RNA–Protein interactions for RNA: YPL177C

CUP9, Transcript of Homeodomain-containing transcriptional repressor, yeast

Gene CUP9, Length 921 nt, Biotype protein coding.

RNA		Protein				Prediction (catRAPID)		Interaction (RIP-Chip)
Gene	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	Detected Interaction
CUP9	YPL177C	YBR284W	P38150	797 aa		5.07	□□□□□ -1.6
CUP9	YPL177C	RPN4	Q03465	531 aa		5.07	□□□□□ -1.6
CUP9	YPL177C	CDC12	P32468	407 aa	Known RBP	5.06	□□□□□ -1.6
CUP9	YPL177C	SFB2	P53953	876 aa		5.06	□□□□□ -1.6
CUP9	YPL177C	TMN2	Q04562	672 aa		5.06	□□□□□ -1.6
CUP9	YPL177C	UPC2	Q12151	913 aa		5.06	□□□□□ -1.6
CUP9	YPL177C	CIT2	P08679	460 aa		5.05	□□□□□ -1.6
CUP9	YPL177C	YRO2	P38079	344 aa		5.05	□□□□□ -1.6
CUP9	YPL177C	ERT1	P38140	529 aa		5.05	□□□□□ -1.6
CUP9	YPL177C	SUL1	P38359	859 aa		5.05	□□□□□ -1.6
CUP9	YPL177C	BUD6	P41697	788 aa		5.05	□□□□□ -1.6
CUP9	YPL177C	QRI1	P43123	477 aa	Known RBP	5.05	□□□□□ -1.6
CUP9	YPL177C	SRP1	Q02821	542 aa	Known RBP	5.05	□□□□□ -1.6
CUP9	YPL177C	TAF8	Q03750	510 aa		5.05	□□□□□ -1.6
CUP9	YPL177C	YPR071W	Q12346	211 aa		5.05	□□□□□ -1.6
CUP9	YPL177C	HBN1	Q96VH4	193 aa		5.05	□□□□□ -1.6
CUP9	YPL177C	CAN1	P04817	590 aa		5.04	□□□□□ -1.6
CUP9	YPL177C	TOP3	P13099	656 aa		5.04	□□□□□ -1.6
CUP9	YPL177C	STE14	P32584	239 aa		5.04	□□□□□ -1.6
CUP9	YPL177C	KTR4	P38131	464 aa		5.04	□□□□□ -1.6
CUP9	YPL177C	RTA1	P53047	317 aa		5.04	□□□□□ -1.6
CUP9	YPL177C	OMS1	Q06668	471 aa		5.04	□□□□□ -1.6
CUP9	YPL177C	ERR1	P0CX10	437 aa		5.03	□□□□□ -1.6
CUP9	YPL177C	ERR2	P0CX11	437 aa		5.03	□□□□□ -1.6
CUP9	YPL177C	ERG4	P25340	473 aa		5.03	□□□□□ -1.6
CUP9	YPL177C	NPP1	P25353	742 aa		5.03	□□□□□ -1.6
CUP9	YPL177C	RPC82	P32349	654 aa		5.03	□□□□□ -1.6
CUP9	YPL177C	TIM23	P32897	222 aa		5.03	□□□□□ -1.6
CUP9	YPL177C	AFR1	P33304	620 aa		5.03	□□□□□ -1.6
CUP9	YPL177C	BET3	P36149	193 aa		5.03	□□□□□ -1.6
CUP9	YPL177C	HUL4	P40985	892 aa		5.03	□□□□□ -1.6
CUP9	YPL177C	TPO2	P53283	614 aa		5.03	□□□□□ -1.6
CUP9	YPL177C	ADE8	P04161	214 aa		5.02	□□□□□ -1.61
CUP9	YPL177C	TRP4	P07285	380 aa	Predicted RBP	5.02	□□□□□ -1.61
CUP9	YPL177C	GAL11	P19659	1081 aa		5.02	□□□□□ -1.61
CUP9	YPL177C	CAD1	P24813	409 aa	Known RBP	5.02	□□□□□ -1.61
CUP9	YPL177C	ATF1	P40353	525 aa		5.02	□□□□□ -1.61
CUP9	YPL177C	SLU7	Q02775	382 aa	Known RBP	5.02	□□□□□ -1.61
CUP9	YPL177C	FPR4	Q06205	392 aa	Predicted RBP	5.02	□□□□□ -1.61
CUP9	YPL177C	MCH5	Q08777	521 aa		5.02	□□□□□ -1.61
CUP9	YPL177C	MSD1	P15179	658 aa	Known RBP	5.01	□□□□□ -1.61
CUP9	YPL177C	CDC11	P32458	415 aa		5.01	□□□□□ -1.61
CUP9	YPL177C	SIT1	P39980	628 aa		5.01	□□□□□ -1.61
CUP9	YPL177C	NUP82	P40368	713 aa		5.01	□□□□□ -1.61
CUP9	YPL177C	STB4	P50104	949 aa		5.01	□□□□□ -1.61
CUP9	YPL177C	YDL124W	Q07551	312 aa	Known RBP	5.01	□□□□□ -1.61
CUP9	YPL177C	TRM13	Q12383	476 aa		5.01	□□□□□ -1.61
CUP9	YPL177C	TSL1	P38427	1098 aa	Known RBP	5	□□□□□ -1.61
CUP9	YPL177C	GGA2	P38817	585 aa	Known RBP	5	□□□□□ -1.61
