RNA–Protein interactions for RNA: ENST00000576019.5

VPS53-219, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 3

Gene VPS53, Length 613 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-219ENST00000576019 NPPAP01160 153 aa5.07□□□□□ -1.6
VPS53-219ENST00000576019 ZNF853P0CG23 659 aa5.07□□□□□ -1.6
VPS53-219ENST00000576019 IGHV4-31P0DP07 118 aa5.07□□□□□ -1.6
VPS53-219ENST00000576019 HLA-DOBP13765 273 aa5.07□□□□□ -1.6
VPS53-219ENST00000576019 CTNNA2P26232 953 aa5.07□□□□□ -1.6
VPS53-219ENST00000576019 LAP3P28838 519 aa5.07□□□□□ -1.6
VPS53-219ENST00000576019 NUP62P37198 522 aaPredicted RBP5.07□□□□□ -1.6
VPS53-219ENST00000576019 FDFT1P37268 417 aa5.07□□□□□ -1.6
VPS53-219ENST00000576019 USP8P40818 1118 aa5.07□□□□□ -1.6
VPS53-219ENST00000576019 MATKP42679 507 aa5.07□□□□□ -1.6
VPS53-219ENST00000576019 MAGEA8P43361 318 aa5.07□□□□□ -1.6
VPS53-219ENST00000576019 GLUD2P49448 558 aa5.07□□□□□ -1.6
VPS53-219ENST00000576019 CCR4P51679 360 aa5.07□□□□□ -1.6
VPS53-219ENST00000576019 GAS1P54826 345 aa5.07□□□□□ -1.6
VPS53-219ENST00000576019 HADHBP55084 474 aaKnown RBP5.07□□□□□ -1.6
VPS53-219ENST00000576019 PROK1P58294 105 aa5.07□□□□□ -1.6
VPS53-219ENST00000576019 BTG1P62324 171 aa5.07□□□□□ -1.6
VPS53-219ENST00000576019 RPS4XP62701 263 aaKnown RBP5.07□□□□□ -1.6
VPS53-219ENST00000576019 BNC1Q01954 994 aa5.07□□□□□ -1.6
VPS53-219ENST00000576019 TRAF3Q13114 568 aa5.07□□□□□ -1.6
VPS53-219ENST00000576019 KLF5Q13887 457 aaPredicted RBP5.07□□□□□ -1.6
VPS53-219ENST00000576019 SF3B4Q15427 424 aaKnown RBP eCLIP5.07□□□□□ -1.6
VPS53-219ENST00000576019 STK11Q15831 433 aa5.07□□□□□ -1.6
VPS53-219ENST00000576019 CALCRLQ16602 461 aa5.07□□□□□ -1.6
VPS53-219ENST00000576019 TMEM44Q2T9K0 475 aa5.07□□□□□ -1.6
VPS53-219ENST00000576019 HSP90B2PQ58FF3 399 aa5.07□□□□□ -1.6
VPS53-219ENST00000576019 PPM1LQ5SGD2 360 aa5.07□□□□□ -1.6
VPS53-219ENST00000576019 LIN9Q5TKA1 542 aa5.07□□□□□ -1.6
VPS53-219ENST00000576019 FJX1Q86VR8 437 aa5.07□□□□□ -1.6
VPS53-219ENST00000576019 PARGQ86W56 976 aa5.07□□□□□ -1.6
VPS53-219ENST00000576019 DCP1BQ8IZD4 617 aaKnown RBP5.07□□□□□ -1.6
VPS53-219ENST00000576019 SLC38A6Q8IZM9 456 aa5.07□□□□□ -1.6
VPS53-219ENST00000576019 ARFGAP1Q8N6T3 406 aa5.07□□□□□ -1.6
VPS53-219ENST00000576019 MAB21L3Q8N8X9 362 aa5.07□□□□□ -1.6
VPS53-219ENST00000576019 SPATA4Q8NEY3 305 aa5.07□□□□□ -1.6
VPS53-219ENST00000576019 OR7A2PQ8NGA2 310 aa5.07□□□□□ -1.6
VPS53-219ENST00000576019 OR5AU1Q8NGC0 362 aa5.07□□□□□ -1.6
VPS53-219ENST00000576019 KCNG3Q8TAE7 436 aa5.07□□□□□ -1.6
VPS53-219ENST00000576019 ZG16BQ96DA0 208 aa5.07□□□□□ -1.6
VPS53-219ENST00000576019 C11orf24Q96F05 449 aaPredicted RBP5.07□□□□□ -1.6
VPS53-219ENST00000576019 SCMH1Q96GD3 660 aa5.07□□□□□ -1.6
VPS53-219ENST00000576019 C12orf66Q96MD2 445 aa5.07□□□□□ -1.6
VPS53-219ENST00000576019 BPIFA3Q9BQP9 254 aa5.07□□□□□ -1.6
VPS53-219ENST00000576019 CCM2Q9BSQ5 444 aa5.07□□□□□ -1.6
VPS53-219ENST00000576019 KRTAP3-1Q9BYR8 98 aa5.07□□□□□ -1.6
VPS53-219ENST00000576019 GLT8D2Q9H1C3 349 aa5.07□□□□□ -1.6
VPS53-219ENST00000576019 UBTD1Q9HAC8 227 aa5.07□□□□□ -1.6
VPS53-219ENST00000576019 STAU2Q9NUL3 570 aaKnown RBP eCLIP5.07□□□□□ -1.6
VPS53-219ENST00000576019 ZNF224Q9NZL3 707 aa5.07□□□□□ -1.6
