RNA–Protein interactions for RNA: ENST00000533222.5

CD44-236, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 2

Gene CD44, Length 581 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-236ENST00000533222 TCTEX1D2Q8WW35 142 aa5.23□□□□□ -1.57
CD44-236ENST00000533222 C1orf54Q8WWF1 131 aa5.23□□□□□ -1.57
CD44-236ENST00000533222 THRSPQ92748 146 aa5.23□□□□□ -1.57
CD44-236ENST00000533222 EDAQ92838 391 aa5.23□□□□□ -1.57
CD44-236ENST00000533222 FKBP10Q96AY3 582 aa5.23□□□□□ -1.57
CD44-236ENST00000533222 OTULINQ96BN8 352 aa5.23□□□□□ -1.57
CD44-236ENST00000533222 CCDC124Q96CT7 223 aaKnown RBP5.23□□□□□ -1.57
CD44-236ENST00000533222 ALG14Q96F25 216 aa5.23□□□□□ -1.57
CD44-236ENST00000533222 WBP1Q96G27 269 aa5.23□□□□□ -1.57
CD44-236ENST00000533222 OXNAD1Q96HP4 312 aaPredicted RBP5.23□□□□□ -1.57
CD44-236ENST00000533222 ZNF514Q96K75 400 aaPredicted RBP5.23□□□□□ -1.57
CD44-236ENST00000533222 SFXN2Q96NB2 322 aa5.23□□□□□ -1.57
CD44-236ENST00000533222 ZNF599Q96NL3 588 aa5.23□□□□□ -1.57
CD44-236ENST00000533222 CHP1Q99653 195 aa5.23□□□□□ -1.57
CD44-236ENST00000533222 CGRRF1Q99675 332 aa5.23□□□□□ -1.57
CD44-236ENST00000533222 ZSWIM1Q9BR11 485 aa5.23□□□□□ -1.57
CD44-236ENST00000533222 LRFN3Q9BTN0 628 aa5.23□□□□□ -1.57
CD44-236ENST00000533222 GGACTQ9BVM4 153 aa5.23□□□□□ -1.57
CD44-236ENST00000533222 ANGPTL4Q9BY76 406 aa5.23□□□□□ -1.57
CD44-236ENST00000533222 EGLN1Q9GZT9 426 aa5.23□□□□□ -1.57
CD44-236ENST00000533222 C11orf54Q9H0W9 315 aaPredicted RBP5.23□□□□□ -1.57
CD44-236ENST00000533222 NMNAT1Q9HAN9 279 aaPredicted RBP5.23□□□□□ -1.57
CD44-236ENST00000533222 SLC28A3Q9HAS3 691 aa5.23□□□□□ -1.57
CD44-236ENST00000533222 SNTG1Q9NSN8 517 aa5.23□□□□□ -1.57
CD44-236ENST00000533222 AKAP7Q9P0M2 348 aaPredicted RBP5.23□□□□□ -1.57
CD44-236ENST00000533222 COL20A1Q9P218 1284 aa5.23□□□□□ -1.57
CD44-236ENST00000533222 TRPC4Q9UBN4 977 aa5.23□□□□□ -1.57
CD44-236ENST00000533222 HEY2Q9UBP5 337 aa5.23□□□□□ -1.57
CD44-236ENST00000533222 PEF1Q9UBV8 284 aaKnown RBP5.23□□□□□ -1.57
CD44-236ENST00000533222 ZNF639Q9UID6 485 aa5.23□□□□□ -1.57
CD44-236ENST00000533222 OR52A1Q9UKL2 312 aa5.23□□□□□ -1.57
CD44-236ENST00000533222 SSR3Q9UNL2 185 aa5.23□□□□□ -1.57
CD44-236ENST00000533222 CA5BQ9Y2D0 317 aa5.23□□□□□ -1.57
CD44-236ENST00000533222 BTBD3Q9Y2F9 522 aa5.23□□□□□ -1.57
CD44-236ENST00000533222 SLC6A5Q9Y345 797 aa5.23□□□□□ -1.57
CD44-236ENST00000533222 CDK5RAP2Q96SN8 1893 aa5.23□□□□□ -1.57
CD44-236ENST00000533222 MYO5BQ9ULV0 1848 aa5.23□□□□□ -1.57
CD44-236ENST00000533222 MYO3AQ8NEV4 1616 aa5.23□□□□□ -1.57
CD44-236ENST00000533222 TOPBP1Q92547 1522 aa5.23□□□□□ -1.57
CD44-236ENST00000533222 EDC4Q6P2E9 1401 aaKnown RBP5.23□□□□□ -1.57
CD44-236ENST00000533222 TMEM238C9JI98 176 aa5.22□□□□□ -1.57
CD44-236ENST00000533222 FAM86B1E9PN63 330 aa5.22□□□□□ -1.57
CD44-236ENST00000533222 H7C417 338 aa5.22□□□□□ -1.57
CD44-236ENST00000533222 K7EP13 123 aa5.22□□□□□ -1.57
CD44-236ENST00000533222 AIPO00170 330 aa5.22□□□□□ -1.57
CD44-236ENST00000533222 PRMT5O14744 637 aaPredicted RBP5.22□□□□□ -1.57
CD44-236ENST00000533222 TRIM24O15164 1050 aa5.22□□□□□ -1.57
CD44-236ENST00000533222 BCAT2O15382 392 aaPredicted RBP5.22□□□□□ -1.57
CD44-236ENST00000533222 SLC16A6O15403 523 aa5.22□□□□□ -1.57