CUP9	YPL177C	CHZ1	P40019	153 aa	Predicted RBP	5	□□□□□ -1.61
CUP9	YPL177C	TOK1	P40310	691 aa		5	□□□□□ -1.61
CUP9	YPL177C	STU2	P46675	888 aa		5	□□□□□ -1.61
CUP9	YPL177C	GYP7	P48365	746 aa		5	□□□□□ -1.61
CUP9	YPL177C	RNH70	P53331	553 aa		5	□□□□□ -1.61
CUP9	YPL177C	ERG5	P54781	538 aa		5	□□□□□ -1.61
CUP9	YPL177C	BUL2	Q03758	920 aa	Known RBP	5	□□□□□ -1.61
CUP9	YPL177C	TOM70	P07213	617 aa	Known RBP	4.99	□□□□□ -1.61
CUP9	YPL177C	PET10	P36139	283 aa		4.99	□□□□□ -1.61
CUP9	YPL177C	LCD1	Q04377	747 aa		4.99	□□□□□ -1.61
CUP9	YPL177C	IRC10	Q08118	586 aa		4.99	□□□□□ -1.61
CUP9	YPL177C	SED4	P25365	1065 aa		4.98	□□□□□ -1.61
CUP9	YPL177C	YER158C	P40095	573 aa		4.98	□□□□□ -1.61
CUP9	YPL177C	OSW7	P43611	510 aa		4.98	□□□□□ -1.61
CUP9	YPL177C	RAI1	P53063	387 aa	Known RBP	4.98	□□□□□ -1.61
CUP9	YPL177C	MUK1	Q02866	612 aa		4.98	□□□□□ -1.61
CUP9	YPL177C	YPR196W	Q06595	470 aa		4.98	□□□□□ -1.61
CUP9	YPL177C	ACF2	Q12168	779 aa		4.98	□□□□□ -1.61
CUP9	YPL177C	PPG1	P32838	368 aa		4.97	□□□□□ -1.61
CUP9	YPL177C	UBP6	P43593	499 aa	Known RBP	4.97	□□□□□ -1.61
CUP9	YPL177C	RNT1	Q02555	471 aa		4.97	□□□□□ -1.61
CUP9	YPL177C	YMR206W	Q03695	313 aa		4.97	□□□□□ -1.61
CUP9	YPL177C	PPR1	P07272	904 aa	Predicted RBP	4.96	□□□□□ -1.62
CUP9	YPL177C	PHO8	P11491	566 aa		4.96	□□□□□ -1.62
CUP9	YPL177C	CDC48	P25694	835 aa	Known RBP	4.96	□□□□□ -1.62
CUP9	YPL177C	REC104	P33323	182 aa		4.96	□□□□□ -1.62
CUP9	YPL177C	YKR078W	P36158	585 aa	Known RBP	4.96	□□□□□ -1.62
CUP9	YPL177C	YBR238C	P38330	731 aa	Known RBP	4.96	□□□□□ -1.62
CUP9	YPL177C	YKE2	P52553	114 aa		4.96	□□□□□ -1.62
CUP9	YPL177C	MTH1	P35198	433 aa		4.95	□□□□□ -1.62
CUP9	YPL177C	CCM1	P48237	864 aa	Predicted RBP	4.95	□□□□□ -1.62
CUP9	YPL177C	ALG12	P53730	551 aa		4.95	□□□□□ -1.62
CUP9	YPL177C	ALG7	P07286	448 aa		4.94	□□□□□ -1.62
CUP9	YPL177C	SEC21	P32074	935 aa	Known RBP	4.94	□□□□□ -1.62
CUP9	YPL177C	THI4	P32318	326 aa		4.94	□□□□□ -1.62
CUP9	YPL177C	HSV2	P50079	448 aa	Predicted RBP	4.94	□□□□□ -1.62
CUP9	YPL177C	TIM44	Q01852	431 aa		4.94	□□□□□ -1.62
CUP9	YPL177C	YLR125W	Q12138	136 aa		4.94	□□□□□ -1.62
CUP9	YPL177C	PHR1	P05066	565 aa	Known RBP RIP-Chip data	4.93	□□□□□ -1.62	not detected
CUP9	YPL177C	MET6	P05694	767 aa	Known RBP	4.93	□□□□□ -1.62
CUP9	YPL177C	FBP1	P09201	348 aa		4.93	□□□□□ -1.62
CUP9	YPL177C	GDH3	P39708	457 aa		4.93	□□□□□ -1.62
CUP9	YPL177C	GND2	P53319	492 aa		4.93	□□□□□ -1.62
CUP9	YPL177C	LGE1	Q02796	332 aa	Known RBP	4.93	□□□□□ -1.62
CUP9	YPL177C	ENV7	Q12003	364 aa		4.93	□□□□□ -1.62
CUP9	YPL177C	NOT3	P06102	836 aa	Known RBP	4.92	□□□□□ -1.62
CUP9	YPL177C	CUE2	P36075	443 aa	Known RBP	4.92	□□□□□ -1.62
CUP9	YPL177C	GYP8	P43570	497 aa		4.92	□□□□□ -1.62
CUP9	YPL177C	ALG2	P43636	503 aa		4.92	□□□□□ -1.62
CUP9	YPL177C	MAL11	P53048	616 aa		4.92	□□□□□ -1.62
CUP9	YPL177C	SSL1	Q04673	461 aa	Predicted RBP	4.92	□□□□□ -1.62

Retrieved 100 of 5,963 RNA–protein pairs in 13.3 ms