VPS53-219ENST00000576019 PIPOXQ9P0Z9 390 aa5.07□□□□□ -1.6
VPS53-219ENST00000576019 NYAP2Q9P242 653 aa5.07□□□□□ -1.6
VPS53-219ENST00000576019 MGAM2Q2M2H8 2515 aa5.07□□□□□ -1.6
VPS53-219ENST00000576019 MYO5AQ9Y4I1 1855 aaKnown RBP5.07□□□□□ -1.6
VPS53-219ENST00000576019 MAP1AP78559 2803 aaPredicted RBP5.06□□□□□ -1.6
VPS53-219ENST00000576019 MYH4Q9Y623 1939 aa5.06□□□□□ -1.6
VPS53-219ENST00000576019 PPIAL4CA0A0B4J2A2 164 aa5.06□□□□□ -1.6
VPS53-219ENST00000576019 A0A1B0GVL5 298 aa5.06□□□□□ -1.6
VPS53-219ENST00000576019 RPS10-NUDT3A0A1W2PQS6 291 aa5.06□□□□□ -1.6
VPS53-219ENST00000576019 E5RJQ4 531 aa5.06□□□□□ -1.6
VPS53-219ENST00000576019 PRRG2O14669 202 aa5.06□□□□□ -1.6
VPS53-219ENST00000576019 TRDMT1O14717 391 aaKnown RBP5.06□□□□□ -1.6
VPS53-219ENST00000576019 TIMM8AO60220 97 aaPredicted RBP5.06□□□□□ -1.6
VPS53-219ENST00000576019 CIAO1O76071 339 aa5.06□□□□□ -1.6
VPS53-219ENST00000576019 STK17BO94768 372 aa5.06□□□□□ -1.6
VPS53-219ENST00000576019 LATS1O95835 1130 aa5.06□□□□□ -1.6
VPS53-219ENST00000576019 PPIAL4GP0DN37 164 aa5.06□□□□□ -1.6
VPS53-219ENST00000576019 FCGR1AP12314 374 aa5.06□□□□□ -1.6
VPS53-219ENST00000576019 ZNF20P17024 532 aa5.06□□□□□ -1.6
VPS53-219ENST00000576019 CD9P21926 228 aa5.06□□□□□ -1.6
VPS53-219ENST00000576019 GLRA1P23415 457 aa5.06□□□□□ -1.6
VPS53-219ENST00000576019 PSMA2P25787 234 aa5.06□□□□□ -1.6
VPS53-219ENST00000576019 BMI1P35226 326 aa5.06□□□□□ -1.6
VPS53-219ENST00000576019 TPMTP51580 245 aa5.06□□□□□ -1.6
VPS53-219ENST00000576019 HERVK_113P63132 956 aa5.06□□□□□ -1.6
VPS53-219ENST00000576019 ERVK-8P63133 956 aa5.06□□□□□ -1.6
VPS53-219ENST00000576019 ABATP80404 500 aa5.06□□□□□ -1.6
VPS53-219ENST00000576019 LIPEQ05469 1076 aa5.06□□□□□ -1.6
VPS53-219ENST00000576019 LGALS3BPQ08380 585 aa5.06□□□□□ -1.6
VPS53-219ENST00000576019 MFGE8Q08431 387 aaPredicted RBP5.06□□□□□ -1.6
VPS53-219ENST00000576019 DAZAP2Q15038 168 aaPredicted RBP5.06□□□□□ -1.6
VPS53-219ENST00000576019 EXT1Q16394 746 aa5.06□□□□□ -1.6
VPS53-219ENST00000576019 CDKN3Q16667 212 aa5.06□□□□□ -1.6
VPS53-219ENST00000576019 PARP6Q2NL67 630 aa5.06□□□□□ -1.6
VPS53-219ENST00000576019 ZNF699Q32M78 642 aa5.06□□□□□ -1.6
VPS53-219ENST00000576019 Q4G0T1 1027 aa5.06□□□□□ -1.6
VPS53-219ENST00000576019 ACSF3Q4G176 576 aaPredicted RBP5.06□□□□□ -1.6
VPS53-219ENST00000576019 CTSL3PQ5NE16 218 aa5.06□□□□□ -1.6
VPS53-219ENST00000576019 MANEAQ5SRI9 462 aa5.06□□□□□ -1.6
VPS53-219ENST00000576019 DCAF12Q5T6F0 453 aa5.06□□□□□ -1.6
VPS53-219ENST00000576019 PIP5KL1Q5T9C9 394 aa5.06□□□□□ -1.6
VPS53-219ENST00000576019 IGFL4Q6B9Z1 124 aa5.06□□□□□ -1.6
VPS53-219ENST00000576019 RHBDF2Q6PJF5 856 aa5.06□□□□□ -1.6
VPS53-219ENST00000576019 ASRGL1Q7L266 308 aa5.06□□□□□ -1.6
VPS53-219ENST00000576019 GPR65Q8IYL9 337 aa5.06□□□□□ -1.6
VPS53-219ENST00000576019 ELMOD1Q8N336 334 aa5.06□□□□□ -1.6
VPS53-219ENST00000576019 TEX26Q8N6G2 289 aa5.06□□□□□ -1.6
VPS53-219ENST00000576019 SYT14Q8NB59 555 aa5.06□□□□□ -1.6
VPS53-219ENST00000576019 OR2T12Q8NG77 320 aa5.06□□□□□ -1.6
VPS53-219ENST00000576019 OR13C3Q8NGS6 347 aa5.06□□□□□ -1.6
VPS53-219ENST00000576019 TCP11Q8WWU5 503 aa5.06□□□□□ -1.6
Retrieved 100 of 20,778 RNA–protein pairs in 97.5 ms