RNA–Protein interactions for RNA: YKR056W

TRM2, Transcript of tRNA methyltransferase, yeast

Gene TRM2, Length 1,920 nt, Biotype protein coding.

RNA		Protein				Prediction (catRAPID)		Interaction (RIP-Chip)
Gene	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	Detected Interaction
TRM2	YKR056W	SAP185	P40856	1058 aa		3.11	□□□□□ -1.91
TRM2	YKR056W	UBC9	P50623	157 aa	Predicted RBP	3.11	□□□□□ -1.91
TRM2	YKR056W	UBA2	P52488	636 aa		3.11	□□□□□ -1.91
TRM2	YKR056W	DAM1	P53267	343 aa		3.11	□□□□□ -1.91
TRM2	YKR056W	REH1	Q06709	432 aa		3.11	□□□□□ -1.91
TRM2	YKR056W	YPL260W	Q08977	551 aa		3.11	□□□□□ -1.91
TRM2	YKR056W	ELG1	Q12050	791 aa		3.11	□□□□□ -1.91
TRM2	YKR056W	SPO21	Q12411	609 aa		3.11	□□□□□ -1.91
TRM2	YKR056W	FOB1	O13329	566 aa		3.11	□□□□□ -1.91
TRM2	YKR056W	PFK1	P16861	987 aa	Known RBP	3.11	□□□□□ -1.91
TRM2	YKR056W	YCL002C	P25565	263 aa		3.11	□□□□□ -1.91
TRM2	YKR056W	BEM3	P32873	1128 aa		3.11	□□□□□ -1.91
TRM2	YKR056W	MNT3	P40549	630 aa		3.11	□□□□□ -1.91
TRM2	YKR056W	RET2	P43621	546 aa		3.11	□□□□□ -1.91
TRM2	YKR056W	ENV11	P53246	860 aa		3.11	□□□□□ -1.91
TRM2	YKR056W	SRP1	Q02821	542 aa	Known RBP	3.11	□□□□□ -1.91
TRM2	YKR056W	VPS30	Q02948	557 aa		3.11	□□□□□ -1.91
TRM2	YKR056W	SKY1	Q03656	742 aa		3.11	□□□□□ -1.91
TRM2	YKR056W	NHX1	Q04121	633 aa		3.11	□□□□□ -1.91
TRM2	YKR056W	RSA3	Q05942	220 aa	Known RBP	3.11	□□□□□ -1.91
TRM2	YKR056W	HFI1	Q12060	488 aa		3.11	□□□□□ -1.91
TRM2	YKR056W	YOL114C	Q12322	202 aa		3.11	□□□□□ -1.91
TRM2	YKR056W	TAD3	Q9URQ3	322 aa		3.11	□□□□□ -1.91
TRM2	YKR056W	SEC18	P18759	758 aa	Known RBP	3.1	□□□□□ -1.91
TRM2	YKR056W	NFS1	P25374	497 aa		3.1	□□□□□ -1.91
TRM2	YKR056W	PRO1	P32264	428 aa		3.1	□□□□□ -1.91
TRM2	YKR056W	YKU70	P32807	602 aa		3.1	□□□□□ -1.91
TRM2	YKR056W	MAE1	P36013	669 aa	Known RBP	3.1	□□□□□ -1.91
TRM2	YKR056W	NMD3	P38861	518 aa	Known RBP	3.1	□□□□□ -1.91
TRM2	YKR056W	IES1	P43579	692 aa		3.1	□□□□□ -1.91
TRM2	YKR056W	VPS53	P47061	822 aa		3.1	□□□□□ -1.91
TRM2	YKR056W	CCM1	P48237	864 aa	Predicted RBP	3.1	□□□□□ -1.91
TRM2	YKR056W	YGR153W	P48238	217 aa		3.1	□□□□□ -1.91
TRM2	YKR056W	SLD3	P53135	668 aa		3.1	□□□□□ -1.91
TRM2	YKR056W	MEP3	P53390	489 aa		3.1	□□□□□ -1.91
TRM2	YKR056W	CNM67	P53865	581 aa	Known RBP	3.1	□□□□□ -1.91
TRM2	YKR056W	LRS4	Q04087	347 aa	Known RBP	3.1	□□□□□ -1.91
TRM2	YKR056W	SNU66	Q12420	587 aa	Predicted RBP	3.1	□□□□□ -1.91
TRM2	YKR056W	YBR182C-A	Q8TGU6	64 aa		3.1	□□□□□ -1.91
TRM2	YKR056W	BI4	P03879	638 aa		3.09	□□□□□ -1.91
TRM2	YKR056W	THI80	P35202	319 aa		3.09	□□□□□ -1.91
TRM2	YKR056W	OAF3	P36023	863 aa		3.09	□□□□□ -1.91
TRM2	YKR056W	UGA2	P38067	497 aa		3.09	□□□□□ -1.91
TRM2	YKR056W	MAL31	P38156	614 aa		3.09	□□□□□ -1.91
TRM2	YKR056W	ESL1	P40456	1118 aa		3.09	□□□□□ -1.91
TRM2	YKR056W	GYP7	P48365	746 aa		3.09	□□□□□ -1.91
TRM2	YKR056W	ELA1	P53861	379 aa	Predicted RBP	3.09	□□□□□ -1.91
TRM2	YKR056W	SFB2	P53953	876 aa		3.09	□□□□□ -1.91
