RNA–Protein interactions for RNA: YMR223W

UBP8, Transcript of Ubiquitin-specific protease component of the SAGA acetylation complex, yeast

Gene UBP8, Length 1,416 nt, Biotype protein coding.

RNA		Protein				Prediction (catRAPID)		Interaction (RIP-Chip)
Gene	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	Detected Interaction
UBP8	YMR223W	EMC3	P36039	253 aa		5.08	□□□□□ -1.6
UBP8	YMR223W	LGE1	Q02796	332 aa	Known RBP	5.08	□□□□□ -1.6
UBP8	YMR223W	NRG1	Q03125	231 aa		5.08	□□□□□ -1.6
UBP8	YMR223W	ATG11	Q12527	1178 aa		5.08	□□□□□ -1.6
UBP8	YMR223W	LAT1	P12695	482 aa	Known RBP	5.07	□□□□□ -1.6
UBP8	YMR223W	CDC43	P18898	376 aa		5.07	□□□□□ -1.6
UBP8	YMR223W	SSY5	P47002	699 aa		5.07	□□□□□ -1.6
UBP8	YMR223W	DAM1	P53267	343 aa		5.07	□□□□□ -1.6
UBP8	YMR223W	UBX5	Q06682	500 aa		5.07	□□□□□ -1.6
UBP8	YMR223W	OSH2	Q12451	1283 aa		5.07	□□□□□ -1.6
UBP8	YMR223W	HCA4	P20448	770 aa	Known RBP	5.06	□□□□□ -1.6
UBP8	YMR223W	DAL7	P21826	554 aa		5.06	□□□□□ -1.6
UBP8	YMR223W	ILV6	P25605	309 aa	Known RBP	5.06	□□□□□ -1.6
UBP8	YMR223W	ARE1	P25628	610 aa		5.06	□□□□□ -1.6
UBP8	YMR223W	SAK1	P38990	1142 aa		5.06	□□□□□ -1.6
UBP8	YMR223W	UBP6	P43593	499 aa	Known RBP	5.06	□□□□□ -1.6
UBP8	YMR223W	HSV2	P50079	448 aa	Predicted RBP	5.06	□□□□□ -1.6
UBP8	YMR223W	SGO1	Q08490	590 aa		5.06	□□□□□ -1.6
UBP8	YMR223W	YOR022C	Q12204	715 aa		5.06	□□□□□ -1.6
UBP8	YMR223W	PCL5	P38794	229 aa		5.06	□□□□□ -1.6
UBP8	YMR223W	RSC3	Q06639	885 aa		5.06	□□□□□ -1.6
UBP8	YMR223W	REH1	Q06709	432 aa		5.06	□□□□□ -1.6
UBP8	YMR223W	PRC1	P00729	532 aa		5.05	□□□□□ -1.6
UBP8	YMR223W	HSP60	P19882	572 aa	Known RBP	5.05	□□□□□ -1.6
UBP8	YMR223W	PAM1	P37304	830 aa	Known RBP	5.05	□□□□□ -1.6
UBP8	YMR223W	SNM1	P40993	198 aa		5.05	□□□□□ -1.6
UBP8	YMR223W	PFA3	P42836	336 aa		5.05	□□□□□ -1.6
UBP8	YMR223W	YGR283C	P53336	341 aa	Predicted RBP	5.05	□□□□□ -1.6
UBP8	YMR223W	THI21	Q08975	551 aa		5.05	□□□□□ -1.6
UBP8	YMR223W	SUT2	Q12286	268 aa		5.05	□□□□□ -1.6
UBP8	YMR223W	TDP1	P38319	544 aa		5.04	□□□□□ -1.6
UBP8	YMR223W	SIC1	P38634	284 aa		5.04	□□□□□ -1.6
UBP8	YMR223W	GGA2	P38817	585 aa	Known RBP	5.04	□□□□□ -1.6
UBP8	YMR223W	FMP52	P40008	231 aa		5.04	□□□□□ -1.6
UBP8	YMR223W	TAD1	P53065	400 aa		5.04	□□□□□ -1.6
UBP8	YMR223W	VPS73	P53142	486 aa	Known RBP	5.04	□□□□□ -1.6
UBP8	YMR223W	IRC13	Q08630	104 aa		5.04	□□□□□ -1.6
UBP8	YMR223W	TOP3	P13099	656 aa		5.03	□□□□□ -1.6
UBP8	YMR223W	YBR259W	P38338	688 aa		5.03	□□□□□ -1.6
UBP8	YMR223W	SET5	P38890	526 aa	Known RBP	5.03	□□□□□ -1.6
UBP8	YMR223W	TAH11	P47112	604 aa		5.03	□□□□□ -1.6
UBP8	YMR223W	SSL2	Q00578	843 aa		5.03	□□□□□ -1.6
UBP8	YMR223W	COQ11	Q05892	277 aa		5.03	□□□□□ -1.6
UBP8	YMR223W	YDL124W	Q07551	312 aa	Known RBP	5.03	□□□□□ -1.6
UBP8	YMR223W	CIT1	P00890	479 aa		5.02	□□□□□ -1.61
UBP8	YMR223W	KIN3	P22209	435 aa		5.02	□□□□□ -1.61
UBP8	YMR223W	SAP190	P36123	1033 aa		5.02	□□□□□ -1.61
