RNA–Protein interactions for RNA: YGR072W

UPF3, Transcript of Component of the nonsense-mediated mRNA decay (NMD) pathway, yeastyeast

Gene UPF3, Length 1,164 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (RIP-Chip)
Gene Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score Detected Interaction
UPF3YGR072W CUE2P36075 443 aaKnown RBP4.71□□□□□ -1.66
UPF3YGR072W STU2P46675 888 aa4.71□□□□□ -1.66
UPF3YGR072W BUL1P48524 976 aa4.71□□□□□ -1.66
UPF3YGR072W NAB6Q03735 1134 aaKnown RBP RIP-Chip data4.71□□□□□ -1.66not detected
UPF3YGR072W SRP101P32916 621 aa4.7□□□□□ -1.66
UPF3YGR072W SUL1P38359 859 aa4.7□□□□□ -1.66
UPF3YGR072W MAD1P40957 749 aa4.7□□□□□ -1.66
UPF3YGR072W STB4P50104 949 aa4.7□□□□□ -1.66
UPF3YGR072W MDM38Q08179 573 aa4.7□□□□□ -1.66
UPF3YGR072W ENB1Q08299 606 aa4.7□□□□□ -1.66
UPF3YGR072W MCH5Q08777 521 aa4.7□□□□□ -1.66
UPF3YGR072W YLL058WQ12198 575 aa4.7□□□□□ -1.66
UPF3YGR072W NPC2Q12408 173 aa4.7□□□□□ -1.66
UPF3YGR072W RKM4Q12504 494 aa4.7□□□□□ -1.66
UPF3YGR072W YKL151CP36059 337 aa4.69□□□□□ -1.66
UPF3YGR072W CCC2P38995 1004 aa4.69□□□□□ -1.66
UPF3YGR072W YGL176CP46945 554 aa4.69□□□□□ -1.66
UPF3YGR072W TYW3P53177 273 aa4.69□□□□□ -1.66
UPF3YGR072W EEB1Q02891 456 aa4.69□□□□□ -1.66
UPF3YGR072W HRQ1Q05549 1077 aa4.69□□□□□ -1.66
UPF3YGR072W YKL107WP34251 309 aa4.68□□□□□ -1.66
UPF3YGR072W ECM21P38167 1117 aaKnown RBP4.68□□□□□ -1.66
UPF3YGR072W PSP2P50109 593 aaKnown RBP4.68□□□□□ -1.66
UPF3YGR072W SRT1Q03175 343 aa4.68□□□□□ -1.66
UPF3YGR072W YTA7P40340 1379 aa4.67□□□□□ -1.66
UPF3YGR072W HSF1P10961 833 aa4.67□□□□□ -1.66
UPF3YGR072W GIC1P38785 314 aa4.67□□□□□ -1.66
UPF3YGR072W URM1P40554 99 aaPredicted RBP4.67□□□□□ -1.66
UPF3YGR072W NCS6P53088 359 aa4.67□□□□□ -1.66
UPF3YGR072W YMR206WQ03695 313 aa4.67□□□□□ -1.66
UPF3YGR072W IRC10Q08118 586 aa4.67□□□□□ -1.66
UPF3YGR072W CDC34P14682 295 aa4.66□□□□□ -1.66
UPF3YGR072W KAR4P25583 335 aa4.66□□□□□ -1.66
UPF3YGR072W FUN30P31380 1131 aa4.66□□□□□ -1.66
UPF3YGR072W MNR2P35724 969 aa4.66□□□□□ -1.66
UPF3YGR072W OCA5P38738 679 aa4.66□□□□□ -1.66
UPF3YGR072W FPR4Q06205 392 aaPredicted RBP4.65□□□□□ -1.67
UPF3YGR072W PET112P33893 541 aa4.64□□□□□ -1.67
UPF3YGR072W ATG19P35193 415 aa4.64□□□□□ -1.67
UPF3YGR072W CWC24P53769 259 aa4.64□□□□□ -1.67
UPF3YGR072W OMS1Q06668 471 aa4.64□□□□□ -1.67
UPF3YGR072W WHI4Q07655 649 aaKnown RBP4.64□□□□□ -1.67
UPF3YGR072W PIN2Q12057 282 aa4.64□□□□□ -1.67
UPF3YGR072W ERG4P25340 473 aa4.63□□□□□ -1.67
UPF3YGR072W KTR4P38131 464 aa4.63□□□□□ -1.67
UPF3YGR072W VPS16Q03308 798 aa4.63□□□□□ -1.67
UPF3YGR072W SPO20Q04359 397 aa4.63□□□□□ -1.67
UPF3YGR072W YLR225CQ05948 407 aaKnown RBP4.63□□□□□ -1.67
UPF3YGR072W GUP2Q08929 609 aa4.63□□□□□ -1.67
