RNA–Protein interactions for RNA: ENST00000559711.5

USP3-213, Transcript of ubiquitin specific peptidase 3, humanhuman

TSL 5 BASIC

Gene USP3, Length 1,693 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP3-213ENST00000559711 PLA2G3Q9NZ20 509 aa11.33□□□□□ -0.6
USP3-213ENST00000559711 KLHL9Q9P2J3 617 aa11.33□□□□□ -0.6
USP3-213ENST00000559711 CPAMD8Q8IZJ3 1885 aa11.33□□□□□ -0.6
USP3-213ENST00000559711 SLC35F4A4IF30 521 aa11.32□□□□□ -0.6
USP3-213ENST00000559711 ARGFXA6NJG6 315 aa11.32□□□□□ -0.6
USP3-213ENST00000559711 CD8B2A6NJW9 211 aa11.32□□□□□ -0.6
USP3-213ENST00000559711 HSPB2A8KAH6 182 aa11.32□□□□□ -0.6
USP3-213ENST00000559711 LINC01387J3KSC0 135 aa11.32□□□□□ -0.6
USP3-213ENST00000559711 NKX2-8O15522 239 aa11.32□□□□□ -0.6
USP3-213ENST00000559711 GPRIN2O60269 458 aa11.32□□□□□ -0.6
USP3-213ENST00000559711 UPK3AO75631 287 aa11.32□□□□□ -0.6
USP3-213ENST00000559711 IGHG1P01857 330 aa11.32□□□□□ -0.6
USP3-213ENST00000559711 HLA-DQA2P01906 255 aa11.32□□□□□ -0.6
USP3-213ENST00000559711 HRGP04196 525 aa11.32□□□□□ -0.6
USP3-213ENST00000559711 PGA4P0DJD7 388 aa11.32□□□□□ -0.6
USP3-213ENST00000559711 PGA3P0DJD8 388 aa11.32□□□□□ -0.6
USP3-213ENST00000559711 CD8BP10966 210 aa11.32□□□□□ -0.6
USP3-213ENST00000559711 PSKH1P11801 424 aa11.32□□□□□ -0.6
USP3-213ENST00000559711 BMP4P12644 408 aa11.32□□□□□ -0.6
USP3-213ENST00000559711 GFRA1P56159 465 aa11.32□□□□□ -0.6
USP3-213ENST00000559711 RAC3P60763 192 aa11.32□□□□□ -0.6
USP3-213ENST00000559711 FMODQ06828 376 aa11.32□□□□□ -0.6
USP3-213ENST00000559711 HSPB2Q16082 182 aa11.32□□□□□ -0.6
USP3-213ENST00000559711 PCK2Q16822 640 aa11.32□□□□□ -0.6
USP3-213ENST00000559711 TEX30Q5JUR7 227 aa11.32□□□□□ -0.6
USP3-213ENST00000559711 GPAT4Q86UL3 456 aa11.32□□□□□ -0.6
USP3-213ENST00000559711 SULF2Q8IWU5 870 aa11.32□□□□□ -0.6
USP3-213ENST00000559711 ZNF454Q8N9F8 522 aa11.32□□□□□ -0.6
USP3-213ENST00000559711 TEX19Q8NA77 164 aa11.32□□□□□ -0.6
USP3-213ENST00000559711 MDS2Q8NDY4 140 aa11.32□□□□□ -0.6
USP3-213ENST00000559711 SLC26A10Q8NG04 563 aa11.32□□□□□ -0.6
USP3-213ENST00000559711 NEIL3Q8TAT5 605 aa11.32□□□□□ -0.6
USP3-213ENST00000559711 C6orf62Q9GZU0 229 aaPredicted RBP11.32□□□□□ -0.6
USP3-213ENST00000559711 RNF32Q9H0A6 362 aa11.32□□□□□ -0.6
USP3-213ENST00000559711 PALMDQ9NP74 551 aa11.32□□□□□ -0.6
USP3-213ENST00000559711 KCNG2Q9UJ96 466 aa11.32□□□□□ -0.6
USP3-213ENST00000559711 PEX16Q9Y5Y5 336 aa11.32□□□□□ -0.6
USP3-213ENST00000559711 FREM2Q5SZK8 3169 aa11.32□□□□□ -0.6
USP3-213ENST00000559711 IGKV1D-43A0A0B4J1Z2 117 aa11.31□□□□□ -0.6
USP3-213ENST00000559711 TRBV2A0A0J9YWF9 115 aa11.31□□□□□ -0.6
USP3-213ENST00000559711 IQCMA0A1B0GVH7 501 aa11.31□□□□□ -0.6
USP3-213ENST00000559711 OR5H15A6NDH6 313 aa11.31□□□□□ -0.6
USP3-213ENST00000559711 TNFSF11O14788 317 aa11.31□□□□□ -0.6
USP3-213ENST00000559711 TRAPPC6AO75865 159 aa11.31□□□□□ -0.6
USP3-213ENST00000559711 SERPINA3P01011 423 aa11.31□□□□□ -0.6
USP3-213ENST00000559711 KRT8P05787 483 aa11.31□□□□□ -0.6
USP3-213ENST00000559711 HPNP05981 417 aa11.31□□□□□ -0.6
USP3-213ENST00000559711 SP1P08047 785 aa11.31□□□□□ -0.6
USP3-213ENST00000559711 CLEC2LP0C7M8 214 aa11.31□□□□□ -0.6
