RNA–Protein interactions for RNA: YHR111W

UBA4, Transcript of E1-like protein that activates Urm1p before urmylation, yeast

Gene UBA4, Length 1,323 nt, Biotype protein coding.

RNA		Protein				Prediction (catRAPID)		Interaction (RIP-Chip)
Gene	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	Detected Interaction
UBA4	YHR111W	RPL22A	P05749	121 aa	Known RBP	11.16	□□□□□ -0.62
UBA4	YHR111W	RSA4	P25382	515 aa	Known RBP	11.16	□□□□□ -0.62
UBA4	YHR111W	SAC6	P32599	642 aa	Known RBP	11.16	□□□□□ -0.62
UBA4	YHR111W	YKT6	P36015	200 aa	Known RBP	11.16	□□□□□ -0.62
UBA4	YHR111W	VPS24	P36095	224 aa	Known RBP	11.16	□□□□□ -0.62
UBA4	YHR111W	MMS4	P38257	691 aa		11.16	□□□□□ -0.62
UBA4	YHR111W	YHR131C	P38835	850 aa		11.16	□□□□□ -0.62
UBA4	YHR111W	HUL4	P40985	892 aa		11.16	□□□□□ -0.62
UBA4	YHR111W	SCD6	P45978	349 aa	Known RBP RIP-Chip data	11.16	□□□□□ -0.62	RIP-Chip
UBA4	YHR111W	CCM1	P48237	864 aa	Predicted RBP	11.16	□□□□□ -0.62
UBA4	YHR111W	VID30	P53076	958 aa		11.16	□□□□□ -0.62
UBA4	YHR111W	SHS1	Q07657	551 aa		11.16	□□□□□ -0.62
UBA4	YHR111W	TCO89	Q08921	799 aa		11.16	□□□□□ -0.62
UBA4	YHR111W	CDC53	Q12018	815 aa	Known RBP	11.16	□□□□□ -0.62
UBA4	YHR111W	SCP160	P06105	1222 aa	Known RBP RIP-Chip data	11.15	□□□□□ -0.62	RIP-Chip
UBA4	YHR111W	YHR202W	P38887	602 aa		11.15	□□□□□ -0.62
UBA4	YHR111W	YER186C	P40101	306 aa		11.15	□□□□□ -0.62
UBA4	YHR111W	FAF1	P40546	346 aa	Predicted RBP	11.15	□□□□□ -0.62
UBA4	YHR111W	YFL052W	P43551	465 aa		11.15	□□□□□ -0.62
UBA4	YHR111W	YPT11	P48559	417 aa		11.15	□□□□□ -0.62
UBA4	YHR111W	YNL034W	P53963	612 aa		11.15	□□□□□ -0.62
UBA4	YHR111W	YNL018C	P53976	612 aa		11.15	□□□□□ -0.62
UBA4	YHR111W	KEX1	P09620	729 aa		11.14	□□□□□ -0.63
UBA4	YHR111W	TRK2	P28584	889 aa		11.14	□□□□□ -0.63
UBA4	YHR111W	MRF1	P30775	413 aa	Predicted RBP	11.14	□□□□□ -0.63
UBA4	YHR111W	RFS1	P38234	210 aa	Known RBP	11.14	□□□□□ -0.63
UBA4	YHR111W	YER130C	P39959	443 aa		11.14	□□□□□ -0.63
UBA4	YHR111W	ASN1	P49089	572 aa	Known RBP	11.14	□□□□□ -0.63
UBA4	YHR111W	ALG11	P53954	548 aa	Known RBP	11.14	□□□□□ -0.63
UBA4	YHR111W	SPO71	Q03868	1245 aa		11.14	□□□□□ -0.63
UBA4	YHR111W	YPL216W	Q08964	1102 aa		11.14	□□□□□ -0.63
UBA4	YHR111W	GPA1	P08539	472 aa		11.13	□□□□□ -0.63
UBA4	YHR111W	SEC21	P32074	935 aa	Known RBP	11.13	□□□□□ -0.63
UBA4	YHR111W	BIO2	P32451	375 aa		11.13	□□□□□ -0.63
UBA4	YHR111W	YKL091C	P33324	310 aa	Known RBP	11.13	□□□□□ -0.63
UBA4	YHR111W	CDC27	P38042	758 aa		11.13	□□□□□ -0.63
UBA4	YHR111W	STB5	P38699	743 aa		11.13	□□□□□ -0.63
UBA4	YHR111W	XDJ1	P39102	459 aa		11.13	□□□□□ -0.63
UBA4	YHR111W	VMS1	Q04311	632 aa	Known RBP	11.13	□□□□□ -0.63
UBA4	YHR111W	UTP14	Q04500	899 aa	Known RBP	11.13	□□□□□ -0.63
UBA4	YHR111W	OSH2	Q12451	1283 aa		11.13	□□□□□ -0.63
UBA4	YHR111W	RPL4A	P10664	362 aa	Known RBP	11.12	□□□□□ -0.63
UBA4	YHR111W	TAF13	P11747	167 aa		11.12	□□□□□ -0.63
UBA4	YHR111W	PRR1	P28708	518 aa		11.12	□□□□□ -0.63
UBA4	YHR111W	HEL1	P36113	551 aa		11.12	□□□□□ -0.63
UBA4	YHR111W	CIR1	P42940	261 aa		11.12	□□□□□ -0.63
UBA4	YHR111W	RPL4B	P49626	362 aa	Known RBP	11.12	□□□□□ -0.63
