RNA–Protein interactions for RNA: YMR171C

EAR1, Transcript of Specificity factor required for Rsp5p-dependent ubiquitination, yeastyeast

Gene EAR1, Length 1,653 nt, Biotype protein coding, Subcellular localisation Cellular bud, Cytoplasm .

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RNA Protein Prediction (catRAPID) Interaction (RIP-Chip)
Gene Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score Detected Interaction
EAR1YMR171C FLC1Q08967 793 aa5.53□□□□□ -1.52
EAR1YMR171C SPO21Q12411 609 aa5.53□□□□□ -1.52
EAR1YMR171C RPS4AP0CX35 261 aaKnown RBP5.52□□□□□ -1.53
EAR1YMR171C RPS4BP0CX36 261 aaKnown RBP5.52□□□□□ -1.53
EAR1YMR171C SNF7P39929 240 aaKnown RBP5.52□□□□□ -1.53
EAR1YMR171C SIP5P40210 489 aaKnown RBP5.52□□□□□ -1.53
EAR1YMR171C YJL045WP47052 634 aa5.52□□□□□ -1.53
EAR1YMR171C YGR125WP53273 1036 aa5.52□□□□□ -1.53
EAR1YMR171C RNH70P53331 553 aa5.52□□□□□ -1.53
EAR1YMR171C GIC2Q06648 383 aa5.52□□□□□ -1.53
EAR1YMR171C HRK1Q08732 759 aaKnown RBP5.52□□□□□ -1.53
EAR1YMR171C OSH2Q12451 1283 aa5.52□□□□□ -1.53
EAR1YMR171C YML133CQ03099 1374 aa5.51□□□□□ -1.53
EAR1YMR171C YLL067CQ07888 1374 aa5.51□□□□□ -1.53
EAR1YMR171C YLL066CQ99208 1374 aa5.51□□□□□ -1.53
EAR1YMR171C NAM7P30771 971 aaKnown RBP5.51□□□□□ -1.53
EAR1YMR171C CAB3P36076 571 aa5.51□□□□□ -1.53
EAR1YMR171C EAR1Q03212 550 aa5.51□□□□□ -1.53
EAR1YMR171C TPP1Q03796 238 aa5.51□□□□□ -1.53
EAR1YMR171C PPM2Q08282 695 aa5.51□□□□□ -1.53
EAR1YMR171C PUS7Q08647 676 aaKnown RBP5.51□□□□□ -1.53
EAR1YMR171C YPR053CQ6Q5F3 151 aa5.51□□□□□ -1.53
EAR1YMR171C AKR1P39010 764 aa5.5□□□□□ -1.53
EAR1YMR171C YIR014WP40570 242 aa5.5□□□□□ -1.53
EAR1YMR171C OSW7P43611 510 aa5.5□□□□□ -1.53
EAR1YMR171C SPP382Q06411 708 aaPredicted RBP5.5□□□□□ -1.53
EAR1YMR171C PHM7Q12252 991 aa5.5□□□□□ -1.53
EAR1YMR171C KRE5P22023 1365 aa5.5□□□□□ -1.53
EAR1YMR171C HSP60P19882 572 aaKnown RBP5.5□□□□□ -1.53
EAR1YMR171C RSP5P39940 809 aaKnown RBP5.5□□□□□ -1.53
EAR1YMR171C ERP6P53198 216 aa5.5□□□□□ -1.53
EAR1YMR171C EAF1Q06337 982 aa5.5□□□□□ -1.53
EAR1YMR171C TY1B-NL2Q99337 1749 aaKnown RBP5.49□□□□□ -1.53
EAR1YMR171C CIT1P00890 479 aa5.49□□□□□ -1.53
EAR1YMR171C TAT1P38085 619 aa5.49□□□□□ -1.53
EAR1YMR171C NMD2P38798 1089 aaKnown RBP5.49□□□□□ -1.53
EAR1YMR171C SKN7P38889 622 aa5.49□□□□□ -1.53
EAR1YMR171C PNT1P38969 423 aa5.49□□□□□ -1.53
EAR1YMR171C UTP8P53276 713 aaKnown RBP5.49□□□□□ -1.53
EAR1YMR171C PSK1P31374 1356 aa5.48□□□□□ -1.53
EAR1YMR171C RPL11AP0C0W9 174 aaKnown RBP5.48□□□□□ -1.53
EAR1YMR171C PRP9P19736 530 aaKnown RBP5.48□□□□□ -1.53
EAR1YMR171C DBP2P24783 546 aaKnown RBP5.48□□□□□ -1.53
EAR1YMR171C ARE1P25628 610 aa5.48□□□□□ -1.53
EAR1YMR171C MXR1P40029 184 aa5.48□□□□□ -1.53
EAR1YMR171C ALR2P43553 858 aa5.48□□□□□ -1.53
EAR1YMR171C UBX5Q06682 500 aa5.48□□□□□ -1.53
