RNA–Protein interactions for RNA: YDR228C

PCF11, Transcript of mRNA 3' end processing factor, yeastyeast

Gene PCF11, Length 1,881 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (RIP-Chip)
Gene Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score Detected Interaction
PCF11YDR228C DAM1P53267 343 aa3.09□□□□□ -1.92
PCF11YDR228C YGR125WP53273 1036 aa3.09□□□□□ -1.92
PCF11YDR228C YOR022CQ12204 715 aa3.09□□□□□ -1.92
PCF11YDR228C YBR182C-AQ8TGU6 64 aa3.09□□□□□ -1.92
PCF11YDR228C YHL017WP38745 532 aa3.08□□□□□ -1.92
PCF11YDR228C GGA2P38817 585 aaKnown RBP3.08□□□□□ -1.92
PCF11YDR228C SDS3P40505 327 aa3.08□□□□□ -1.92
PCF11YDR228C HUL4P40985 892 aa3.08□□□□□ -1.92
PCF11YDR228C STU2P46675 888 aa3.08□□□□□ -1.92
PCF11YDR228C SSY5P47002 699 aa3.08□□□□□ -1.92
PCF11YDR228C TIM54P47045 478 aa3.08□□□□□ -1.92
PCF11YDR228C HXT16P47185 567 aa3.08□□□□□ -1.92
PCF11YDR228C AMA1P50082 593 aa3.08□□□□□ -1.92
PCF11YDR228C RTA1P53047 317 aa3.08□□□□□ -1.92
PCF11YDR228C GND2P53319 492 aa3.08□□□□□ -1.92
PCF11YDR228C ATP25Q03153 612 aa3.08□□□□□ -1.92
PCF11YDR228C PKH1Q03407 766 aa3.08□□□□□ -1.92
PCF11YDR228C YDL124WQ07551 312 aaKnown RBP3.08□□□□□ -1.92
PCF11YDR228C MSL5Q12186 476 aaKnown RBP RIP-Chip data3.08□□□□□ -1.92not detected
PCF11YDR228C YLR415CO13578 112 aa3.07□□□□□ -1.92
PCF11YDR228C CAN1P04817 590 aa3.07□□□□□ -1.92
PCF11YDR228C PZF1P39933 429 aa3.07□□□□□ -1.92
PCF11YDR228C RSP5P39940 809 aaKnown RBP3.07□□□□□ -1.92
PCF11YDR228C PFA3P42836 336 aa3.07□□□□□ -1.92
PCF11YDR228C YJL163CP46996 555 aa3.07□□□□□ -1.92
PCF11YDR228C HUL5P53119 910 aa3.07□□□□□ -1.92
PCF11YDR228C REH1Q06709 432 aa3.07□□□□□ -1.92
PCF11YDR228C NGG1P32494 702 aa3.07□□□□□ -1.92
PCF11YDR228C SIC1P38634 284 aa3.07□□□□□ -1.92
PCF11YDR228C ALG2P43636 503 aa3.07□□□□□ -1.92
PCF11YDR228C DAS1P47005 663 aa3.07□□□□□ -1.92
PCF11YDR228C YML122CQ03207 126 aa3.07□□□□□ -1.92
PCF11YDR228C BDF2Q07442 638 aa3.07□□□□□ -1.92
PCF11YDR228C PRC1P00729 532 aa3.06□□□□□ -1.92
PCF11YDR228C LAT1P12695 482 aaKnown RBP3.06□□□□□ -1.92
PCF11YDR228C SPC42P36094 363 aa3.06□□□□□ -1.92
PCF11YDR228C SAK1P38990 1142 aa3.06□□□□□ -1.92
PCF11YDR228C HBT1Q07653 1046 aaKnown RBP3.06□□□□□ -1.92
PCF11YDR228C SPC29P33419 253 aa3.05□□□□□ -1.92
PCF11YDR228C SET5P38890 526 aaKnown RBP3.05□□□□□ -1.92
PCF11YDR228C HOS4P40480 1083 aa3.05□□□□□ -1.92
PCF11YDR228C YIR042CP40586 236 aa3.05□□□□□ -1.92
PCF11YDR228C BAP3P41815 604 aa3.05□□□□□ -1.92
PCF11YDR228C NOP7P53261 605 aaKnown RBP3.05□□□□□ -1.92
PCF11YDR228C MET7Q08645 548 aa3.05□□□□□ -1.92
PCF11YDR228C SUT2Q12286 268 aa3.05□□□□□ -1.92
PCF11YDR228C ATG11Q12527 1178 aa3.05□□□□□ -1.92
PCF11YDR228C TOM70P07213 617 aaKnown RBP3.05□□□□□ -1.92
