RNA–Protein interactions for RNA: ENST00000494566.5

CCDC88B-210, Transcript of coiled-coil domain containing 88B, humanhuman

TSL 2

Gene CCDC88B, Length 2,909 nt, Biotype processed transcript, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88B-210ENST00000494566 ADGRL4Q9HBW9 690 aa15.15■□□□□ 0.02
CCDC88B-210ENST00000494566 HS3ST3A1Q9Y663 406 aa15.15■□□□□ 0.02
CCDC88B-210ENST00000494566 CABIN1Q9Y6J0 2220 aa15.15■□□□□ 0.02
CCDC88B-210ENST00000494566 A0A1B0GTH9 108 aa15.14■□□□□ 0.01
CCDC88B-210ENST00000494566 TSPAN4O14817 238 aa15.14■□□□□ 0.01
CCDC88B-210ENST00000494566 MT-ND5P03915 603 aa15.14■□□□□ 0.01
CCDC88B-210ENST00000494566 SNTB2Q13425 540 aaKnown RBP15.14■□□□□ 0.01
CCDC88B-210ENST00000494566 EXOSC2Q13868 293 aaKnown RBP15.14■□□□□ 0.01
CCDC88B-210ENST00000494566 TMEM44Q2T9K0 475 aa15.14■□□□□ 0.01
CCDC88B-210ENST00000494566 CDH24Q86UP0 819 aa15.14■□□□□ 0.01
CCDC88B-210ENST00000494566 RNF113BQ8IZP6 322 aaKnown RBP15.14■□□□□ 0.01
CCDC88B-210ENST00000494566 FTMTQ8N4E7 242 aa15.14■□□□□ 0.01
CCDC88B-210ENST00000494566 ZPLD1Q8TCW7 415 aa15.14■□□□□ 0.01
CCDC88B-210ENST00000494566 YIPF5Q969M3 257 aa15.14■□□□□ 0.01
CCDC88B-210ENST00000494566 ZC3HAV1LQ96H79 300 aaKnown RBP15.14■□□□□ 0.01
CCDC88B-210ENST00000494566 FOXN4Q96NZ1 517 aa15.14■□□□□ 0.01
CCDC88B-210ENST00000494566 SEMA6CQ9H3T2 930 aa15.14■□□□□ 0.01
CCDC88B-210ENST00000494566 RTTNQ86VV8 2226 aa15.14■□□□□ 0.01
CCDC88B-210ENST00000494566 A0A0G2JK05 382 aa15.14■□□□□ 0.01
CCDC88B-210ENST00000494566 KIR2DS5A0A0G2JLQ3 304 aa15.14■□□□□ 0.01
CCDC88B-210ENST00000494566 A0A0G2JNG1 304 aa15.14■□□□□ 0.01
CCDC88B-210ENST00000494566 MCIDASD6RGH6 385 aa15.14■□□□□ 0.01
CCDC88B-210ENST00000494566 KIR2DS3K7RE56 304 aa15.14■□□□□ 0.01
CCDC88B-210ENST00000494566 RAD1O60671 282 aa15.14■□□□□ 0.01
CCDC88B-210ENST00000494566 PTP4A3O75365 173 aa15.14■□□□□ 0.01
CCDC88B-210ENST00000494566 SIX6O95475 246 aa15.14■□□□□ 0.01
CCDC88B-210ENST00000494566 IFNA16P05015 189 aa15.14■□□□□ 0.01
CCDC88B-210ENST00000494566 SBK2P0C263 348 aa15.14■□□□□ 0.01
CCDC88B-210ENST00000494566 ANXA3P12429 323 aa15.14■□□□□ 0.01
CCDC88B-210ENST00000494566 HIST1H1CP16403 213 aaKnown RBP15.14■□□□□ 0.01
CCDC88B-210ENST00000494566 GFERP55789 205 aa15.14■□□□□ 0.01
