RNA–Protein interactions for RNA: ENST00000462482.1

SKA3-204, Transcript of spindle and kinetochore associated complex subunit 3, humanhuman

TSL 2

Gene SKA3, Length 750 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SKA3-204ENST00000462482 CRAMP1Q96RY5 1269 aa20.15■□□□□ 0.82
SKA3-204ENST00000462482 UTP14AQ9BVJ6 771 aaKnown RBP20.15■□□□□ 0.82
SKA3-204ENST00000462482 UBN2Q6ZU65 1347 aa20.15■□□□□ 0.82
SKA3-204ENST00000462482 RIC1Q4ADV7 1423 aa20.15■□□□□ 0.82
SKA3-204ENST00000462482 FZD9O00144 591 aa20.14■□□□□ 0.81
SKA3-204ENST00000462482 PPEF1O14829 653 aaPredicted RBP20.14■□□□□ 0.81
SKA3-204ENST00000462482 HSPA1AP0DMV8 641 aaKnown RBP20.14■□□□□ 0.81
SKA3-204ENST00000462482 HSPA1BP0DMV9 641 aaKnown RBP20.14■□□□□ 0.81
SKA3-204ENST00000462482 EPHX2P34913 555 aa20.14■□□□□ 0.81
SKA3-204ENST00000462482 WDR43Q15061 677 aaKnown RBP eCLIP20.14■□□□□ 0.81
SKA3-204ENST00000462482 HSP90AB3PQ58FF7 597 aa20.14■□□□□ 0.81
SKA3-204ENST00000462482 GPC2Q8N158 579 aa20.14■□□□□ 0.81
SKA3-204ENST00000462482 LAMB4A4D0S4 1761 aa20.13■□□□□ 0.81
SKA3-204ENST00000462482 TCERG1O14776 1098 aaKnown RBP20.13■□□□□ 0.81
SKA3-204ENST00000462482 NTSR2O95665 410 aa20.13■□□□□ 0.81
SKA3-204ENST00000462482 LMOD1P29536 600 aaPredicted RBP20.13■□□□□ 0.81
SKA3-204ENST00000462482 COL13A1Q5TAT6 717 aaPredicted RBP20.13■□□□□ 0.81
SKA3-204ENST00000462482 LARGE2Q8N3Y3 721 aa20.13■□□□□ 0.81
SKA3-204ENST00000462482 MKRN1Q9UHC7 482 aaKnown RBP20.13■□□□□ 0.81
SKA3-204ENST00000462482 MYBBP1AQ9BQG0 1328 aaKnown RBP20.12■□□□□ 0.81
SKA3-204ENST00000462482 NEUROD2Q15784 382 aa20.12■□□□□ 0.81
SKA3-204ENST00000462482 TNS4Q8IZW8 715 aa20.12■□□□□ 0.81
SKA3-204ENST00000462482 GJA3Q9Y6H8 435 aa20.12■□□□□ 0.81
SKA3-204ENST00000462482 KDM3BQ7LBC6 1761 aa20.11■□□□□ 0.81
SKA3-204ENST00000462482 ARFGEF2Q9Y6D5 1785 aa20.11■□□□□ 0.81
SKA3-204ENST00000462482 RNF123Q5XPI4 1314 aa20.11■□□□□ 0.81
SKA3-204ENST00000462482 DDX10Q13206 875 aaKnown RBP20.11■□□□□ 0.81
SKA3-204ENST00000462482 CCDC88AQ3V6T2 1871 aa20.1■□□□□ 0.81
SKA3-204ENST00000462482 TMEM88BA6NKF7 163 aa20.1■□□□□ 0.81
SKA3-204ENST00000462482 AIMP1Q12904 312 aaKnown RBP20.1■□□□□ 0.81