UBP8	YMR223W	YIL166C	P40445	542 aa		5.02	□□□□□ -1.61
UBP8	YMR223W	HUL4	P40985	892 aa		5.02	□□□□□ -1.61
UBP8	YMR223W	YAP1802	P53309	568 aa		5.02	□□□□□ -1.61
UBP8	YMR223W	LRS4	Q04087	347 aa	Known RBP	5.02	□□□□□ -1.61
UBP8	YMR223W	TGL5	Q12043	749 aa		5.02	□□□□□ -1.61
UBP8	YMR223W	TUB1	P09733	447 aa	Known RBP	5.01	□□□□□ -1.61
UBP8	YMR223W	DMC1	P25453	334 aa		5.01	□□□□□ -1.61
UBP8	YMR223W	ECM1	P39715	212 aa		5.01	□□□□□ -1.61
UBP8	YMR223W	HOS4	P40480	1083 aa		5.01	□□□□□ -1.61
UBP8	YMR223W	BAP3	P41815	604 aa		5.01	□□□□□ -1.61
UBP8	YMR223W	GYP8	P43570	497 aa		5.01	□□□□□ -1.61
UBP8	YMR223W	TEL2	P53038	688 aa		5.01	□□□□□ -1.61
UBP8	YMR223W	YDR514C	Q04408	483 aa		5.01	□□□□□ -1.61
UBP8	YMR223W	RAD4	P14736	754 aa		5	□□□□□ -1.61
UBP8	YMR223W	YCL002C	P25565	263 aa		5	□□□□□ -1.61
UBP8	YMR223W	PPZ2	P33329	710 aa		5	□□□□□ -1.61
UBP8	YMR223W	ZDS1	P50111	915 aa	Known RBP	5	□□□□□ -1.61
UBP8	YMR223W	UBC11	P52492	156 aa		5	□□□□□ -1.61
UBP8	YMR223W	IMO32	P53219	342 aa		5	□□□□□ -1.61
UBP8	YMR223W	ATP25	Q03153	612 aa		5	□□□□□ -1.61
UBP8	YMR223W	TAF8	Q03750	510 aa		5	□□□□□ -1.61
UBP8	YMR223W	GPR1	Q12361	961 aa		5	□□□□□ -1.61
UBP8	YMR223W	HIS7	P33734	552 aa	Known RBP	4.99	□□□□□ -1.61
UBP8	YMR223W	BCD1	P38772	366 aa		4.99	□□□□□ -1.61
UBP8	YMR223W	YJL049W	P47048	450 aa		4.99	□□□□□ -1.61
UBP8	YMR223W	YNL162W-A	Q3E7A8	72 aa		4.99	□□□□□ -1.61
UBP8	YMR223W	RIX1	P38883	763 aa	Predicted RBP	4.98	□□□□□ -1.61
UBP8	YMR223W	ALG2	P43636	503 aa		4.98	□□□□□ -1.61
UBP8	YMR223W	YGR125W	P53273	1036 aa		4.98	□□□□□ -1.61
UBP8	YMR223W	SMX3	P54999	86 aa	Predicted RBP	4.98	□□□□□ -1.61
UBP8	YMR223W	YBR182C-A	Q8TGU6	64 aa		4.98	□□□□□ -1.61
UBP8	YMR223W	BNR1	P40450	1375 aa		4.98	□□□□□ -1.61
UBP8	YMR223W	MET6	P05694	767 aa	Known RBP	4.97	□□□□□ -1.61
UBP8	YMR223W	TOM70	P07213	617 aa	Known RBP	4.97	□□□□□ -1.61
UBP8	YMR223W	CBR1	P38626	284 aa	Known RBP	4.97	□□□□□ -1.61
UBP8	YMR223W	REV7	P38927	245 aa		4.97	□□□□□ -1.61
UBP8	YMR223W	MTR3	P48240	250 aa	Predicted RBP	4.97	□□□□□ -1.61
UBP8	YMR223W	ZIP2	P53061	704 aa		4.97	□□□□□ -1.61
UBP8	YMR223W	SIR3	P06701	978 aa		4.97	□□□□□ -1.61
UBP8	YMR223W	RLP7	P40693	322 aa	Known RBP	4.97	□□□□□ -1.61
UBP8	YMR223W	GAD1	Q04792	585 aa		4.97	□□□□□ -1.61
UBP8	YMR223W	ASM4	Q05166	528 aa		4.97	□□□□□ -1.61
UBP8	YMR223W	ARO10	Q06408	635 aa		4.97	□□□□□ -1.61
UBP8	YMR223W	TAF3	Q12297	353 aa		4.97	□□□□□ -1.61
UBP8	YMR223W	SHR5	P41912	237 aa		4.96	□□□□□ -1.62
UBP8	YMR223W	TIM54	P47045	478 aa		4.96	□□□□□ -1.62
UBP8	YMR223W	MET7	Q08645	548 aa		4.96	□□□□□ -1.62
UBP8	YMR223W	DIF1	O13577	133 aa		4.95	□□□□□ -1.62
UBP8	YMR223W	HIR1	P32479	840 aa		4.95	□□□□□ -1.62
UBP8	YMR223W	PEX2	P32800	271 aa		4.95	□□□□□ -1.62
UBP8	YMR223W	YHR020W	P38708	688 aa	Known RBP	4.95	□□□□□ -1.62
UBP8	YMR223W	HXT16	P47185	567 aa		4.95	□□□□□ -1.62
UBP8	YMR223W	YBP2	P53169	641 aa		4.95	□□□□□ -1.62

Retrieved 100 of 5,963 RNA–protein pairs in 10 ms