CCDC88B-210ENST00000494566 FHL1Q13642 323 aa15.14■□□□□ 0.01
CCDC88B-210ENST00000494566 GALEQ14376 348 aa15.14■□□□□ 0.01
CCDC88B-210ENST00000494566 KIR2DS5Q14953 304 aa15.14■□□□□ 0.01
CCDC88B-210ENST00000494566 RAB30Q15771 203 aa15.14■□□□□ 0.01
CCDC88B-210ENST00000494566 ESCO2Q56NI9 601 aa15.14■□□□□ 0.01
CCDC88B-210ENST00000494566 KIAA0895LQ68EN5 471 aa15.14■□□□□ 0.01
CCDC88B-210ENST00000494566 OR51Q1Q8NH59 317 aa15.14■□□□□ 0.01
CCDC88B-210ENST00000494566 MMABQ96EY8 250 aaPredicted RBP15.14■□□□□ 0.01
CCDC88B-210ENST00000494566 TSSK2Q96PF2 358 aa15.14■□□□□ 0.01
CCDC88B-210ENST00000494566 CSTF2TQ9H0L4 616 aaKnown RBP eCLIP15.14■□□□□ 0.01
CCDC88B-210ENST00000494566 GHITMQ9H3K2 345 aa15.14■□□□□ 0.01
CCDC88B-210ENST00000494566 OR10H1Q9Y4A9 318 aa15.14■□□□□ 0.01
CCDC88B-210ENST00000494566 RP1P56715 2156 aa15.14■□□□□ 0.01
CCDC88B-210ENST00000494566 SELENOFO60613 162 aa15.13■□□□□ 0.01
CCDC88B-210ENST00000494566 H2AFB2P0C5Z0 115 aa15.13■□□□□ 0.01
CCDC88B-210ENST00000494566 POU3F2P20265 443 aaPredicted RBP15.13■□□□□ 0.01
CCDC88B-210ENST00000494566 ZNHIT3Q15649 155 aaPredicted RBP15.13■□□□□ 0.01
CCDC88B-210ENST00000494566 BICRALQ6AI39 1079 aa15.13■□□□□ 0.01
CCDC88B-210ENST00000494566 ZNF321PQ8N8H1 164 aa15.13■□□□□ 0.01
CCDC88B-210ENST00000494566 VSTM2LQ96N03 204 aa15.13■□□□□ 0.01
CCDC88B-210ENST00000494566 KLHDC3Q9BQ90 382 aa15.13■□□□□ 0.01
CCDC88B-210ENST00000494566 POLHQ9Y253 713 aa15.13■□□□□ 0.01
CCDC88B-210ENST00000494566 IER3IP1Q9Y5U9 82 aa15.13■□□□□ 0.01
CCDC88B-210ENST00000494566 SPAG17Q6Q759 2223 aa15.13■□□□□ 0.01
CCDC88B-210ENST00000494566 UNC13CQ8NB66 2214 aa15.13■□□□□ 0.01
CCDC88B-210ENST00000494566 C17orf51A8MQB3 221 aa15.13■□□□□ 0.01
CCDC88B-210ENST00000494566 SDC3O75056 442 aa15.13■□□□□ 0.01
CCDC88B-210ENST00000494566 MTNR1BP49286 362 aa15.13■□□□□ 0.01
CCDC88B-210ENST00000494566 RPS15P62841 145 aaKnown RBP15.13■□□□□ 0.01
CCDC88B-210ENST00000494566 NKAIN2Q5VXU1 208 aa15.13■□□□□ 0.01
CCDC88B-210ENST00000494566 SMRP1Q8NCR6 262 aa15.13■□□□□ 0.01
CCDC88B-210ENST00000494566 OR52B4Q8NGK2 314 aa15.13■□□□□ 0.01
CCDC88B-210ENST00000494566 C16orf52Q8NHV5 167 aa15.13■□□□□ 0.01
CCDC88B-210ENST00000494566 SLC35A3Q9Y2D2 325 aa15.13■□□□□ 0.01
CCDC88B-210ENST00000494566 MUC3AQ02505 3323 aa15.13■□□□□ 0.01
