RNA–Protein interactions for RNA: ENST00000560402.1

SMAD3-214, Transcript of SMAD family member 3, humanhuman

TSL 4

Gene SMAD3, Length 590 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMAD3-214ENST00000560402 HOXA10P31260 410 aaPredicted RBP17.76■□□□□ 0.43
SMAD3-214ENST00000560402 IARSP41252 1262 aaKnown RBP17.76■□□□□ 0.43
SMAD3-214ENST00000560402 ZNF34Q8IZ26 560 aa17.76■□□□□ 0.43
SMAD3-214ENST00000560402 ZNF277Q9NRM2 450 aaPredicted RBP17.76■□□□□ 0.43
SMAD3-214ENST00000560402 LAMB2P55268 1798 aa17.76■□□□□ 0.43
SMAD3-214ENST00000560402 LRP10Q7Z4F1 713 aa17.75■□□□□ 0.43
SMAD3-214ENST00000560402 LDHDQ86WU2 507 aa17.75■□□□□ 0.43
SMAD3-214ENST00000560402 ZNF541Q9H0D2 1346 aa17.74■□□□□ 0.43
SMAD3-214ENST00000560402 HSP90AB3PQ58FF7 597 aa17.74■□□□□ 0.43
SMAD3-214ENST00000560402 SUSD4Q5VX71 490 aa17.74■□□□□ 0.43
SMAD3-214ENST00000560402 RBM17Q96I25 401 aaKnown RBP17.74■□□□□ 0.43
SMAD3-214ENST00000560402 CRAMP1Q96RY5 1269 aa17.74■□□□□ 0.43
SMAD3-214ENST00000560402 CREBZFQ9NS37 354 aa17.74■□□□□ 0.43
SMAD3-214ENST00000560402 FZD9O00144 591 aa17.73■□□□□ 0.43
SMAD3-214ENST00000560402 PDIA6Q15084 440 aa17.73■□□□□ 0.43
SMAD3-214ENST00000560402 OLFM4Q6UX06 510 aa17.73■□□□□ 0.43
SMAD3-214ENST00000560402 SYNE4Q8N205 404 aa17.73■□□□□ 0.43
SMAD3-214ENST00000560402 JDP2Q8WYK2 163 aa17.73■□□□□ 0.43
SMAD3-214ENST00000560402 TAF1DQ9H5J8 278 aaPredicted RBP17.73■□□□□ 0.43
SMAD3-214ENST00000560402 HACL1Q9UJ83 578 aa17.73■□□□□ 0.43
SMAD3-214ENST00000560402 ANP32CO43423 234 aa17.72■□□□□ 0.43
SMAD3-214ENST00000560402 EIF2S2P20042 333 aaKnown RBP17.72■□□□□ 0.43
SMAD3-214ENST00000560402 WDR43Q15061 677 aaKnown RBP eCLIP17.72■□□□□ 0.43
SMAD3-214ENST00000560402 GPC2Q8N158 579 aa17.72■□□□□ 0.43
SMAD3-214ENST00000560402 PPEF1O14829 653 aaPredicted RBP17.71■□□□□ 0.43
SMAD3-214ENST00000560402 RUNDC1Q96C34 613 aa17.71■□□□□ 0.43
SMAD3-214ENST00000560402 NLRP3Q96P20 1036 aa17.71■□□□□ 0.43
SMAD3-214ENST00000560402 PCNTO95613 3336 aa17.71■□□□□ 0.43
SMAD3-214ENST00000560402 HOXB7P09629 217 aa17.7■□□□□ 0.42
SMAD3-214ENST00000560402 POTEIP0CG38 1075 aa17.7■□□□□ 0.42
SMAD3-214ENST00000560402 POTEJP0CG39 1038 aa17.7■□□□□ 0.42
SMAD3-214ENST00000560402 PNMA8AQ86V59 439 aaPredicted RBP17.7■□□□□ 0.42
