RNA–Protein interactions for RNA: YML031W

NDC1, Transcript of Subunit of the transmembrane ring of the nuclear pore complex (NPC), yeast

Gene NDC1, Length 1,968 nt, Biotype protein coding.

RNA		Protein				Prediction (catRAPID)		Interaction (RIP-Chip)
Gene	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	Detected Interaction
NDC1	YML031W	PEX34	P25584	144 aa		5.69	□□□□□ -1.5
NDC1	YML031W	SEG2	P34250	1132 aa		5.69	□□□□□ -1.5
NDC1	YML031W	RFC5	P38251	354 aa		5.69	□□□□□ -1.5
NDC1	YML031W	BDH2	P39713	417 aa		5.69	□□□□□ -1.5
NDC1	YML031W	ULI1	P43604	169 aa		5.69	□□□□□ -1.5
NDC1	YML031W	RPL4B	P49626	362 aa	Known RBP	5.69	□□□□□ -1.5
NDC1	YML031W	ORC5	P50874	479 aa		5.69	□□□□□ -1.5
NDC1	YML031W	UBA2	P52488	636 aa		5.69	□□□□□ -1.5
NDC1	YML031W	PIL1	P53252	339 aa	Known RBP	5.69	□□□□□ -1.5
NDC1	YML031W	STP1	Q00947	519 aa		5.69	□□□□□ -1.5
NDC1	YML031W	VPS20	Q04272	221 aa		5.69	□□□□□ -1.5
NDC1	YML031W	ELG1	Q12050	791 aa		5.69	□□□□□ -1.5
NDC1	YML031W	LAA1	P39526	2014 aa		5.69	□□□□□ -1.5
NDC1	YML031W	RPS9A	O13516	197 aa	Known RBP	5.68	□□□□□ -1.5
NDC1	YML031W	TRP2	P00899	507 aa	Known RBP	5.68	□□□□□ -1.5
NDC1	YML031W	PCK1	P10963	549 aa		5.68	□□□□□ -1.5
NDC1	YML031W	TAF13	P11747	167 aa		5.68	□□□□□ -1.5
NDC1	YML031W	YBR284W	P38150	797 aa		5.68	□□□□□ -1.5
NDC1	YML031W	THI6	P41835	540 aa		5.68	□□□□□ -1.5
NDC1	YML031W	CIR1	P42940	261 aa		5.68	□□□□□ -1.5
NDC1	YML031W	SEC5	P89102	971 aa		5.68	□□□□□ -1.5
NDC1	YML031W	NSE1	Q07913	336 aa		5.68	□□□□□ -1.5
NDC1	YML031W	NOP58	Q12499	511 aa	Known RBP	5.68	□□□□□ -1.5
NDC1	YML031W	APM4	Q99186	491 aa		5.68	□□□□□ -1.5
NDC1	YML031W	ACC1	Q00955	2233 aa	Known RBP	5.67	□□□□□ -1.5
NDC1	YML031W	FOB1	O13329	566 aa		5.67	□□□□□ -1.5
NDC1	YML031W	GAL80	P04387	435 aa		5.67	□□□□□ -1.5
NDC1	YML031W	RPL19A	P0CX82	189 aa	Known RBP	5.67	□□□□□ -1.5
NDC1	YML031W	RPL19B	P0CX83	189 aa	Predicted RBP	5.67	□□□□□ -1.5
NDC1	YML031W	PGI1	P12709	554 aa	Known RBP	5.67	□□□□□ -1.5
NDC1	YML031W	ISY1	P21374	235 aa	Predicted RBP	5.67	□□□□□ -1.5
NDC1	YML031W	VPS3	P23643	1011 aa		5.67	□□□□□ -1.5
NDC1	YML031W	TTI1	P36097	1038 aa		5.67	□□□□□ -1.5
NDC1	YML031W	RGD1	P38339	666 aa		5.67	□□□□□ -1.5
NDC1	YML031W	DAK2	P43550	591 aa		5.67	□□□□□ -1.5
NDC1	YML031W	FYV8	P46949	817 aa	Known RBP	5.67	□□□□□ -1.5
NDC1	YML031W	HST1	P53685	503 aa		5.67	□□□□□ -1.5
NDC1	YML031W	SFB2	P53953	876 aa		5.67	□□□□□ -1.5
NDC1	YML031W	SLG1	P54867	378 aa		5.67	□□□□□ -1.5
NDC1	YML031W	MFB1	Q04922	465 aa		5.67	□□□□□ -1.5
NDC1	YML031W	FMP25	Q08023	583 aa		5.67	□□□□□ -1.5
NDC1	YML031W	SPE3	Q12074	293 aa	Known RBP	5.67	□□□□□ -1.5
NDC1	YML031W	SPO11	P23179	398 aa		5.67	□□□□□ -1.5
NDC1	YML031W	RPN12	P32496	274 aa		5.67	□□□□□ -1.5
NDC1	YML031W	PTC4	P38089	393 aa		5.67	□□□□□ -1.5
NDC1	YML031W	RVS167	P39743	482 aa	Known RBP	5.67	□□□□□ -1.5
NDC1	YML031W	UBP5	P39944	805 aa		5.67	□□□□□ -1.5
NDC1	YML031W	VTC2	P43585	828 aa		5.67	□□□□□ -1.5
NDC1	YML031W	TAF1	P46677	1066 aa		5.67	□□□□□ -1.5
