 aa6.92□□□□□ -1.3
SCN1A-203ENST00000409050 LAMC3Q9Y6N6 1575 aa6.92□□□□□ -1.3
SCN1A-203ENST00000409050 F13A1P00488 732 aa6.92□□□□□ -1.3
SCN1A-203ENST00000409050 ARHGAP25P42331 645 aa6.92□□□□□ -1.3
SCN1A-203ENST00000409050 WTAPQ15007 396 aa6.92□□□□□ -1.3
SCN1A-203ENST00000409050 RAB3IL1Q8TBN0 382 aa6.92□□□□□ -1.3
SCN1A-203ENST00000409050 UBE2Q2Q8WVN8 375 aa6.92□□□□□ -1.3
SCN1A-203ENST00000409050 UTP14AQ9BVJ6 771 aaKnown RBP6.92□□□□□ -1.3
SCN1A-203ENST00000409050 C6orf50Q9HD87 102 aa6.92□□□□□ -1.3
SCN1A-203ENST00000409050 PRC1O43663 620 aa6.91□□□□□ -1.3
SCN1A-203ENST00000409050 SNRPA1P09661 255 aaKnown RBP6.91□□□□□ -1.3
SCN1A-203ENST00000409050 TRIM27P14373 513 aa6.91□□□□□ -1.3
SCN1A-203ENST00000409050 MYL6BP14649 208 aa6.91□□□□□ -1.3
SCN1A-203ENST00000409050 GNA11P29992 359 aa6.91□□□□□ -1.3
SCN1A-203ENST00000409050 CCDC96Q2M329 555 aa6.91□□□□□ -1.3
SCN1A-203ENST00000409050 NUTM2AQ8IVF1 878 aaPredicted RBP6.91□□□□□ -1.3
SCN1A-203ENST00000409050 C14orf93Q9H972 538 aaKnown RBP6.91□□□□□ -1.3
SCN1A-203ENST00000409050 HAUS2Q9NVX0 235 aa6.91□□□□□ -1.3
SCN1A-203ENST00000409050 ABCC5O15440 1437 aa6.91□□□□□ -1.3
SCN1A-203ENST00000409050 TRIM75PA6NK02 468 aa6.91□□□□□ -1.3
SCN1A-203ENST00000409050 GTF2A1P52655 376 aaPredicted RBP6.91□□□□□ -1.3
SCN1A-203ENST00000409050 IRX4P78413 519 aa6.91□□□□□ -1.3
SCN1A-203ENST00000409050 CBX1P83916 185 aa6.91□□□□□ -1.3
SCN1A-203ENST00000409050 MCMDC2Q4G0Z9 681 aa6.91□□□□□ -1.3
SCN1A-203ENST00000409050 DDX23Q9BUQ8 820 aaKnown RBP6.91□□□□□ -1.3
SCN1A-203ENST00000409050 HOXB7P09629 217 aa6.91□□□□□ -1.3
SCN1A-203ENST00000409050 ATP8B2P98198 1209 aa6.91□□□□□ -1.3
SCN1A-203ENST00000409050 RUFY4Q6ZNE9 571 aa6.91□□□□□ -1.3
SCN1A-203ENST00000409050 SYCP3Q8IZU3 236 aa6.91□□□□□ -1.3
SCN1A-203ENST00000409050 AFAP1L2Q8N4X5 818 aa6.91□□□□□ -1.3
SCN1A-203ENST00000409050 OTUD6BQ8N6M0 293 aa6.91□□□□□ -1.3
SCN1A-203ENST00000409050 TMX3Q96JJ7 454 aa6.91□□□□□ -1.3
SCN1A-203ENST00000409050 BOLA2Q9H3K6 86 aa6.91□□□□□ -1.3
SCN1A-203ENST00000409050 RANBP6O60518 1105 aaKnown RBP6.91□□□□□ -1.3
SCN1A-203ENST00000409050 VIMP08670 466 aaKnown RBP6.91□□□□□ -1.3
SCN1A-203ENST00000409050 STAT6P42226 847 aa6.91□□□□□ -1.3
SCN1A-203ENST00000409050 MTMR3Q13615 1198 aa6.91□□□□□ -1.3
SCN1A-203ENST00000409050 RAB3GAP1Q15042 981 aa6.91□□□□□ -1.3
SCN1A-203ENST00000409050 CCDC152Q4G0S7 254 aa6.91□□□□□ -1.3
SCN1A-203ENST00000409050 CACNA2D3Q8IZS8 1091 aa6.91□□□□□ -1.3
SCN1A-203ENST00000409050 MYD88Q99836 296 aa6.91□□□□□ -1.3
SCN1A-203ENST00000409050 FAM184BQ9ULE4 1060 aa6.91□□□□□ -1.3
SCN1A-203ENST00000409050 SBDSQ9Y3A5 250 aaKnown RBP eCLIP6.91□□□□□ -1.3
SCN1A-203ENST00000409050 SH2D4BQ5SQS7 431 aa6.91□□□□□ -1.3
SCN1A-203ENST00000409050 HS2ST1Q7LGA3 356 aa6.91□□□□□ -1.3
SCN1A-203ENST00000409050 FERMT3Q86UX7 667 aa6.91□□□□□ -1.3
SCN1A-203ENST00000409050 ESYT1Q9BSJ8 1104 aa6.91□□□□□ -1.3
SCN1A-203ENST00000409050 ABCF2Q9UG63 623 aa6.91□□□□□ -1.3
SCN1A-203ENST00000409050 LUC7L2Q9Y383 392 aaKnown RBP6.91□□□□□ -1.3
SCN1A-203ENST00000409050 ARHGEF12Q9NZN5 1544 aa6.91□□□□□ -1.3
SCN1A-203ENST00000409050 HMGB3O15347 200 aaKnown RBP6.9□□□□□ -1.3
Retrieved 100 of 20,778 RNA–protein pairs in 37 ms