SMAD3-214ENST00000560402 UTP14AQ9BVJ6 771 aaKnown RBP17.7■□□□□ 0.42
SMAD3-214ENST00000560402 TMX4Q9H1E5 349 aaPredicted RBP17.7■□□□□ 0.42
SMAD3-214ENST00000560402 COL4A5P29400 1685 aa17.7■□□□□ 0.42
SMAD3-214ENST00000560402 PASKQ96RG2 1323 aa17.7■□□□□ 0.42
SMAD3-214ENST00000560402 EPHX2P34913 555 aa17.69■□□□□ 0.42
SMAD3-214ENST00000560402 EIF6P56537 245 aaKnown RBP17.69■□□□□ 0.42
SMAD3-214ENST00000560402 DDX21Q9NR30 783 aaKnown RBP eCLIP17.69■□□□□ 0.42
SMAD3-214ENST00000560402 LRRC37AA6NMS7 1700 aa17.69■□□□□ 0.42
SMAD3-214ENST00000560402 CHL1O00533 1208 aa17.68■□□□□ 0.42
SMAD3-214ENST00000560402 PROSER3Q2NL68 480 aa17.68■□□□□ 0.42
SMAD3-214ENST00000560402 SLC10A5Q5PT55 438 aa17.68■□□□□ 0.42
SMAD3-214ENST00000560402 DDX60Q8IY21 1712 aaKnown RBP17.68■□□□□ 0.42
SMAD3-214ENST00000560402 VPS33BQ9H267 617 aa17.68■□□□□ 0.42
SMAD3-214ENST00000560402 EAPPQ56P03 285 aaPredicted RBP17.67■□□□□ 0.42
SMAD3-214ENST00000560402 COPS6Q7L5N1 327 aa17.67■□□□□ 0.42
SMAD3-214ENST00000560402 CCDC146Q8IYE0 955 aa17.67■□□□□ 0.42
SMAD3-214ENST00000560402 LARGE2Q8N3Y3 721 aa17.67■□□□□ 0.42
SMAD3-214ENST00000560402 LTBP1Q14766 1721 aa17.67■□□□□ 0.42
SMAD3-214ENST00000560402 CNTNAP1P78357 1384 aa17.66■□□□□ 0.42
SMAD3-214ENST00000560402 ANXA1P04083 346 aa17.66■□□□□ 0.42
SMAD3-214ENST00000560402 HSPA1AP0DMV8 641 aaKnown RBP17.66■□□□□ 0.42
SMAD3-214ENST00000560402 HSPA1BP0DMV9 641 aaKnown RBP17.66■□□□□ 0.42
SMAD3-214ENST00000560402 NEUROD2Q15784 382 aa17.66■□□□□ 0.42
SMAD3-214ENST00000560402 NLRP10Q86W26 655 aa17.66■□□□□ 0.42
SMAD3-214ENST00000560402 XAGE3Q8WTP9 111 aa17.66■□□□□ 0.42
SMAD3-214ENST00000560402 TRIM35Q9UPQ4 493 aa17.66■□□□□ 0.42
SMAD3-214ENST00000560402 ATP6V0A2Q9Y487 856 aa17.66■□□□□ 0.42
SMAD3-214ENST00000560402 ABCC4O15439 1325 aa17.66■□□□□ 0.42
SMAD3-214ENST00000560402 LMOD1P29536 600 aaPredicted RBP17.65■□□□□ 0.42
SMAD3-214ENST00000560402 TCIRG1Q13488 830 aa17.65■□□□□ 0.42
SMAD3-214ENST00000560402 HDGFL1Q5TGJ6 251 aa17.65■□□□□ 0.42
SMAD3-214ENST00000560402 C3orf67Q6ZVT6 689 aa17.65■□□□□ 0.42
SMAD3-214ENST00000560402 NIM1KQ8IY84 436 aa17.65■□□□□ 0.42
SMAD3-214ENST00000560402 SUPT20HQ8NEM7 779 aa17.65■□□□□ 0.42
SMAD3-214ENST00000560402 SH3TC1Q8TE82 1336 aa17.65■□□□□ 0.42