SKA3-204ENST00000462482 NIM1KQ8IY84 436 aa20.1■□□□□ 0.81
SKA3-204ENST00000462482 NECTIN2Q92692 538 aa20.1■□□□□ 0.81
SKA3-204ENST00000462482 LAS1LQ9Y4W2 734 aaKnown RBP20.1■□□□□ 0.81
SKA3-204ENST00000462482 ANXA1P04083 346 aa20.09■□□□□ 0.81
SKA3-204ENST00000462482 PDIA6Q15084 440 aa20.09■□□□□ 0.81
SKA3-204ENST00000462482 COPS6Q7L5N1 327 aa20.09■□□□□ 0.81
SKA3-204ENST00000462482 CCDC146Q8IYE0 955 aa20.09■□□□□ 0.81
SKA3-204ENST00000462482 XAGE3Q8WTP9 111 aa20.09■□□□□ 0.81
SKA3-204ENST00000462482 RUNDC1Q96C34 613 aa20.09■□□□□ 0.81
SKA3-204ENST00000462482 DICER1Q9UPY3 1922 aaKnown RBP20.09■□□□□ 0.81
SKA3-204ENST00000462482 PASKQ96RG2 1323 aa20.08■□□□□ 0.81
SKA3-204ENST00000462482 PROSER3Q2NL68 480 aa20.08■□□□□ 0.81
SKA3-204ENST00000462482 SLC10A5Q5PT55 438 aa20.08■□□□□ 0.81
SKA3-204ENST00000462482 SUPT20HQ8NEM7 779 aa20.08■□□□□ 0.81
SKA3-204ENST00000462482 PPIP5K2O43314 1243 aa20.07■□□□□ 0.8
SKA3-204ENST00000462482 LRP10Q7Z4F1 713 aa20.07■□□□□ 0.8
SKA3-204ENST00000462482 CNTROBQ8N137 903 aa20.07■□□□□ 0.8
SKA3-204ENST00000462482 VPS33BQ9H267 617 aa20.07■□□□□ 0.8
SKA3-204ENST00000462482 DDX21Q9NR30 783 aaKnown RBP eCLIP20.07■□□□□ 0.8
SKA3-204ENST00000462482 TRMT112Q9UI30 125 aaKnown RBP20.07■□□□□ 0.8
SKA3-204ENST00000462482 ATP6V0A2Q9Y487 856 aa20.07■□□□□ 0.8
SKA3-204ENST00000462482 BBOX1O75936 387 aa20.06■□□□□ 0.8
SKA3-204ENST00000462482 ITGBL1O95965 494 aaPredicted RBP20.06■□□□□ 0.8
SKA3-204ENST00000462482 CACNA1SQ13698 1873 aa20.06■□□□□ 0.8
SKA3-204ENST00000462482 MAP1SQ66K74 1059 aaPredicted RBP20.06■□□□□ 0.8
SKA3-204ENST00000462482 C3orf67Q6ZVT6 689 aa20.06■□□□□ 0.8
SKA3-204ENST00000462482 DDX46Q7L014 1031 aaKnown RBP20.06■□□□□ 0.8
SKA3-204ENST00000462482 CNTNAP1P78357 1384 aa20.06■□□□□ 0.8
SKA3-204ENST00000462482 CHL1O00533 1208 aa20.05■□□□□ 0.8
SKA3-204ENST00000462482 TCIRG1Q13488 830 aa20.05■□□□□ 0.8
SKA3-204ENST00000462482 NLRP10Q86W26 655 aa20.05■□□□□ 0.8
SKA3-204ENST00000462482 AIDAQ96BJ3 306 aa20.05■□□□□ 0.8
SKA3-204ENST00000462482 SH3TC1Q8TE82 1336 aa20.04■□□□□ 0.8
SKA3-204ENST00000462482 SNED1Q8TER0 1413 aa20.04■□□□□ 0.8
SKA3-204ENST00000462482 HDGFL1Q5TGJ6 251 aa20.04■□□□□ 0.8