TRM2	YKR056W	YDR514C	Q04408	483 aa		3.09	□□□□□ -1.91
TRM2	YKR056W	RCL1	Q08096	367 aa	Predicted RBP	3.09	□□□□□ -1.91
TRM2	YKR056W	MDM38	Q08179	573 aa		3.09	□□□□□ -1.91
TRM2	YKR056W	ACM1	Q08981	209 aa		3.09	□□□□□ -1.91
TRM2	YKR056W	NSI1	Q12457	570 aa		3.09	□□□□□ -1.91
TRM2	YKR056W	APM4	Q99186	491 aa		3.09	□□□□□ -1.91
TRM2	YKR056W	CDC31	P06704	161 aa	Known RBP	3.09	□□□□□ -1.92
TRM2	YKR056W	ENA1	P13587	1091 aa		3.09	□□□□□ -1.92
TRM2	YKR056W	GFA1	P14742	717 aa	Known RBP	3.09	□□□□□ -1.92
TRM2	YKR056W	SNF5	P18480	905 aa		3.09	□□□□□ -1.92
TRM2	YKR056W	HOP1	P20050	605 aa		3.09	□□□□□ -1.92
TRM2	YKR056W	GFD2	P25370	566 aa	Known RBP	3.09	□□□□□ -1.92
TRM2	YKR056W	IMP2'	P32351	346 aa		3.09	□□□□□ -1.92
TRM2	YKR056W	TSA1	P34760	196 aa	Known RBP	3.09	□□□□□ -1.92
TRM2	YKR056W	MNN4	P36044	1178 aa		3.09	□□□□□ -1.92
TRM2	YKR056W	FLR1	P38124	548 aa		3.09	□□□□□ -1.92
TRM2	YKR056W	RKM3	P38222	552 aa		3.09	□□□□□ -1.92
TRM2	YKR056W	HSE1	P38753	452 aa		3.09	□□□□□ -1.92
TRM2	YKR056W	GIC1	P38785	314 aa		3.09	□□□□□ -1.92
TRM2	YKR056W	PAP2	P53632	584 aa	Known RBP	3.09	□□□□□ -1.92
TRM2	YKR056W	ENA2	Q01896	1091 aa		3.09	□□□□□ -1.92
TRM2	YKR056W	PEX15	Q08215	383 aa		3.09	□□□□□ -1.92
TRM2	YKR056W	LAP2	Q10740	671 aa		3.09	□□□□□ -1.92
TRM2	YKR056W	DCS2	Q12123	353 aa		3.09	□□□□□ -1.92
TRM2	YKR056W	MED1	Q12321	566 aa		3.09	□□□□□ -1.92
TRM2	YKR056W	ENA5	Q12691	1091 aa		3.09	□□□□□ -1.92
TRM2	YKR056W	MSM1	P22438	575 aa		3.08	□□□□□ -1.92
TRM2	YKR056W	APL2	P36000	726 aa	Predicted RBP	3.08	□□□□□ -1.92
TRM2	YKR056W	YKR051W	P36142	418 aa		3.08	□□□□□ -1.92
TRM2	YKR056W	SHM2	P37291	469 aa	Known RBP	3.08	□□□□□ -1.92
TRM2	YKR056W	TDA3	P38758	523 aa		3.08	□□□□□ -1.92
TRM2	YKR056W	EMP65	P40085	556 aa		3.08	□□□□□ -1.92
TRM2	YKR056W	GTR1	Q00582	310 aa		3.08	□□□□□ -1.92
TRM2	YKR056W	SRT1	Q03175	343 aa		3.08	□□□□□ -1.92
TRM2	YKR056W	EAR1	Q03212	550 aa		3.08	□□□□□ -1.92
TRM2	YKR056W	NEW1	Q08972	1196 aa	Known RBP	3.08	□□□□□ -1.92
TRM2	YKR056W	CLF1	Q12309	687 aa	Predicted RBP	3.08	□□□□□ -1.92
TRM2	YKR056W	NOP56	Q12460	504 aa	Known RBP RIP-Chip data	3.08	□□□□□ -1.92	not detected
TRM2	YKR056W	Q0142	Q9ZZW4	58 aa		3.08	□□□□□ -1.92
TRM2	YKR056W	INH1	P01097	85 aa		3.07	□□□□□ -1.92
TRM2	YKR056W	DAL7	P21826	554 aa		3.07	□□□□□ -1.92
TRM2	YKR056W	PET309	P32522	965 aa	Predicted RBP	3.07	□□□□□ -1.92
TRM2	YKR056W	GPT2	P36148	743 aa		3.07	□□□□□ -1.92
TRM2	YKR056W	YKR078W	P36158	585 aa	Known RBP	3.07	□□□□□ -1.92
TRM2	YKR056W	ATG14	P38270	344 aa		3.07	□□□□□ -1.92
TRM2	YKR056W	RPN3	P40016	523 aa	Known RBP	3.07	□□□□□ -1.92
TRM2	YKR056W	YJL045W	P47052	634 aa		3.07	□□□□□ -1.92
TRM2	YKR056W	UPF3	P48412	387 aa	Known RBP	3.07	□□□□□ -1.92
TRM2	YKR056W	EIS1	Q05050	843 aa	Known RBP	3.07	□□□□□ -1.92
TRM2	YKR056W	YLR257W	Q06146	321 aa	Known RBP	3.07	□□□□□ -1.92
TRM2	YKR056W	HIM1	Q06674	414 aa		3.07	□□□□□ -1.92
TRM2	YKR056W	SDH5	Q08230	162 aa		3.07	□□□□□ -1.92

Retrieved 100 of 5,963 RNA–protein pairs in 56.1 ms