SMAD3-214ENST00000560402 TMEM88BA6NKF7 163 aa17.64■□□□□ 0.41
SMAD3-214ENST00000560402 AIMP1Q12904 312 aaKnown RBP17.64■□□□□ 0.41
SMAD3-214ENST00000560402 NECTIN2Q92692 538 aa17.64■□□□□ 0.41
SMAD3-214ENST00000560402 CLEC11AQ9Y240 323 aa17.64■□□□□ 0.41
SMAD3-214ENST00000560402 TRPM7Q96QT4 1865 aa17.64■□□□□ 0.41
SMAD3-214ENST00000560402 PPIP5K2O43314 1243 aa17.63■□□□□ 0.41
SMAD3-214ENST00000560402 ITGBL1O95965 494 aaPredicted RBP17.63■□□□□ 0.41
SMAD3-214ENST00000560402 TMC4Q7Z404 712 aa17.63■□□□□ 0.41
SMAD3-214ENST00000560402 CFAP44Q96MT7 982 aa17.63■□□□□ 0.41
SMAD3-214ENST00000560402 RTFDC1Q9BY42 306 aaPredicted RBP17.63■□□□□ 0.41
SMAD3-214ENST00000560402 CHPF2Q9P2E5 772 aa17.63■□□□□ 0.41
SMAD3-214ENST00000560402 DBF4Q9UBU7 674 aaPredicted RBP17.63■□□□□ 0.41
SMAD3-214ENST00000560402 MKRN1Q9UHC7 482 aaKnown RBP17.63■□□□□ 0.41
SMAD3-214ENST00000560402 LAS1LQ9Y4W2 734 aaKnown RBP17.63■□□□□ 0.41
SMAD3-214ENST00000560402 CCER2I3L3R5 266 aa17.62■□□□□ 0.41
SMAD3-214ENST00000560402 BBOX1O75936 387 aa17.62■□□□□ 0.41
SMAD3-214ENST00000560402 COL13A1Q5TAT6 717 aaPredicted RBP17.62■□□□□ 0.41
SMAD3-214ENST00000560402 DDX46Q7L014 1031 aaKnown RBP17.62■□□□□ 0.41
SMAD3-214ENST00000560402 PLBD2Q8NHP8 589 aa17.62■□□□□ 0.41
SMAD3-214ENST00000560402 PRKRIP1Q9H875 184 aaPredicted RBP17.62■□□□□ 0.41
SMAD3-214ENST00000560402 TRMT112Q9UI30 125 aaKnown RBP17.62■□□□□ 0.41
SMAD3-214ENST00000560402 ADAMTS8Q9UP79 889 aa17.62■□□□□ 0.41
SMAD3-214ENST00000560402 GJA3Q9Y6H8 435 aa17.62■□□□□ 0.41
SMAD3-214ENST00000560402 CALD1Q05682 793 aaKnown RBP17.61■□□□□ 0.41
SMAD3-214ENST00000560402 GRAPQ13588 217 aa17.61■□□□□ 0.41
SMAD3-214ENST00000560402 KRT24Q2M2I5 525 aa17.61■□□□□ 0.41
SMAD3-214ENST00000560402 SP8Q8IXZ3 490 aa17.61■□□□□ 0.41
SMAD3-214ENST00000560402 GRAPLQ8TC17 118 aaPredicted RBP17.61■□□□□ 0.41
SMAD3-214ENST00000560402 HYPKQ9NX55 129 aa17.61■□□□□ 0.41
SMAD3-214ENST00000560402 CDHR2Q9BYE9 1310 aa17.61■□□□□ 0.41
SMAD3-214ENST00000560402 DUOX1Q9NRD9 1551 aa17.61■□□□□ 0.41
SMAD3-214ENST00000560402 TCERG1O14776 1098 aaKnown RBP17.6■□□□□ 0.41
SMAD3-214ENST00000560402 SCNN1DP51172 638 aa17.6■□□□□ 0.41
Retrieved 100 of 20,778 RNA–protein pairs in 26 ms