CCDC88B-210ENST00000494566 COL6A3P12111 3177 aa15.13■□□□□ 0.01
CCDC88B-210ENST00000494566 ZNF593O00488 134 aaPredicted RBP15.13■□□□□ 0.01
CCDC88B-210ENST00000494566 TFP02787 698 aa15.13■□□□□ 0.01
CCDC88B-210ENST00000494566 ALDOBP05062 364 aa15.13■□□□□ 0.01
CCDC88B-210ENST00000494566 PRAMEF17Q5VTA0 474 aa15.13■□□□□ 0.01
CCDC88B-210ENST00000494566 TIGD3Q6B0B8 471 aa15.13■□□□□ 0.01
CCDC88B-210ENST00000494566 ZNF613Q6PF04 617 aa15.13■□□□□ 0.01
CCDC88B-210ENST00000494566 ARHGEF39Q8N4T4 335 aa15.13■□□□□ 0.01
CCDC88B-210ENST00000494566 MED30Q96HR3 178 aa15.13■□□□□ 0.01
CCDC88B-210ENST00000494566 ASB6Q9NWX5 421 aa15.13■□□□□ 0.01
CCDC88B-210ENST00000494566 TRBV2A0A0J9YWF9 115 aa15.12■□□□□ 0.01
CCDC88B-210ENST00000494566 GPR171O14626 319 aa15.12■□□□□ 0.01
CCDC88B-210ENST00000494566 ZNF3P17036 446 aa15.12■□□□□ 0.01
CCDC88B-210ENST00000494566 ANXA7P20073 488 aaKnown RBP15.12■□□□□ 0.01
CCDC88B-210ENST00000494566 EDNRAP25101 427 aa15.12■□□□□ 0.01
CCDC88B-210ENST00000494566 RPL4P36578 427 aaKnown RBP15.12■□□□□ 0.01
CCDC88B-210ENST00000494566 CCR4P51679 360 aa15.12■□□□□ 0.01
CCDC88B-210ENST00000494566 ZNF767PQ75MW2 155 aa15.12■□□□□ 0.01
CCDC88B-210ENST00000494566 SNX33Q8WV41 574 aa15.12■□□□□ 0.01
CCDC88B-210ENST00000494566 KLHDC7BQ96G42 594 aa15.12■□□□□ 0.01
CCDC88B-210ENST00000494566 TGM7Q96PF1 710 aa15.12■□□□□ 0.01
CCDC88B-210ENST00000494566 TSPAN10Q9H1Z9 355 aaPredicted RBP15.12■□□□□ 0.01
CCDC88B-210ENST00000494566 ERVMER34-1Q9H9K5 563 aa15.12■□□□□ 0.01
CCDC88B-210ENST00000494566 PRTFDC1Q9NRG1 225 aa15.12■□□□□ 0.01
CCDC88B-210ENST00000494566 SOHLH2Q9NX45 425 aa15.12■□□□□ 0.01
CCDC88B-210ENST00000494566 TRABD2BA6NFA1 517 aa15.12■□□□□ 0.01
CCDC88B-210ENST00000494566 SLC22A31A6NKX4 558 aa15.12■□□□□ 0.01
CCDC88B-210ENST00000494566 ARPC1BO15143 372 aaKnown RBP15.12■□□□□ 0.01
CCDC88B-210ENST00000494566 PDGFAP04085 211 aa15.12■□□□□ 0.01
CCDC88B-210ENST00000494566 CT45A8P0DMV1 189 aa15.12■□□□□ 0.01
CCDC88B-210ENST00000494566 CT45A9P0DMV2 189 aa15.12■□□□□ 0.01
CCDC88B-210ENST00000494566 NPR2P20594 1047 aa15.12■□□□□ 0.01
CCDC88B-210ENST00000494566 GDNFP39905 211 aa15.12■□□□□ 0.01
CCDC88B-210ENST00000494566 GDI2P50395 445 aaKnown RBP15.12■□□□□ 0.01
Retrieved 100 of 20,778 RNA–protein pairs in 33.3 ms