PCF11YDR228C RLP7P40693 322 aaKnown RBP3.05□□□□□ -1.92
PCF11YDR228C ZIP2P53061 704 aa3.05□□□□□ -1.92
PCF11YDR228C NRG1Q03125 231 aa3.05□□□□□ -1.92
PCF11YDR228C YDR514CQ04408 483 aa3.05□□□□□ -1.92
PCF11YDR228C ASM4Q05166 528 aa3.05□□□□□ -1.92
PCF11YDR228C RSC3Q06639 885 aa3.05□□□□□ -1.92
PCF11YDR228C IRC13Q08630 104 aa3.05□□□□□ -1.92
PCF11YDR228C TGL5Q12043 749 aa3.05□□□□□ -1.92
PCF11YDR228C MRH1Q12117 320 aaPredicted RBP3.05□□□□□ -1.92
PCF11YDR228C ATF1P40353 525 aa3.04□□□□□ -1.92
PCF11YDR228C RIA1P53893 1110 aa3.04□□□□□ -1.92
PCF11YDR228C NSE3Q05541 303 aa3.04□□□□□ -1.92
PCF11YDR228C YBR259WP38338 688 aa3.03□□□□□ -1.92
PCF11YDR228C ECM1P39715 212 aa3.03□□□□□ -1.92
PCF11YDR228C ZDS1P50111 915 aaKnown RBP3.03□□□□□ -1.92
PCF11YDR228C MAL11P53048 616 aa3.03□□□□□ -1.92
PCF11YDR228C SGO1Q08490 590 aa3.03□□□□□ -1.92
PCF11YDR228C PHR1P05066 565 aaKnown RBP RIP-Chip data3.03□□□□□ -1.93not detected
PCF11YDR228C STI1P15705 589 aaKnown RBP RIP-Chip data3.03□□□□□ -1.93not detected
PCF11YDR228C BCD1P38772 366 aa3.03□□□□□ -1.93
PCF11YDR228C FMP52P40008 231 aa3.03□□□□□ -1.93
PCF11YDR228C UBC11P52492 156 aa3.03□□□□□ -1.93
PCF11YDR228C TEX1P53851 422 aaKnown RBP3.03□□□□□ -1.93
PCF11YDR228C YDR338CQ05497 695 aa3.03□□□□□ -1.93
PCF11YDR228C SIR3P06701 978 aa3.02□□□□□ -1.93
PCF11YDR228C GAL11P19659 1081 aa3.02□□□□□ -1.93
PCF11YDR228C SAP190P36123 1033 aa3.02□□□□□ -1.93
PCF11YDR228C GDH3P39708 457 aa3.02□□□□□ -1.93
PCF11YDR228C HSV2P50079 448 aaPredicted RBP3.02□□□□□ -1.93
PCF11YDR228C DIF1O13577 133 aa3.01□□□□□ -1.93
PCF11YDR228C HIR1P32479 840 aa3.01□□□□□ -1.93
PCF11YDR228C MTC2P34246 357 aa3.01□□□□□ -1.93
PCF11YDR228C CUE2P36075 443 aaKnown RBP3.01□□□□□ -1.93
PCF11YDR228C PCL5P38794 229 aa3.01□□□□□ -1.93
PCF11YDR228C TEL2P53038 688 aa3.01□□□□□ -1.93
PCF11YDR228C CRR1Q05790 422 aa3.01□□□□□ -1.93
PCF11YDR228C CHZ1P40019 153 aaPredicted RBP3.01□□□□□ -1.93
PCF11YDR228C TAH11P47112 604 aa3.01□□□□□ -1.93
PCF11YDR228C MTR3P48240 250 aaPredicted RBP3.01□□□□□ -1.93
PCF11YDR228C VPS73P53142 486 aaKnown RBP3.01□□□□□ -1.93
PCF11YDR228C NDJ1Q12366 352 aa3.01□□□□□ -1.93
PCF11YDR228C PER1P25625 357 aa3□□□□□ -1.93
PCF11YDR228C MCD4P36051 919 aa3□□□□□ -1.93
PCF11YDR228C SHR5P41912 237 aa3□□□□□ -1.93
PCF11YDR228C NNF1P47149 201 aa3□□□□□ -1.93
PCF11YDR228C SMX3P54999 86 aaPredicted RBP3□□□□□ -1.93
PCF11YDR228C SSL2Q00578 843 aa3□□□□□ -1.93
PCF11YDR228C UBS1P38290 277 aa2.99□□□□□ -1.93
PCF11YDR228C TDP1P38319 544 aa2.99□□□□□ -1.93
PCF11YDR228C CDC53Q12018 815 aaKnown RBP2.99□□□□□ -1.93
PCF11YDR228C TAF3Q12297 353 aa2.99□□□□□ -1.93
PCF11YDR228C GFA1P14742 717 aaKnown RBP2.99□□□□□ -1.93
Retrieved 100 of 5,963 RNA–protein pairs in 27.7 ms