CD44-236ENST00000533222 DLEU1O43261 78 aa5.22□□□□□ -1.57
CD44-236ENST00000533222 LRRTM2O43300 516 aa5.22□□□□□ -1.57
CD44-236ENST00000533222 SUV39H1O43463 412 aa5.22□□□□□ -1.57
CD44-236ENST00000533222 SLC28A2O43868 658 aa5.22□□□□□ -1.57
CD44-236ENST00000533222 GATBO75879 557 aaKnown RBP5.22□□□□□ -1.57
CD44-236ENST00000533222 CNTN5O94779 1100 aa5.22□□□□□ -1.57
CD44-236ENST00000533222 SUPT7LO94864 414 aa5.22□□□□□ -1.57
CD44-236ENST00000533222 PRSS23O95084 383 aa5.22□□□□□ -1.57
CD44-236ENST00000533222 ONECUT2O95948 504 aa5.22□□□□□ -1.57
CD44-236ENST00000533222 IFNA17P01571 189 aa5.22□□□□□ -1.57
CD44-236ENST00000533222 IFNB1P01574 187 aa5.22□□□□□ -1.57
CD44-236ENST00000533222 MMP3P08254 477 aa5.22□□□□□ -1.57
CD44-236ENST00000533222 ARSBP15848 533 aa5.22□□□□□ -1.57
CD44-236ENST00000533222 MUC1P15941 1255 aaPredicted RBP5.22□□□□□ -1.57
CD44-236ENST00000533222 ERCC2P18074 760 aa5.22□□□□□ -1.57
CD44-236ENST00000533222 TYMPP19971 482 aa5.22□□□□□ -1.57
CD44-236ENST00000533222 ANXA7P20073 488 aaKnown RBP5.22□□□□□ -1.57
CD44-236ENST00000533222 HSD11B1P28845 292 aa5.22□□□□□ -1.57
CD44-236ENST00000533222 GJC1P36383 396 aa5.22□□□□□ -1.57
CD44-236ENST00000533222 CSKP41240 450 aa5.22□□□□□ -1.57
CD44-236ENST00000533222 SLC11A1P49279 550 aa5.22□□□□□ -1.57
CD44-236ENST00000533222 PRKXP51817 358 aa5.22□□□□□ -1.57
CD44-236ENST00000533222 NUDT6P53370 316 aa5.22□□□□□ -1.57
CD44-236ENST00000533222 PRKAG1P54619 331 aa5.22□□□□□ -1.57
CD44-236ENST00000533222 RAD23AP54725 363 aa5.22□□□□□ -1.57
CD44-236ENST00000533222 NAGLUP54802 743 aa5.22□□□□□ -1.57
CD44-236ENST00000533222 CASP6P55212 293 aa5.22□□□□□ -1.57
CD44-236ENST00000533222 ATP5IP56385 69 aaPredicted RBP5.22□□□□□ -1.57
CD44-236ENST00000533222 CLDN8P56748 225 aa5.22□□□□□ -1.57
CD44-236ENST00000533222 CDC42P60953 191 aa5.22□□□□□ -1.57
CD44-236ENST00000533222 RAB5BP61020 215 aa5.22□□□□□ -1.57
CD44-236ENST00000533222 RPS8P62241 208 aaKnown RBP5.22□□□□□ -1.57
CD44-236ENST00000533222 RBX1P62877 108 aa5.22□□□□□ -1.57
CD44-236ENST00000533222 DCDP81605 110 aaKnown RBP5.22□□□□□ -1.57
CD44-236ENST00000533222 HTRA4P83105 476 aaPredicted RBP5.22□□□□□ -1.57
CD44-236ENST00000533222 PPARDQ03181 441 aa5.22□□□□□ -1.57
CD44-236ENST00000533222 PTH1RQ03431 593 aa5.22□□□□□ -1.57
CD44-236ENST00000533222 PDIA2Q13087 525 aaKnown RBP5.22□□□□□ -1.57
CD44-236ENST00000533222 CRHR2Q13324 411 aa5.22□□□□□ -1.57
CD44-236ENST00000533222 DNASE1L3Q13609 305 aa5.22□□□□□ -1.57
CD44-236ENST00000533222 SNTB1Q13884 538 aaKnown RBP5.22□□□□□ -1.57
CD44-236ENST00000533222 GTF2H3Q13889 308 aa5.22□□□□□ -1.57
CD44-236ENST00000533222 GRM3Q14832 879 aa5.22□□□□□ -1.57
CD44-236ENST00000533222 ACOX1Q15067 660 aa5.22□□□□□ -1.57
CD44-236ENST00000533222 CNN3Q15417 329 aaKnown RBP5.22□□□□□ -1.57
CD44-236ENST00000533222 RPS6KA1Q15418 735 aa5.22□□□□□ -1.57
CD44-236ENST00000533222 ADIPOQQ15848 244 aa5.22□□□□□ -1.57
CD44-236ENST00000533222 SLC5A12Q1EHB4 618 aa5.22□□□□□ -1.57
CD44-236ENST00000533222 ASTE1Q2TB18 679 aaPredicted RBP5.22□□□□□ -1.57
CD44-236ENST00000533222 AKIRIN2Q53H80 203 aa5.22□□□□□ -1.57
CD44-236ENST00000533222 TCP11X2Q5H9J9 407 aa5.22□□□□□ -1.57
Retrieved 100 of 20,778 RNA–protein pairs in 39.3 ms