UBA4	YHR111W	YGR130C	P53278	816 aa		11.12	□□□□□ -0.63
UBA4	YHR111W	SPP1	Q03012	353 aa		11.12	□□□□□ -0.63
UBA4	YHR111W	CWC21	Q03375	135 aa	Known RBP	11.12	□□□□□ -0.63
UBA4	YHR111W	ESC8	Q08119	714 aa		11.12	□□□□□ -0.63
UBA4	YHR111W	DNL4	Q08387	944 aa	Predicted RBP	11.12	□□□□□ -0.63
UBA4	YHR111W	APC11	Q12157	165 aa		11.12	□□□□□ -0.63
UBA4	YHR111W	PUS1	Q12211	544 aa	Known RBP	11.12	□□□□□ -0.63
UBA4	YHR111W	PKH2	Q12236	1081 aa	Known RBP	11.12	□□□□□ -0.63
UBA4	YHR111W	MED1	Q12321	566 aa		11.12	□□□□□ -0.63
UBA4	YHR111W	YLR422W	Q06409	1932 aa		11.12	□□□□□ -0.63
UBA4	YHR111W	VMA1	P17255	1071 aa	Known RBP	11.11	□□□□□ -0.63
UBA4	YHR111W	SYN8	P31377	255 aa		11.11	□□□□□ -0.63
UBA4	YHR111W	MUD1	P32605	298 aa	Known RBP	11.11	□□□□□ -0.63
UBA4	YHR111W	TRM2	P33753	639 aa		11.11	□□□□□ -0.63
UBA4	YHR111W	CCL1	P37366	393 aa		11.11	□□□□□ -0.63
UBA4	YHR111W	LCB2	P40970	561 aa		11.11	□□□□□ -0.63
UBA4	YHR111W	ULI1	P43604	169 aa		11.11	□□□□□ -0.63
UBA4	YHR111W	TOS3	P43637	560 aa		11.11	□□□□□ -0.63
UBA4	YHR111W	HSH155	P49955	971 aa	Known RBP	11.11	□□□□□ -0.63
UBA4	YHR111W	NPP2	P39997	493 aa		11.1	□□□□□ -0.63
UBA4	YHR111W	RAD54	P32863	898 aa		11.09	□□□□□ -0.63
UBA4	YHR111W	OYE3	P41816	400 aa	Predicted RBP	11.09	□□□□□ -0.63
UBA4	YHR111W	HAP5	Q02516	242 aa		11.09	□□□□□ -0.63
UBA4	YHR111W	EEB1	Q02891	456 aa		11.09	□□□□□ -0.63
UBA4	YHR111W	RCR2	Q03446	210 aa	Known RBP	11.09	□□□□□ -0.63
UBA4	YHR111W	ETT1	Q08421	412 aa	Known RBP	11.09	□□□□□ -0.63
UBA4	YHR111W	SSB1	P11484	613 aa	Known RBP	11.09	□□□□□ -0.63
UBA4	YHR111W	OM45	P16547	393 aa		11.09	□□□□□ -0.63
UBA4	YHR111W	GCS1	P35197	352 aa		11.09	□□□□□ -0.63
UBA4	YHR111W	MNR2	P35724	969 aa		11.09	□□□□□ -0.63
UBA4	YHR111W	APM2	P38700	605 aa		11.09	□□□□□ -0.63
UBA4	YHR111W	SSB2	P40150	613 aa	Known RBP	11.09	□□□□□ -0.63
UBA4	YHR111W	MMF1	P40185	145 aa	Known RBP	11.09	□□□□□ -0.63
UBA4	YHR111W	DJP1	P40564	432 aa		11.09	□□□□□ -0.63
UBA4	YHR111W	STB4	P50104	949 aa		11.09	□□□□□ -0.63
UBA4	YHR111W	LSC2	P53312	427 aa		11.09	□□□□□ -0.63
UBA4	YHR111W	DON1	Q05610	365 aa		11.09	□□□□□ -0.63
UBA4	YHR111W	SPP382	Q06411	708 aa	Predicted RBP	11.09	□□□□□ -0.63
UBA4	YHR111W	MLH2	Q07980	695 aa		11.09	□□□□□ -0.63
UBA4	YHR111W	YOL075C	Q08234	1294 aa		11.09	□□□□□ -0.63
UBA4	YHR111W	MRN1	Q08925	612 aa	Known RBP RIP-Chip data	11.09	□□□□□ -0.63	not detected
UBA4	YHR111W	AIM44	Q99299	758 aa		11.09	□□□□□ -0.63
UBA4	YHR111W	HAP2	P06774	265 aa		11.08	□□□□□ -0.64
UBA4	YHR111W	CIT2	P08679	460 aa		11.08	□□□□□ -0.64
UBA4	YHR111W	ASP3-2	P0CX77	362 aa		11.08	□□□□□ -0.64
UBA4	YHR111W	ASP3-3	P0CX78	362 aa		11.08	□□□□□ -0.64
UBA4	YHR111W	ASP3-4	P0CX79	362 aa		11.08	□□□□□ -0.64
UBA4	YHR111W	ASP3-1	P0CZ17	362 aa		11.08	□□□□□ -0.64
UBA4	YHR111W	MAK16	P10962	306 aa	Predicted RBP	11.08	□□□□□ -0.64
UBA4	YHR111W	CYS3	P31373	394 aa	Known RBP	11.08	□□□□□ -0.64
UBA4	YHR111W	PIN4	P34217	668 aa	Known RBP RIP-Chip data	11.08	□□□□□ -0.64	not detected
UBA4	YHR111W	YEL023C	P39992	682 aa		11.08	□□□□□ -0.64
UBA4	YHR111W	TIM8	P57744	87 aa		11.08	□□□□□ -0.64

Retrieved 100 of 5,963 RNA–protein pairs in 19.3 ms