RNA–Protein interactions for RNA: YMR309C

NIP1, Transcript of eIF3c subunit of the eukaryotic translation initiation factor 3 (eIF3), yeast

Gene NIP1, Length 2,439 nt, Biotype protein coding.

RNA		Protein				Prediction (catRAPID)		Interaction (RIP-Chip)
Gene	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	Detected Interaction
NIP1	YMR309C	CCM1	P48237	864 aa	Predicted RBP	0.96	□□□□□ -2.26
NIP1	YMR309C	ASI2	P53895	289 aa		0.96	□□□□□ -2.26
NIP1	YMR309C	SMX3	P54999	86 aa	Predicted RBP	0.96	□□□□□ -2.26
NIP1	YMR309C	SSL2	Q00578	843 aa		0.96	□□□□□ -2.26
NIP1	YMR309C	SHE9	Q04172	456 aa		0.96	□□□□□ -2.26
NIP1	YMR309C	LAT1	P12695	482 aa	Known RBP	0.96	□□□□□ -2.26
NIP1	YMR309C	SPO11	P23179	398 aa		0.96	□□□□□ -2.26
NIP1	YMR309C	TYE7	P33122	291 aa	Predicted RBP	0.96	□□□□□ -2.26
NIP1	YMR309C	YKL069W	P36088	180 aa		0.96	□□□□□ -2.26
NIP1	YMR309C	SAP190	P36123	1033 aa		0.96	□□□□□ -2.26
NIP1	YMR309C	YBR284W	P38150	797 aa		0.96	□□□□□ -2.26
NIP1	YMR309C	YHR078W	P38799	552 aa		0.96	□□□□□ -2.26
NIP1	YMR309C	GGA2	P38817	585 aa	Known RBP	0.96	□□□□□ -2.26
NIP1	YMR309C	SIT1	P39980	628 aa		0.96	□□□□□ -2.26
NIP1	YMR309C	LTP1	P40347	161 aa		0.96	□□□□□ -2.26
NIP1	YMR309C	IRR1	P40541	1150 aa		0.96	□□□□□ -2.26
NIP1	YMR309C	CCT7	P42943	550 aa	Known RBP	0.96	□□□□□ -2.26
NIP1	YMR309C	BNA3	P47039	444 aa	Known RBP	0.96	□□□□□ -2.26
NIP1	YMR309C	JSN1	P47135	1091 aa	Known RBP RIP-Chip data	0.96	□□□□□ -2.26	not detected
NIP1	YMR309C	NIT3	P49954	291 aa		0.96	□□□□□ -2.26
NIP1	YMR309C	TEL2	P53038	688 aa		0.96	□□□□□ -2.26
NIP1	YMR309C	HDA1	P53973	706 aa		0.96	□□□□□ -2.26
NIP1	YMR309C	YKR011C	Q02209	353 aa		0.96	□□□□□ -2.26
NIP1	YMR309C	SPO75	Q07798	868 aa		0.96	□□□□□ -2.26
NIP1	YMR309C	IRC13	Q08630	104 aa		0.96	□□□□□ -2.26
NIP1	YMR309C	YPR071W	Q12346	211 aa		0.96	□□□□□ -2.26
NIP1	YMR309C	OSH2	Q12451	1283 aa		0.96	□□□□□ -2.26
NIP1	YMR309C	ARE1	P25628	610 aa		0.95	□□□□□ -2.26
NIP1	YMR309C	NGG1	P32494	702 aa		0.95	□□□□□ -2.26
NIP1	YMR309C	EMP70	P32802	667 aa		0.95	□□□□□ -2.26
NIP1	YMR309C	REC104	P33323	182 aa		0.95	□□□□□ -2.26
NIP1	YMR309C	YBR184W	P38299	523 aa		0.95	□□□□□ -2.26
NIP1	YMR309C	YJL206C	P39529	758 aa		0.95	□□□□□ -2.26
NIP1	YMR309C	PAC2	P39937	518 aa		0.95	□□□□□ -2.26
NIP1	YMR309C	VHR1	P40522	640 aa		0.95	□□□□□ -2.26
NIP1	YMR309C	STB2	P46679	850 aa		0.95	□□□□□ -2.26
NIP1	YMR309C	HSV2	P50079	448 aa	Predicted RBP	0.95	□□□□□ -2.26
NIP1	YMR309C	YAP1802	P53309	568 aa		0.95	□□□□□ -2.26
NIP1	YMR309C	NAN1	Q02931	896 aa	Known RBP	0.95	□□□□□ -2.26
NIP1	YMR309C	BUL2	Q03758	920 aa	Known RBP	0.95	□□□□□ -2.26
NIP1	YMR309C	RIM13	Q03792	727 aa		0.95	□□□□□ -2.26
NIP1	YMR309C	SEG1	Q04279	960 aa		0.95	□□□□□ -2.26
NIP1	YMR309C	LCD1	Q04377	747 aa		0.95	□□□□□ -2.26
NIP1	YMR309C	EAF1	Q06337	982 aa		0.95	□□□□□ -2.26
NIP1	YMR309C	ATG11	Q12527	1178 aa		0.95	□□□□□ -2.26
NIP1	YMR309C	PRC1	P00729	532 aa		0.95	□□□□□ -2.26
NIP1	YMR309C	SIR3	P06701	978 aa		0.95	□□□□□ -2.26