USP3-213ENST00000559711 EDNRAP25101 427 aa11.31□□□□□ -0.6
USP3-213ENST00000559711 GDF1P27539 372 aa11.31□□□□□ -0.6
USP3-213ENST00000559711 PSMB10P40306 273 aa11.31□□□□□ -0.6
USP3-213ENST00000559711 MTNR1BP49286 362 aa11.31□□□□□ -0.6
USP3-213ENST00000559711 GDI2P50395 445 aaKnown RBP11.31□□□□□ -0.6
USP3-213ENST00000559711 CLDN20P56880 219 aa11.31□□□□□ -0.6
USP3-213ENST00000559711 ROM1Q03395 351 aa11.31□□□□□ -0.6
USP3-213ENST00000559711 MXD1Q05195 221 aa11.31□□□□□ -0.6
USP3-213ENST00000559711 MFAP5Q13361 173 aa11.31□□□□□ -0.6
USP3-213ENST00000559711 HIST3H3Q16695 136 aa11.31□□□□□ -0.6
USP3-213ENST00000559711 WIPI1Q5MNZ9 446 aaPredicted RBP11.31□□□□□ -0.6
USP3-213ENST00000559711 LIPNQ5VXI9 398 aa11.31□□□□□ -0.6
USP3-213ENST00000559711 SLC25A25Q6KCM7 469 aa11.31□□□□□ -0.6
USP3-213ENST00000559711 SLC18B1Q6NT16 456 aa11.31□□□□□ -0.6
USP3-213ENST00000559711 ESPNLQ6ZVH7 1005 aa11.31□□□□□ -0.6
USP3-213ENST00000559711 GGNQ86UU5 652 aa11.31□□□□□ -0.6
USP3-213ENST00000559711 FNDC8Q8TC99 324 aa11.31□□□□□ -0.6
USP3-213ENST00000559711 THEM6Q8WUY1 208 aa11.31□□□□□ -0.6
USP3-213ENST00000559711 SLC39A7Q92504 469 aa11.31□□□□□ -0.6
USP3-213ENST00000559711 HAS2Q92819 552 aa11.31□□□□□ -0.6
USP3-213ENST00000559711 ADGRG7Q96K78 797 aa11.31□□□□□ -0.6
USP3-213ENST00000559711 SFXN2Q96NB2 322 aa11.31□□□□□ -0.6
USP3-213ENST00000559711 FOXN4Q96NZ1 517 aa11.31□□□□□ -0.6
USP3-213ENST00000559711 HES7Q9BYE0 225 aa11.31□□□□□ -0.6
USP3-213ENST00000559711 TPK1Q9H3S4 243 aa11.31□□□□□ -0.6
USP3-213ENST00000559711 ZNF703Q9H7S9 590 aaPredicted RBP11.31□□□□□ -0.6
USP3-213ENST00000559711 CRNNQ9UBG3 495 aaPredicted RBP11.31□□□□□ -0.6
USP3-213ENST00000559711 B4GALT7Q9UBV7 327 aa11.31□□□□□ -0.6
USP3-213ENST00000559711 PLEKHB1Q9UF11 243 aaPredicted RBP11.31□□□□□ -0.6
USP3-213ENST00000559711 SHISA3A0PJX4 238 aa11.3□□□□□ -0.6
USP3-213ENST00000559711 PSMD9O00233 223 aa11.3□□□□□ -0.6
USP3-213ENST00000559711 NME2P1O60361 137 aa11.3□□□□□ -0.6
USP3-213ENST00000559711 OR8G3PP0DMU2 310 aa11.3□□□□□ -0.6
USP3-213ENST00000559711 NME2P22392 152 aa11.3□□□□□ -0.6
USP3-213ENST00000559711 RPS27P42677 84 aaKnown RBP11.3□□□□□ -0.6
USP3-213ENST00000559711 NANOS3P60323 173 aaKnown RBP11.3□□□□□ -0.6
USP3-213ENST00000559711 RPS11P62280 158 aaKnown RBP eCLIP11.3□□□□□ -0.6
USP3-213ENST00000559711 ADAM8P78325 824 aa11.3□□□□□ -0.6
USP3-213ENST00000559711 SRSF6Q13247 344 aaKnown RBP11.3□□□□□ -0.6
USP3-213ENST00000559711 SLC17A1Q14916 467 aa11.3□□□□□ -0.6
USP3-213ENST00000559711 INAQ16352 499 aa11.3□□□□□ -0.6
USP3-213ENST00000559711 HYAL4Q2M3T9 481 aa11.3□□□□□ -0.6
USP3-213ENST00000559711 ACSM3Q53FZ2 586 aa11.3□□□□□ -0.6
USP3-213ENST00000559711 CREB3L2Q70SY1 520 aa11.3□□□□□ -0.6
USP3-213ENST00000559711 TRILQ7L0X0 811 aa11.3□□□□□ -0.6
USP3-213ENST00000559711 FAM220AQ7Z4H9 259 aa11.3□□□□□ -0.6
USP3-213ENST00000559711 GLB1L2Q8IW92 636 aa11.3□□□□□ -0.6
USP3-213ENST00000559711 YIPF7Q8N8F6 280 aa11.3□□□□□ -0.6
USP3-213ENST00000559711 NOXO1Q8NFA2 376 aa11.3□□□□□ -0.6
USP3-213ENST00000559711 OR8B4Q96RC9 309 aa11.3□□□□□ -0.6
USP3-213ENST00000559711 AMELYQ99218 206 aa11.3□□□□□ -0.6
Retrieved 100 of 20,778 RNA–protein pairs in 48.5 ms