UPF3YGR072W WRS1Q12109 432 aaKnown RBP4.63□□□□□ -1.67
UPF3YGR072W ACF2Q12168 779 aa4.63□□□□□ -1.67
UPF3YGR072W MTH1P35198 433 aa4.62□□□□□ -1.67
UPF3YGR072W SAH1P39954 449 aaKnown RBP4.62□□□□□ -1.67
UPF3YGR072W VAC8P39968 578 aa4.62□□□□□ -1.67
UPF3YGR072W NPP2P39997 493 aa4.62□□□□□ -1.67
UPF3YGR072W ALD6P54115 500 aaKnown RBP4.62□□□□□ -1.67
UPF3YGR072W MUK1Q02866 612 aa4.62□□□□□ -1.67
UPF3YGR072W CAD1P24813 409 aaKnown RBP4.61□□□□□ -1.67
UPF3YGR072W SNF7P39929 240 aaKnown RBP4.61□□□□□ -1.67
UPF3YGR072W YJL049WP47048 450 aa4.61□□□□□ -1.67
UPF3YGR072W GND2P53319 492 aa4.61□□□□□ -1.67
UPF3YGR072W YOL098CQ12496 1037 aa4.61□□□□□ -1.67
UPF3YGR072W SFB2P53953 876 aa4.6□□□□□ -1.67
UPF3YGR072W PIN4P34217 668 aaKnown RBP RIP-Chip data4.59□□□□□ -1.67not detected
UPF3YGR072W OSW7P43611 510 aa4.59□□□□□ -1.67
UPF3YGR072W ESC2Q06340 456 aa4.59□□□□□ -1.67
UPF3YGR072W UPC2Q12151 913 aa4.59□□□□□ -1.67
UPF3YGR072W NDJ1Q12366 352 aa4.59□□□□□ -1.67
UPF3YGR072W RPC82P32349 654 aa4.58□□□□□ -1.68
UPF3YGR072W CDC12P32468 407 aaKnown RBP4.58□□□□□ -1.68
UPF3YGR072W SRP40P32583 406 aaPredicted RBP4.58□□□□□ -1.68
UPF3YGR072W PEX2P32800 271 aa4.58□□□□□ -1.68
UPF3YGR072W SPC42P36094 363 aa4.58□□□□□ -1.68
UPF3YGR072W YER158CP40095 573 aa4.58□□□□□ -1.68
UPF3YGR072W TIM44Q01852 431 aa4.58□□□□□ -1.68
UPF3YGR072W TRM13Q12383 476 aa4.58□□□□□ -1.68
UPF3YGR072W TRP4P07285 380 aaPredicted RBP4.57□□□□□ -1.68
UPF3YGR072W ABD1P32783 436 aaPredicted RBP4.57□□□□□ -1.68
UPF3YGR072W KRI1P42846 591 aaKnown RBP4.57□□□□□ -1.68
UPF3YGR072W YGR053CP53234 283 aa4.57□□□□□ -1.68
UPF3YGR072W SRP1Q02821 542 aaKnown RBP4.57□□□□□ -1.68
UPF3YGR072W SED4P25365 1065 aa4.56□□□□□ -1.68
UPF3YGR072W NMD2P38798 1089 aaKnown RBP4.56□□□□□ -1.68
UPF3YGR072W RNT1Q02555 471 aa4.56□□□□□ -1.68
UPF3YGR072W STE14P32584 239 aa4.55□□□□□ -1.68
UPF3YGR072W BRN1P38170 754 aa4.55□□□□□ -1.68
UPF3YGR072W RAI1P53063 387 aaKnown RBP4.55□□□□□ -1.68
UPF3YGR072W GDE1Q02979 1223 aa4.55□□□□□ -1.68
UPF3YGR072W SSF2Q12153 453 aaPredicted RBP4.55□□□□□ -1.68
UPF3YGR072W YOR131CQ12486 218 aa4.55□□□□□ -1.68
UPF3YGR072W ALG7P07286 448 aa4.54□□□□□ -1.68
UPF3YGR072W STI1P15705 589 aaKnown RBP RIP-Chip data4.54□□□□□ -1.68not detected
UPF3YGR072W YKL091CP33324 310 aaKnown RBP4.54□□□□□ -1.68
UPF3YGR072W MBP1P39678 833 aa4.54□□□□□ -1.68
UPF3YGR072W GYP7P48365 746 aa4.54□□□□□ -1.68
UPF3YGR072W YPR196WQ06595 470 aa4.54□□□□□ -1.68
UPF3YGR072W PPR1P07272 904 aaPredicted RBP4.53□□□□□ -1.68
UPF3YGR072W FAA4P47912 694 aaKnown RBP4.53□□□□□ -1.68
UPF3YGR072W DOS2P54858 310 aa4.53□□□□□ -1.68
UPF3YGR072W SLU7Q02775 382 aaKnown RBP4.53□□□□□ -1.68
Retrieved 100 of 5,963 RNA–protein pairs in 18.1 ms