NIP1	YMR309C	MPH2	P0CD99	609 aa		0.95	□□□□□ -2.26
NIP1	YMR309C	HOM2	P13663	365 aa	Known RBP	0.95	□□□□□ -2.26
NIP1	YMR309C	ERT1	P38140	529 aa		0.95	□□□□□ -2.26
NIP1	YMR309C	PZF1	P39933	429 aa		0.95	□□□□□ -2.26
NIP1	YMR309C	SPF1	P39986	1215 aa	Known RBP	0.95	□□□□□ -2.26
NIP1	YMR309C	TOK1	P40310	691 aa		0.95	□□□□□ -2.26
NIP1	YMR309C	BPL1	P48445	690 aa	Predicted RBP	0.95	□□□□□ -2.26
NIP1	YMR309C	UBC11	P52492	156 aa		0.95	□□□□□ -2.26
NIP1	YMR309C	PKH1	Q03407	766 aa		0.95	□□□□□ -2.26
NIP1	YMR309C	UBX5	Q06682	500 aa		0.95	□□□□□ -2.26
NIP1	YMR309C	YLR415C	O13578	112 aa		0.94	□□□□□ -2.26
NIP1	YMR309C	TOM70	P07213	617 aa	Known RBP	0.94	□□□□□ -2.26
NIP1	YMR309C	VPS34	P22543	875 aa		0.94	□□□□□ -2.26
NIP1	YMR309C	URA1	P28272	314 aa	Predicted RBP	0.94	□□□□□ -2.26
NIP1	YMR309C	CBR1	P38626	284 aa	Known RBP	0.94	□□□□□ -2.26
NIP1	YMR309C	BCD1	P38772	366 aa		0.94	□□□□□ -2.26
NIP1	YMR309C	NDC80	P40460	691 aa		0.94	□□□□□ -2.26
NIP1	YMR309C	HOS4	P40480	1083 aa		0.94	□□□□□ -2.26
NIP1	YMR309C	BAP3	P41815	604 aa		0.94	□□□□□ -2.26
NIP1	YMR309C	SHR5	P41912	237 aa		0.94	□□□□□ -2.26
NIP1	YMR309C	MRK1	P50873	501 aa		0.94	□□□□□ -2.26
NIP1	YMR309C	ERP6	P53198	216 aa		0.94	□□□□□ -2.26
NIP1	YMR309C	NRG1	Q03125	231 aa		0.94	□□□□□ -2.26
NIP1	YMR309C	MUS81	Q04149	632 aa	Predicted RBP	0.94	□□□□□ -2.26
NIP1	YMR309C	ASM4	Q05166	528 aa		0.94	□□□□□ -2.26
NIP1	YMR309C	RSC3	Q06639	885 aa		0.94	□□□□□ -2.26
NIP1	YMR309C	YDL124W	Q07551	312 aa	Known RBP	0.94	□□□□□ -2.26
NIP1	YMR309C	RGT2	Q12300	763 aa		0.94	□□□□□ -2.26
NIP1	YMR309C	HSP60	P19882	572 aa	Known RBP	0.94	□□□□□ -2.26
NIP1	YMR309C	CYS3	P31373	394 aa	Known RBP	0.94	□□□□□ -2.26
NIP1	YMR309C	HIR1	P32479	840 aa		0.94	□□□□□ -2.26
NIP1	YMR309C	HIS7	P33734	552 aa	Known RBP	0.94	□□□□□ -2.26
NIP1	YMR309C	UBS1	P38290	277 aa		0.94	□□□□□ -2.26
NIP1	YMR309C	SIC1	P38634	284 aa		0.94	□□□□□ -2.26
NIP1	YMR309C	SAK1	P38990	1142 aa		0.94	□□□□□ -2.26
NIP1	YMR309C	BDH2	P39713	417 aa		0.94	□□□□□ -2.26
NIP1	YMR309C	HUL4	P40985	892 aa		0.94	□□□□□ -2.26
NIP1	YMR309C	TIM54	P47045	478 aa		0.94	□□□□□ -2.26
NIP1	YMR309C	NOG2	P53742	486 aa	Known RBP	0.94	□□□□□ -2.26
NIP1	YMR309C	FMP25	Q08023	583 aa		0.94	□□□□□ -2.26
NIP1	YMR309C	OSW1	Q08692	278 aa		0.94	□□□□□ -2.26
NIP1	YMR309C	CIR2	Q08822	631 aa		0.94	□□□□□ -2.26
NIP1	YMR309C	RAD4	P14736	754 aa		0.93	□□□□□ -2.26
NIP1	YMR309C	DAL7	P21826	554 aa		0.93	□□□□□ -2.26
NIP1	YMR309C	PTP1	P25044	335 aa		0.93	□□□□□ -2.26
NIP1	YMR309C	GRX1	P25373	110 aa	Known RBP	0.93	□□□□□ -2.26
NIP1	YMR309C	STE5	P32917	917 aa		0.93	□□□□□ -2.26
NIP1	YMR309C	GLG1	P36143	616 aa		0.93	□□□□□ -2.26
NIP1	YMR309C	HRB1	P38922	454 aa	Known RBP RIP-Chip data	0.93	□□□□□ -2.26	not detected
NIP1	YMR309C	ARG2	P40360	574 aa		0.93	□□□□□ -2.26
NIP1	YMR309C	SSY5	P47002	699 aa		0.93	□□□□□ -2.26
NIP1	YMR309C	NET1	P47035	1189 aa		0.93	□□□□□ -2.26
NIP1	YMR309C	MTR3	P48240	250 aa	Predicted RBP	0.93	□□□□□ -2.26

Retrieved 100 of 5,963 RNA–protein pairs in 34.6 ms