SKA3-204ENST00000462482 DPP8Q6V1X1 898 aaPredicted RBP20.04■□□□□ 0.8
SKA3-204ENST00000462482 DLG5Q8TDM6 1919 aa20.04■□□□□ 0.8
SKA3-204ENST00000462482 ABCC4O15439 1325 aa20.03■□□□□ 0.8
SKA3-204ENST00000462482 CAPN15O75808 1086 aa20.03■□□□□ 0.8
SKA3-204ENST00000462482 HOXB7P09629 217 aa20.03■□□□□ 0.8
SKA3-204ENST00000462482 HCLS1P14317 486 aaPredicted RBP20.03■□□□□ 0.8
SKA3-204ENST00000462482 SCN4AP35499 1836 aa20.03■□□□□ 0.8
SKA3-204ENST00000462482 AOC3Q16853 763 aa20.02■□□□□ 0.8
SKA3-204ENST00000462482 USP50Q70EL3 339 aaPredicted RBP20.02■□□□□ 0.8
SKA3-204ENST00000462482 SP8Q8IXZ3 490 aa20.02■□□□□ 0.8
SKA3-204ENST00000462482 MPNDQ8N594 471 aa20.02■□□□□ 0.8
SKA3-204ENST00000462482 CHPF2Q9P2E5 772 aa20.02■□□□□ 0.8
SKA3-204ENST00000462482 DBF4Q9UBU7 674 aaPredicted RBP20.02■□□□□ 0.8
SKA3-204ENST00000462482 VEGFBP49765 207 aa20.01■□□□□ 0.79
SKA3-204ENST00000462482 TMC4Q7Z404 712 aa20.01■□□□□ 0.79
SKA3-204ENST00000462482 PLBD2Q8NHP8 589 aa20.01■□□□□ 0.79
SKA3-204ENST00000462482 ZNRF3Q9ULT6 936 aa20.01■□□□□ 0.79
SKA3-204ENST00000462482 ABT1Q9ULW3 272 aaKnown RBP20.01■□□□□ 0.79
SKA3-204ENST00000462482 TRIM35Q9UPQ4 493 aa20.01■□□□□ 0.79
SKA3-204ENST00000462482 EPS15P42566 896 aa20■□□□□ 0.79
SKA3-204ENST00000462482 SCNN1DP51172 638 aa20■□□□□ 0.79
SKA3-204ENST00000462482 GRAPQ13588 217 aa20■□□□□ 0.79
SKA3-204ENST00000462482 KRT24Q2M2I5 525 aa20■□□□□ 0.79
SKA3-204ENST00000462482 DEFB115Q30KQ5 88 aa20■□□□□ 0.79
SKA3-204ENST00000462482 ANKRD13DQ6ZTN6 518 aa20■□□□□ 0.79
SKA3-204ENST00000462482 GRAPLQ8TC17 118 aaPredicted RBP20■□□□□ 0.79
SKA3-204ENST00000462482 ADAMTS8Q9UP79 889 aa20■□□□□ 0.79
SKA3-204ENST00000462482 NUP98P52948 1817 aa19.99■□□□□ 0.79
SKA3-204ENST00000462482 CALD1Q05682 793 aaKnown RBP19.99■□□□□ 0.79
SKA3-204ENST00000462482 CFAP44Q96MT7 982 aa19.99■□□□□ 0.79
SKA3-204ENST00000462482 RTFDC1Q9BY42 306 aaPredicted RBP19.99■□□□□ 0.79
SKA3-204ENST00000462482 HYPKQ9NX55 129 aa19.99■□□□□ 0.79
SKA3-204ENST00000462482 TNIP1Q15025 636 aa19.98■□□□□ 0.79
SKA3-204ENST00000462482 BCL2L13Q9BXK5 485 aa19.98■□□□□ 0.79
SKA3-204ENST00000462482 ADARB2Q9NS39 739 aaKnown RBP19.98■□□□□ 0.79
Retrieved 100 of 20,778 RNA–protein pairs in 135.3 ms