EAR1YMR171C RPL11BQ3E757 174 aaPredicted RBP5.48□□□□□ -1.53
EAR1YMR171C YRF1-4O13559 1382 aa5.48□□□□□ -1.53
EAR1YMR171C SIR4P11978 1358 aa5.48□□□□□ -1.53
EAR1YMR171C YSC84P32793 468 aa5.47□□□□□ -1.53
EAR1YMR171C PPG1P32838 368 aa5.47□□□□□ -1.53
EAR1YMR171C TIM23P32897 222 aa5.47□□□□□ -1.53
EAR1YMR171C RPN3P40016 523 aaKnown RBP5.47□□□□□ -1.53
EAR1YMR171C ICP55P40051 511 aa5.47□□□□□ -1.53
EAR1YMR171C MMM1P41800 426 aa5.47□□□□□ -1.53
EAR1YMR171C PAP2P53632 584 aaKnown RBP5.47□□□□□ -1.53
EAR1YMR171C TAP42Q04372 366 aa5.47□□□□□ -1.53
EAR1YMR171C PUF3Q07807 879 aaKnown RBP RIP-Chip data5.47□□□□□ -1.53not detected
EAR1YMR171C MCA1Q08601 432 aa5.47□□□□□ -1.53
EAR1YMR171C WHI3P34761 661 aaKnown RBP5.47□□□□□ -1.53
EAR1YMR171C NUP82P40368 713 aa5.47□□□□□ -1.53
EAR1YMR171C YFL054CP43549 646 aa5.47□□□□□ -1.53
EAR1YMR171C RRP46P53256 223 aaPredicted RBP5.47□□□□□ -1.53
EAR1YMR171C HOS3Q02959 697 aaKnown RBP5.47□□□□□ -1.53
EAR1YMR171C YVC1Q12324 675 aa5.47□□□□□ -1.53
EAR1YMR171C CAN1P04817 590 aa5.46□□□□□ -1.54
EAR1YMR171C DAL5P15365 543 aa5.46□□□□□ -1.54
EAR1YMR171C GAL11P19659 1081 aa5.46□□□□□ -1.54
EAR1YMR171C PRD1P25375 712 aa5.46□□□□□ -1.54
EAR1YMR171C GRX4P32642 244 aa5.46□□□□□ -1.54
EAR1YMR171C PGM1P33401 570 aaKnown RBP5.46□□□□□ -1.54
EAR1YMR171C YIL092WP40497 633 aa5.46□□□□□ -1.54
EAR1YMR171C ALG12P53730 551 aa5.46□□□□□ -1.54
EAR1YMR171C HBS1P32769 611 aaKnown RBP5.45□□□□□ -1.54
EAR1YMR171C MNN4P36044 1178 aa5.45□□□□□ -1.54
EAR1YMR171C SAF1P38352 637 aa5.45□□□□□ -1.54
EAR1YMR171C GGA2P38817 585 aaKnown RBP5.45□□□□□ -1.54
EAR1YMR171C CIT3P43635 486 aa5.45□□□□□ -1.54
EAR1YMR171C TNA1P53322 534 aa5.45□□□□□ -1.54
EAR1YMR171C RCL1Q08096 367 aaPredicted RBP5.45□□□□□ -1.54
EAR1YMR171C ERR1P0CX10 437 aa5.44□□□□□ -1.54
EAR1YMR171C ERR2P0CX11 437 aa5.44□□□□□ -1.54
EAR1YMR171C SNF5P18480 905 aa5.44□□□□□ -1.54
EAR1YMR171C RRP14P36080 434 aaKnown RBP5.44□□□□□ -1.54
EAR1YMR171C HUL4P40985 892 aa5.44□□□□□ -1.54
EAR1YMR171C GUS1P46655 708 aaKnown RBP RIP-Chip data5.44□□□□□ -1.54not detected
EAR1YMR171C RCM1P53972 490 aa5.44□□□□□ -1.54
EAR1YMR171C UBP3Q01477 912 aaKnown RBP RIP-Chip data5.44□□□□□ -1.54not detected
EAR1YMR171C YPL034WQ03083 165 aa5.44□□□□□ -1.54
EAR1YMR171C THI22Q06490 572 aa5.44□□□□□ -1.54
EAR1YMR171C YDR306CQ06640 478 aa5.44□□□□□ -1.54
EAR1YMR171C APC1P53886 1748 aa5.44□□□□□ -1.54
EAR1YMR171C PCT1P13259 424 aa5.43□□□□□ -1.54
EAR1YMR171C SAM35P14693 329 aa5.43□□□□□ -1.54
EAR1YMR171C COQ2P32378 372 aa5.43□□□□□ -1.54
EAR1YMR171C SLA2P33338 968 aa5.43□□□□□ -1.54
EAR1YMR171C EBP2P36049 427 aaKnown RBP5.43□□□□□ -1.54
EAR1YMR171C BAP2P38084 609 aa5.43□□□□□ -1.54
EAR1YMR171C BRN1P38170 754 aa5.43□□□□□ -1.54
Retrieved 100 of 5,963 RNA–protein pairs in 15.9 ms