NDC1	YML031W	ASN1	P49089	572 aa	Known RBP	5.67	□□□□□ -1.5
NDC1	YML031W	CTF3	Q12748	733 aa		5.67	□□□□□ -1.5
NDC1	YML031W	RPS14A	P06367	137 aa	Known RBP	5.66	□□□□□ -1.5
NDC1	YML031W	SSB1	P11484	613 aa	Known RBP	5.66	□□□□□ -1.5
NDC1	YML031W	MCM2	P29469	868 aa		5.66	□□□□□ -1.5
NDC1	YML031W	RPS14B	P39516	138 aa	Known RBP	5.66	□□□□□ -1.5
NDC1	YML031W	SSB2	P40150	613 aa	Known RBP	5.66	□□□□□ -1.5
NDC1	YML031W	POL31	P46957	487 aa		5.66	□□□□□ -1.5
NDC1	YML031W	ATH1	P48016	1211 aa		5.66	□□□□□ -1.5
NDC1	YML031W	CUE3	P53137	624 aa	Known RBP	5.66	□□□□□ -1.5
NDC1	YML031W	KRE33	P53914	1056 aa	Known RBP	5.66	□□□□□ -1.5
NDC1	YML031W	HRQ1	Q05549	1077 aa		5.66	□□□□□ -1.5
NDC1	YML031W	YDL057W	Q07379	328 aa		5.66	□□□□□ -1.5
NDC1	YML031W	LEA1	Q08963	238 aa	Predicted RBP	5.66	□□□□□ -1.5
NDC1	YML031W	CDC53	Q12018	815 aa	Known RBP	5.66	□□□□□ -1.5
NDC1	YML031W	YPL150W	Q12152	901 aa		5.66	□□□□□ -1.5
NDC1	YML031W	CPA2	P03965	1118 aa	Known RBP	5.66	□□□□□ -1.5
NDC1	YML031W	MCM3	P24279	971 aa	Known RBP	5.66	□□□□□ -1.5
NDC1	YML031W	PEP7	P32609	515 aa		5.66	□□□□□ -1.5
NDC1	YML031W	PPS1	P38148	807 aa		5.66	□□□□□ -1.5
NDC1	YML031W	YHR054C	P38780	354 aa		5.66	□□□□□ -1.5
NDC1	YML031W	SNU56	Q03782	492 aa	Known RBP	5.66	□□□□□ -1.5
NDC1	YML031W	YHM2	Q04013	314 aa		5.66	□□□□□ -1.5
NDC1	YML031W	PEX19	Q07418	342 aa		5.66	□□□□□ -1.5
NDC1	YML031W	YPL277C	Q08989	487 aa		5.66	□□□□□ -1.5
NDC1	YML031W	MEX67	Q99257	599 aa	Known RBP	5.66	□□□□□ -1.5
NDC1	YML031W	HIS4	P00815	799 aa	Known RBP	5.65	□□□□□ -1.51
NDC1	YML031W	RPL17A	P05740	184 aa	Known RBP	5.65	□□□□□ -1.51
NDC1	YML031W	ASP3-2	P0CX77	362 aa		5.65	□□□□□ -1.51
NDC1	YML031W	ASP3-3	P0CX78	362 aa		5.65	□□□□□ -1.51
NDC1	YML031W	ASP3-4	P0CX79	362 aa		5.65	□□□□□ -1.51
NDC1	YML031W	ASP3-1	P0CZ17	362 aa		5.65	□□□□□ -1.51
NDC1	YML031W	PHO8	P11491	566 aa		5.65	□□□□□ -1.51
NDC1	YML031W	FUS1	P11710	512 aa		5.65	□□□□□ -1.51
NDC1	YML031W	URA1	P28272	314 aa	Predicted RBP	5.65	□□□□□ -1.51
NDC1	YML031W	RPL17B	P46990	184 aa	Known RBP	5.65	□□□□□ -1.51
NDC1	YML031W	NOP13	P53883	403 aa	Known RBP RIP-Chip data	5.65	□□□□□ -1.51	not detected
NDC1	YML031W	TIF35	Q04067	274 aa	Known RBP	5.65	□□□□□ -1.51
NDC1	YML031W	UTP14	Q04500	899 aa	Known RBP	5.65	□□□□□ -1.51
NDC1	YML031W	SGT2	Q12118	346 aa	Known RBP	5.65	□□□□□ -1.51
NDC1	YML031W	KEX1	P09620	729 aa		5.64	□□□□□ -1.51
NDC1	YML031W	RPL40A	P0CH08	128 aa	Known RBP	5.64	□□□□□ -1.51
NDC1	YML031W	RPL40B	P0CH09	128 aa	Known RBP	5.64	□□□□□ -1.51
NDC1	YML031W	BIK1	P11709	440 aa		5.64	□□□□□ -1.51
NDC1	YML031W	RGP1	P16664	663 aa		5.64	□□□□□ -1.51
NDC1	YML031W	SLA2	P33338	968 aa		5.64	□□□□□ -1.51
NDC1	YML031W	POL12	P38121	705 aa	Predicted RBP	5.64	□□□□□ -1.51
NDC1	YML031W	DUG2	P38149	878 aa		5.64	□□□□□ -1.51
NDC1	YML031W	FMO1	P38866	432 aa		5.64	□□□□□ -1.51
NDC1	YML031W	ZAP1	P47043	880 aa		5.64	□□□□□ -1.51
NDC1	YML031W	VPS25	P47142	202 aa		5.64	□□□□□ -1.51

Retrieved 100 of 5,963 RNA–protein pairs in 9.7 ms